Rorug05G0459400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017261
Physical Location & Seq
Forward (+)
63242317 .. 63242955
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0459400.1

Sequence Viewer

Length: 639 bp
ATGCTAAGGCGGTTGGCCGCTCAGTTACTCTATTTCTCTTTGGGAAATGGAATCTATCCACATCACACTGGTGTGTTCGAGATTATATGTCCTGGGAGTAAAATTTTAGAGTGGTTCACTATTCAAAGCGACGGAGATTTATTAACTGTGGAGCTACCTCCGGATCGGCAATCATGTAAATCAAAGTGGATGGGAATTGTGTTTTGTGTTGTTTTTGAAAACCAAAAGAATCCAGCCGAGTTTGATGATTTCCTACTTCGATGTTTATGGCAAGGAAGTTCCTATCCCTCTTCGTATTTTGGAATAAGAAGCAAATATATTGAGAAAGATCACCTTTGGGTATTTTATTTGCCTCGTGACAAAATTCAGGACACCACAAGTTGCCATATTGACTTCTTGTTTGAAGGGTACTATTATTCGAATAAGAGTTTGGAATCCAATACAAGGTCGAATACTGCATGCTCGAATACTGTGAAGAACTGTGGGGGCCGTTTGGTGTACGAGGAAGATTTGAAAGAACTCGATGGAAGAAGGAACATCTATAAACGGAGTCGTGAACATTGTGACGAGGAGGAGGGAAGTGAAGGTCGAAGTGCAAGCTCTAACAAAGAATCACTTTCCAAAAGACTCAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.55

Weight (kDa)

6.53

Isoelectric Point (pI)

66.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 30 - 171 3.2e-11 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05340 FvH4_3g43590
prunus_persica Prupe.6G018100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0078161
rosa_multiflora Rmu_sc0018349.1_g000005 Rmu_sc0018349.1_g000006
rosa_roxburghii Rroxscaffold_1G00003970
rosa_rugosa Rorug05G0459400
rosa_samantha Rh5AG513700 Rh5BG536700 Rh5CG560100 Rh5DG548300
rosa_wichuraiana Rw5G047670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 2 cut(s) 10, 18
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 102, 363
AfaI GTAC 2 cut(s) 410, 500
AfiI CCNNNNNNNGG 1 cut(s) 444
AgsI TTSAA 4 cut(s) 125, 218, 404, 514
AjnI CCWGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AleI CACNNNNGTG 2 cut(s) 69, 71
AluBI AGCT 2 cut(s) 154, 600
AluI AGCT 2 cut(s) 154, 600
AlwI GGATC 1 cut(s) 171
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 2 cut(s) 15, 487
ApoI RAATTY 2 cut(s) 102, 363
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 419
BauI CACGAG 1 cut(s) 354
BccI CCATC 2 cut(s) 184, 518
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 1 cut(s) 93
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 2 cut(s) 584, 587
BshFI GGCC 2 cut(s) 17, 489
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 444
BsnI GGCC 2 cut(s) 17, 489
Bsp119I TTCGAA 1 cut(s) 419
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 163, 328
BspACI CCGC 2 cut(s) 10, 18
BspANI GGCC 2 cut(s) 17, 489
BspCNI CTCAG 1 cut(s) 34
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 488
BspPI GGATC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 163, 328
BssSI CACGAG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 148, 472, 482
Bst6I CTCTTC 1 cut(s) 295
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 460, 598
BstDEI CTNAG 2 cut(s) 5, 21
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 2 cut(s) 166, 331
BstMBI GATC 2 cut(s) 163, 328
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 91
BsuRI GGCC 2 cut(s) 17, 489
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 460, 598
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 2 cut(s) 409, 499
CviAII CATG 3 cut(s) 174, 459, 636
CviJI RGCY 5 cut(s) 17, 154, 236, 489, 600
CviKI_1 RGCY 5 cut(s) 17, 154, 236, 489, 600
CviQI GTAC 2 cut(s) 409, 499
DdeI CTNAG 2 cut(s) 5, 21
DpnI GATC 2 cut(s) 165, 330
DpnII GATC 2 cut(s) 163, 328
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 177, 462, 639
FaiI YATR 9 cut(s) 86, 88, 175, 268, 318, 387, 460, 543, 637
FalI AAGNNNNNCTT 4 cut(s) 318, 350, 600, 632
FatI CATG 3 cut(s) 173, 458, 635
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
HaeIII GGCC 2 cut(s) 17, 489
HapII CCGG 1 cut(s) 161
Hin1II CATG 3 cut(s) 177, 462, 639
HinfI GANTC 6 cut(s) 51, 229, 434, 550, 611, 627
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 117, 499, 557
Hpy188III TCNNGA 5 cut(s) 79, 161, 356, 368, 554
Hpy8I GTNNAC 3 cut(s) 117, 499, 557
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 398, 525, 578
HpyCH4III ACNGT 3 cut(s) 148, 472, 482
HpyCH4V TGCA 2 cut(s) 458, 596
HpyF3I CTNAG 2 cut(s) 5, 21
Hsp92II CATG 3 cut(s) 177, 462, 639
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 163, 328
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 6 cut(s) 54, 78, 105, 174, 246, 353
MaeIII GTNAC 3 cut(s) 24, 356, 563
MalI GATC 2 cut(s) 165, 330
MbiI CCGCTC 1 cut(s) 20
MboI GATC 2 cut(s) 163, 328
MboII GAAGA 4 cut(s) 282, 487, 518, 540
MluCI AATT 3 cut(s) 102, 195, 363
MlyI GAGTC 2 cut(s) 559, 621
MnlI CCTC 7 cut(s) 168, 298, 363, 496, 562, 565, 568
MroI TCCGGA 1 cut(s) 160
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 2 cut(s) 69, 71
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
NdeII GATC 2 cut(s) 163, 328
NlaIII CATG 3 cut(s) 177, 462, 639
NlaIV GGNNCC 1 cut(s) 488
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 356, 563
NspI RCATGY 1 cut(s) 462
NspV TTCGAA 1 cut(s) 419
OliI CACNNNNGTG 2 cut(s) 69, 71
PaeI GCATGC 1 cut(s) 462
PfeI GAWTC 4 cut(s) 51, 229, 434, 611
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 2 cut(s) 558, 621
PpsI GAGTC 2 cut(s) 558, 621
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 488
PspPI GGNCC 1 cut(s) 487
RsaI GTAC 2 cut(s) 410, 500
RsaNI GTAC 2 cut(s) 409, 499
RseI CAYNNNNRTG 2 cut(s) 69, 71
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 163, 328
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 2 cut(s) 559, 621
ScrFI CCNGG 1 cut(s) 93
SetI ASST 6 cut(s) 156, 160, 336, 449, 589, 602
SfuI TTCGAA 1 cut(s) 419
SmiMI CAYNNNNRTG 2 cut(s) 69, 71
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SphI GCATGC 1 cut(s) 462
Sse9I AATT 3 cut(s) 102, 195, 363
SsiI CCGC 2 cut(s) 10, 18
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 3 cut(s) 148, 472, 482
TaqI TCGA 7 cut(s) 78, 259, 419, 449, 464, 522, 589
TasI AATT 3 cut(s) 102, 195, 363
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 4 cut(s) 51, 229, 434, 611
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 2 cut(s) 356, 563
Tsp45I GTSAC 2 cut(s) 356, 563
TspGWI ACGGA 2 cut(s) 147, 562
TspRI CASTG 1 cut(s) 73
XapI RAATTY 2 cut(s) 102, 363
XceI RCATGY 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.