Rh5AG029600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015228
Physical Location & Seq
Reverse (-)
2054638 .. 2054973
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG029600.1

Sequence Viewer

Length: 336 bp
ATGGCTGGTGTAAGGAAGCGTACTGGGTACTCGAAGATCGATAAGGAAGACCCGGAAGAGGTCATTCATCGACGAGCGCAGTTCTTGGTCTACAAAGTGATGCAGCAAGCCGAGTATCGTAGAAGGCCTTCCAATTTGAAGATTAGAATACGGAAATTGAAGGTTAAGTTCGGGATGAGATTGAAGAAGTTGAGGAAGAGCATGCTGCTAAGTATATCTGCGGCGAGAGTTGTCGTTTATAAACAAGTGTTTAGGCAGTTGAAAACTTGCAAGAGCTTGTTTGGCCGTGGAGAGGAGCCATTGCCAGCCTTCAACCTTTGTTCACTTGCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

13.04

Weight (kDa)

10.9

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11655
fragaria_vesca FvH4_3g02270
malus_domestica MD00G1206700.v1.1 MD05G1344200.v1.1 MD10G1320200.v1.1
prunus_persica Prupe.4G022200_v2.0.a1
pyrus_communis pycom05g31360
rosa_chinensis RchiOBHm_Chr5g0003391
rosa_laevigata RLG00000031135
rosa_multiflora Rmu_co8199484.1_g000001 Rmu_sc0010917.1_g000001
rosa_roxburghii Rroxscaffold_1G00072630
rosa_rugosa Rorug04G0403000
rosa_samantha Rh5AG029600 Rh5CG031800
rosa_wichuraiana Rw5G002770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 283
AfaI GTAC 2 cut(s) 22, 29
AfiI CCNNNNNNNGG 2 cut(s) 58, 292
AgsI TTSAA 5 cut(s) 139, 160, 184, 262, 313
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
AoxI GGCC 2 cut(s) 125, 283
ApeKI GCWGC 2 cut(s) 103, 205
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 112, 144
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 115, 192
BceAI ACGGC 1 cut(s) 270
BcnI CCSGG 1 cut(s) 53
BisI GCNGC 3 cut(s) 104, 206, 222
BlsI GCNGC 3 cut(s) 105, 207, 223
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 292
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 299
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 58, 292
BseMI GCAATG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 115, 192
BshFI GGCC 2 cut(s) 127, 285
BshVI ATCGAT 1 cut(s) 39
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 58, 292
BsnI GGCC 2 cut(s) 127, 285
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 127, 285
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 297
BspQI GCTCTTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 1 cut(s) 36
Bst6I CTCTTC 2 cut(s) 51, 191
BstC8I GCNNGC 3 cut(s) 108, 203, 306
BstDEI CTNAG 1 cut(s) 209
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 115, 192
BstV2I GAAGAC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 2 cut(s) 127, 285
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 3 cut(s) 108, 203, 306
CfoI GCGC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 21, 28
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 5, 110, 127, 276, 285, 298, 308
CviKI_1 RGCY 7 cut(s) 5, 110, 127, 276, 285, 298, 308
CviQI GTAC 2 cut(s) 21, 28
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 2 cut(s) 51, 191
EarI CTCTTC 2 cut(s) 51, 191
Eco147I AGGCCT 1 cut(s) 127
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 203, 215, 240
FatI CATG 1 cut(s) 201
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 104, 206, 222
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 104, 206, 222
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 104, 206, 222
HaeIII GGCC 2 cut(s) 127, 285
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 91, 323
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 2 cut(s) 91, 323
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 4 cut(s) 117, 138, 154, 319
HpyCH4V TGCA 3 cut(s) 103, 270, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 36
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 3 cut(s) 9, 66, 318
Lsp1109I GCAGC 2 cut(s) 115, 192
LweI GCATC 1 cut(s) 90
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 6 cut(s) 46, 59, 68, 151, 196, 208
MluCI AATT 2 cut(s) 133, 155
MnlI CCTC 3 cut(s) 52, 186, 286
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 165
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 53
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 1 cut(s) 136
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 105, 207, 223
PsiI TTATAA 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 297
RsaI GTAC 2 cut(s) 22, 29
RsaNI GTAC 2 cut(s) 21, 28
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 3 cut(s) 104, 206, 222
Sau3AI GATC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 53
SetI ASST 4 cut(s) 63, 165, 278, 318
SfaNI GCATC 1 cut(s) 90
SphI GCATGC 1 cut(s) 205
Sse9I AATT 2 cut(s) 133, 155
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 1 cut(s) 221
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 51
TaqI TCGA 3 cut(s) 32, 39, 70
TasI AATT 2 cut(s) 133, 155
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 2 cut(s) 103, 205
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.