Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017999

Physical Location & Seq

Genomic Coordinates Reverse (-)

4409352 .. 4410308

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07431.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCGATGTAATCTTCCAACTCCCATACCAAACTCTCGTTTTCCCTCACTTAAACCCTTTCTTTTCACATACTTCCTATATTTCAACAACATCTTGTCAAGAGTTTTCAAACTGAGAAGTTCTGATAATGAAACATTCCAAGTTGAAGAAGTTGCAGCACTACACTCTAAAACCATTAAGAGCTCGTCGTCCACTGAGATTACAGTGCCAAACGTTAAGGCAGAAATCTTAGGCAAGGTGGTGGACTGGTGCAATAAGCATGCAGTTAGTGAAGGCACTAAAGATCAACTCATCAAAGAGTGGGACGCTGAGTTTCTTAGCGTCGATCAAGATGTTCTGTTCAAGCTCATAACGGCTGCAGACTATCTACAGATTAAGGAACTGGTGGATCAATTAACTCAAAGAGTTGCGGACATGATTAAAGCAAAGACATTCAGGACAGTAGAAATGACTCGCAGAGCGTCTAACGTTGAGAGAGAAGTGCAAGAGGATCTAAAATCATTAGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

171

Amino Acids

19.54

Weight (kDa)

6.75

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	35 - 88	1.2e-12	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017999)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07431
prunus_persica	Prupe.4G065500_v2.0.a1
pyrus_communis	pycom08g00800
rosa_laevigata	RLG00000031833
rosa_multiflora	Rmu_sc0009975.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065020
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083900 Rh5CG097500 Rh5DG084000
rosa_wichuraiana	Rw5G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	410
AclI	AACGTT	2 cut(s)	213, 468
AclWI	GGATC	2 cut(s)	396, 498
AgsI	TTSAA	4 cut(s)	85, 109, 146, 343
AluBI	AGCT	2 cut(s)	183, 346
AluI	AGCT	2 cut(s)	183, 346
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	396, 498
ApeKI	GCWGC	2 cut(s)	155, 356
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	167, 343
BceAI	ACGGC	1 cut(s)	369
BfmI	CTRYAG	2 cut(s)	357, 368
BisI	GCNGC	2 cut(s)	156, 357
BlsI	GCNGC	2 cut(s)	157, 358
Bse1I	ACTGG	2 cut(s)	251, 387
BseMII	CTCAG	3 cut(s)	104, 186, 300
BseNI	ACTGG	2 cut(s)	251, 387
BseXI	GCAGC	2 cut(s)	167, 343
BsiHKAI	GWGCWC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	283, 325, 388, 490
BspACI	CCGC	1 cut(s)	410
BspCNI	CTCAG	3 cut(s)	105, 187, 301
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	2 cut(s)	396, 498
BsrI	ACTGG	2 cut(s)	251, 387
BssMI	GATC	4 cut(s)	283, 325, 388, 490
Bst4CI	ACNGT	2 cut(s)	205, 442
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	5 cut(s)	113, 195, 229, 309, 317
BstKTI	GATC	4 cut(s)	286, 328, 391, 493
BstMBI	GATC	4 cut(s)	283, 325, 388, 490
BstNSI	RCATGY	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	357, 368
BstV1I	GCAGC	2 cut(s)	167, 343
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	192, 210
Cac8I	GCNNGC	1 cut(s)	261
CseI	GACGC	3 cut(s)	310, 314, 450
CviAII	CATG	2 cut(s)	260, 415
CviJI	RGCY	4 cut(s)	183, 346, 356, 507
CviKI_1	RGCY	4 cut(s)	183, 346, 356, 507
DdeI	CTNAG	5 cut(s)	113, 195, 229, 309, 317
DpnI	GATC	4 cut(s)	285, 327, 390, 492
DpnII	GATC	4 cut(s)	283, 325, 388, 490
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	2 cut(s)	263, 418
FaiI	YATR	6 cut(s)	26, 70, 79, 261, 350, 416
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	259, 414
Fnu4HI	GCNGC	2 cut(s)	156, 357
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	156, 357
GluI	GCNGC	2 cut(s)	156, 357
HgaI	GACGC	3 cut(s)	310, 314, 450
Hin1II	CATG	2 cut(s)	263, 418
HinfI	GANTC	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	192, 244
Hpy188I	TCNGA	2 cut(s)	124, 512
Hpy188III	TCNNGA	3 cut(s)	99, 329, 436
Hpy8I	GTNNAC	2 cut(s)	192, 244
Hpy99I	CGWCG	2 cut(s)	190, 326
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	205, 442
HpyCH4IV	ACGT	2 cut(s)	213, 468
HpyCH4V	TGCA	5 cut(s)	155, 252, 263, 359, 484
HpyF3I	CTNAG	5 cut(s)	113, 195, 229, 309, 317
HpySE526I	ACGT	2 cut(s)	213, 468
Hsp92II	CATG	2 cut(s)	263, 418
Kzo9I	GATC	4 cut(s)	283, 325, 388, 490
LpnPI	CCDG	3 cut(s)	232, 368, 421
Lsp1109I	GCAGC	2 cut(s)	167, 343
MaeII	ACGT	2 cut(s)	213, 468
MalI	GATC	4 cut(s)	285, 327, 390, 492
MboI	GATC	4 cut(s)	283, 325, 388, 490
MboII	GAAGA	2 cut(s)	5, 158
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	2 cut(s)	55, 481
MseI	TTAA	6 cut(s)	51, 177, 216, 375, 395, 420
NdeII	GATC	4 cut(s)	283, 325, 388, 490
NlaIII	CATG	2 cut(s)	263, 418
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	157, 358
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	185
Psp1406I	AACGTT	2 cut(s)	213, 468
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	6 cut(s)	51, 177, 216, 375, 395, 420
SatI	GCNGC	2 cut(s)	156, 357
Sau3AI	GATC	4 cut(s)	283, 325, 388, 490
SchI	GAGTC	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	5 cut(s)	185, 216, 240, 348, 471
SfcI	CTRYAG	2 cut(s)	357, 368
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	392
SsiI	CCGC	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	205, 442
TaiI	ACGT	2 cut(s)	216, 471
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	392
Tru1I	TTAA	6 cut(s)	51, 177, 216, 375, 395, 420
Tru9I	TTAA	6 cut(s)	51, 177, 216, 375, 395, 420
TscAI	CASTG	2 cut(s)	199, 210
TseI	GCWGC	2 cut(s)	155, 356
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	199, 210
XceI	RCATGY	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.