Prupe.6G018100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
1321202 .. 1322215
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G018100.1

Sequence Viewer

Length: 276 bp
ATGGGGCATAAGAAAGCTCTCACAGGGTTTTCAACCTTCATAATCATTCTAATGGTGGCCTCAATACCATTTGTGCAACCTTCTCGCCTCCAAGTAAGAACATTCACTTTGACAGAAAACACAAACACAAACACAAAGGGGCTTCAAATCAACCAGGCTGATAGATTTGGGAATGGAGAAGGAGCTAAGGTTTTCAATGCTGTGGAAGACTCAGCAAGGCAAGTTCCAGCTGGTCCTGACCCTCTTCACCATAACAACAACCCCATTGGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.86

Weight (kDa)

9.52

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 33, 146, 196
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 3 cut(s) 17, 185, 230
AluI AGCT 3 cut(s) 17, 185, 230
AoxI GGCC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 233, 269
AsuHPI GGTGA 1 cut(s) 239
AvaII GGWCC 2 cut(s) 233, 269
BbsI GAAGAC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 2 cut(s) 233, 269
BmgT120I GGNCC 2 cut(s) 233, 269
BmrFI CCNGG 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
BseBI CCWGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 59
BsnI GGCC 1 cut(s) 59
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 186, 211
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 233, 269
CviJI RGCY 6 cut(s) 17, 59, 142, 158, 185, 230
CviKI_1 RGCY 6 cut(s) 17, 59, 142, 158, 185, 230
DdeI CTNAG 2 cut(s) 186, 211
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 233, 269
EcoRII CCWGG 1 cut(s) 153
FaiI YATR 3 cut(s) 9, 41, 252
HaeIII GGCC 1 cut(s) 59
HinfI GANTC 1 cut(s) 209
HphI GGTGA 1 cut(s) 239
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 46, 90, 173
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 186, 211
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 6 cut(s) 9, 140, 167, 216, 240, 249
MboII GAAGA 2 cut(s) 218, 236
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 70, 98, 252
MseI TTAA 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 2 cut(s) 233, 269
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 274
Sau96I GGNCC 2 cut(s) 233, 269
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 155
SetI ASST 6 cut(s) 19, 38, 82, 187, 192, 232
SinI GGWCC 2 cut(s) 233, 269
SmiMI CAYNNNNRTG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 153
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 28
VpaK11BI GGWCC 2 cut(s) 233, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.