FvH4_3g05340

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3112758 .. 3114038
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05340.t1

Sequence Viewer

Length: 273 bp
ATGGGGCATAGCAAGCTTGCTCTTAACTGGGTTCCAATCTTGGTTCTTGTTCTAATGGGGGCTTCAATCTCATTTGTCGAATCTTCTCGCAAGTGTCTCCAAGTAGGATCAACAATCTCAGAAAACAGAGAAACACAGGGGATTCAAATCAAGGAGGCTGATAGAGCATTTGGGAATGGAGCTAAGGTTCTCAGCACTGTGGATAACTCAGACAGGCTAGTTCCATCTGGACCTGACCCCCTTCATCATAAAAACAACCCCATTAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.72

Weight (kDa)

8.98

Isoelectric Point (pI)

15.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 115
AgsI TTSAA 2 cut(s) 66, 146
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 2 cut(s) 16, 182
AluI AGCT 2 cut(s) 16, 182
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BccI CCATC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 33
BmrI ACTGGG 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse1I ACTGG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 146
BseJI GATNNNNATC 1 cut(s) 146
BseMII CTCAG 3 cut(s) 132, 205, 222
BseNI ACTGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 107
BspCNI CTCAG 3 cut(s) 131, 204, 221
BspLI GGNNCC 1 cut(s) 33
BspPI GGATC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 32
BssMI GATC 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 14, 18
BstDEI CTNAG 4 cut(s) 118, 183, 191, 208
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 13, 164
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 14, 18
Cfr13I GGNCC 1 cut(s) 230
CviJI RGCY 5 cut(s) 16, 62, 158, 182, 217
CviKI_1 RGCY 5 cut(s) 16, 62, 158, 182, 217
DdeI CTNAG 4 cut(s) 118, 183, 191, 208
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 230
FaiI YATR 2 cut(s) 9, 249
FspBI CTAG 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 80, 142
Hpy188I TCNGA 2 cut(s) 121, 211
Hpy188III TCNNGA 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 164
HpyF3I CTNAG 4 cut(s) 118, 183, 191, 208
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 5 cut(s) 13, 122, 199, 213, 246
MaeI CTAG 1 cut(s) 218
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 1 cut(s) 75
MnlI CCTC 1 cut(s) 148
MseI TTAA 2 cut(s) 24, 264
MwoI GCNNNNNNNGC 2 cut(s) 13, 164
NdeII GATC 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 80, 142
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 24, 264
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 230
SetI ASST 4 cut(s) 18, 184, 189, 235
SinI GGWCC 1 cut(s) 230
SspMI CTAG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 78
TfiI GAWTC 2 cut(s) 80, 142
Tru1I TTAA 2 cut(s) 24, 264
Tru9I TTAA 2 cut(s) 24, 264
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 230
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.