Rmu_sc0018349.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018349.1
Physical Location & Seq
Forward (+)
13680 .. 14618
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018349.1_g000005.1.cds

Sequence Viewer

Length: 276 bp
atggggcatagcaagctagctcttaactgggtttcaatcttggttcttgttctaatggtggcttcaatcccatttgtccaatcttctcgcacctgtctccaagtaagaacaacaaccatctcagaaaacagagaaacacaggggattcaaatcaaggaggctgataaagcatttgggaatggagctaaggttctcggcagtgtggaaaactcagagaggctagttccaactggacctgacccccttcaccataacaacaaccccattaaaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.9

Weight (kDa)

9.03

Isoelectric Point (pI)

20.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 36, 66, 149
AloI GAACNNNNNNTCC 2 cut(s) 174, 206
AluBI AGCT 3 cut(s) 16, 20, 185
AluI AGCT 3 cut(s) 16, 20, 185
Alw26I GTCTC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 239
AsuNHI GCTAGC 1 cut(s) 16
AvaII GGWCC 1 cut(s) 233
BccI CCATC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 17, 221
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 37
BmtI GCTAGC 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse1I ACTGG 2 cut(s) 32, 235
Bse8I GATNNNNATC 1 cut(s) 149
BseJI GATNNNNATC 1 cut(s) 149
BseMII CTCAG 2 cut(s) 135, 225
BseNI ACTGG 2 cut(s) 32, 235
BsmAI GTCTC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 134, 224
BspOI GCTAGC 1 cut(s) 20
BsrI ACTGG 2 cut(s) 32, 235
BstC8I GCNNGC 2 cut(s) 14, 18
BstDEI CTNAG 3 cut(s) 121, 186, 211
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 13, 167
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 14, 18
Cfr13I GGNCC 1 cut(s) 233
CviJI RGCY 6 cut(s) 16, 20, 62, 161, 185, 220
CviKI_1 RGCY 6 cut(s) 16, 20, 62, 161, 185, 220
DdeI CTNAG 3 cut(s) 121, 186, 211
Eco47I GGWCC 1 cut(s) 233
FaiI YATR 2 cut(s) 9, 252
FspBI CTAG 2 cut(s) 17, 221
HinfI GANTC 1 cut(s) 145
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 124, 214
HpyAV CCTTC 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 167
HpyF3I CTNAG 3 cut(s) 121, 186, 211
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 5 cut(s) 13, 106, 125, 216, 249
MaeI CTAG 2 cut(s) 17, 221
MboII GAAGA 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 2 cut(s) 151, 210
MseI TTAA 2 cut(s) 24, 267
MwoI GCNNNNNNNGC 2 cut(s) 13, 167
NheI GCTAGC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 174
PfeI GAWTC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 24, 267
Sau96I GGNCC 1 cut(s) 233
SetI ASST 6 cut(s) 18, 22, 95, 187, 192, 238
SinI GGWCC 1 cut(s) 233
SspMI CTAG 2 cut(s) 17, 221
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 24, 267
Tru9I TTAA 2 cut(s) 24, 267
TscAI CASTG 1 cut(s) 205
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 233
XspI CTAG 2 cut(s) 17, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.