FvH4_3g43590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017261
Physical Location & Seq
Forward (+)
36324103 .. 36325967
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43590.t1

Sequence Viewer

Length: 540 bp
ATGTCTTGCTCTACACCTGGAGCTCTCTCATCACCAAAACTAACCAGTTCTTCAAAAGACAACCCTGCCCTCGTTAACTTCCCCTTCTCTGGCACCTGTATGGGGGTGAGTTTGGTATTTCCATCCTCATTGGCTCCTATATCAGGAGCTGGTACAGACAACGTACCCACCCTCTCGCTTTCACTATTTGTGTCTGTGTCACTTGTGAGCTGGAGAGGCTTTAATTTTTTATTTTTTATTTTTTATGAGATCAACAAAATCAGAATGGGGCATAGCAAGCTTGCTCTCAACTGGGTTCTAATCTTGGTTCTTGTTCTAATGGCGGCTTCAGTCTCATCTGTCGAATCTTCTCGCAAGTGTCTCCAAGTAGGAACATCAAAAACCTCAGAAAACAAAGGAACACAGGGGATTCAAATCAAGGAGGCTGATAGAGCATATGGGAATGGAGCTAAGGTTTTTAGCACTGTGGATAACTCAGACAGGCTAGTTCCAACTGGACCTGACCCCCTTCACCATAACAACAATCCCATTAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.08

Weight (kDa)

9.3

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05340 FvH4_3g43590
prunus_persica Prupe.6G018100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0078161
rosa_multiflora Rmu_sc0018349.1_g000005 Rmu_sc0018349.1_g000006
rosa_roxburghii Rroxscaffold_1G00003970
rosa_rugosa Rorug05G0459400
rosa_samantha Rh5AG513700 Rh5BG536700 Rh5CG560100 Rh5DG548300
rosa_wichuraiana Rw5G047670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 154, 165
AfiI CCNNNNNNNGG 3 cut(s) 89, 102, 143
AgsI TTSAA 2 cut(s) 54, 413
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 5 cut(s) 23, 149, 210, 280, 449
AluI AGCT 5 cut(s) 23, 149, 210, 280, 449
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 337, 365
AlwNI CAGNNNCTG 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 24, 118, 503
AvaII GGWCC 1 cut(s) 497
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 337, 365
BfaI CTAG 1 cut(s) 485
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 94, 135
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 301
BpmI CTGGAG 2 cut(s) 39, 232
Bpu10I CCTNAGC 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 102, 143
Bse1I ACTGG 3 cut(s) 45, 296, 499
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 122
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 3 cut(s) 89, 102, 143
BseMII CTCAG 2 cut(s) 399, 489
BseNI ACTGG 3 cut(s) 45, 296, 499
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 25
BslI CCNNNNNNNGG 3 cut(s) 89, 102, 143
BsmAI GTCTC 2 cut(s) 337, 365
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 1 cut(s) 323
BspCNI CTCAG 2 cut(s) 398, 488
BspLI GGNNCC 2 cut(s) 94, 135
BspT107I GGYRCC 1 cut(s) 92
BsrI ACTGG 3 cut(s) 45, 296, 499
BssMI GATC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 278, 282
BstDEI CTNAG 3 cut(s) 385, 450, 475
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 337, 365
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 216, 277, 431
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 2 cut(s) 278, 282
CaiI CAGNNNCTG 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 497
Csp6I GTAC 2 cut(s) 153, 164
CviQI GTAC 2 cut(s) 153, 164
DdeI CTNAG 3 cut(s) 385, 450, 475
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 497
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 25
FaiI YATR 7 cut(s) 101, 140, 246, 273, 436, 438, 516
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 485
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 2 cut(s) 39, 232
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 344, 409
HpaI GTTAAC 1 cut(s) 76
HphI GGTGA 3 cut(s) 24, 118, 503
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 263, 388, 478
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 94, 518
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 277, 431
HpyF3I CTNAG 3 cut(s) 385, 450, 475
HpySE526I ACGT 1 cut(s) 162
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 20, 139, 146, 446
MaeI CTAG 1 cut(s) 485
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 198
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 42, 339
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 6 cut(s) 80, 136, 182, 209, 394, 415
MseI TTAA 3 cut(s) 75, 222, 531
MslI CAYNNNNRTG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 3 cut(s) 216, 277, 431
NdeI CATATG 1 cut(s) 436
NdeII GATC 1 cut(s) 249
NlaIV GGNNCC 2 cut(s) 94, 135
NmuCI GTSAC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 344, 409
PkrI GCNGC 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 94, 135
PspPI GGNCC 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 154, 165
RsaNI GTAC 2 cut(s) 153, 164
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 3 cut(s) 75, 222, 531
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 25
SinI GGWCC 1 cut(s) 497
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 1 cut(s) 223
SsiI CCGC 1 cut(s) 323
SspMI CTAG 1 cut(s) 485
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 342
TasI AATT 1 cut(s) 223
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 2 cut(s) 344, 409
Tru1I TTAA 3 cut(s) 75, 222, 531
Tru9I TTAA 3 cut(s) 75, 222, 531
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 198
TspRI CASTG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 497
XagI CCTNNNNNAGG 1 cut(s) 141
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.