Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0017999

Physical Location & Seq

Genomic Coordinates Reverse (-)

621025 .. 621859

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCGTCAGAGAGGAAGATAACTCTGAAGAGCTCGGACGGCGAGACGTTCGAGGTGGACGAGGCGGTGGCTTTGATGTCTCAGACGATAAAGCACATGGTGGAGGACGATTGTGCCGACAACGGGATCCCGCTGCCCAACGTCAACAGCAAGATCTTGGCGAAGGTCATCGAGTACTGCCGGAAGCACGTCGAGGCCGCTAAGCCCGAAGAACGCGCCTCCGTCGATGAAGACCTCAAGGCTTGGGACGCCGAATTCGTCAAGGTCGACCAGGCCACGCTCTTCGATCTCATCCTGGCTGCGAATTATTTGAACATAAAGAGCTTGCTGGACCTGACTTGCCAAACAGTGGCGGACATCGATCAAGGGAAAAACGCCCGAGGAGATTCGCAAGACGTTCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

4.59

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017999)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07431
prunus_persica	Prupe.4G065500_v2.0.a1
pyrus_communis	pycom08g00800
rosa_laevigata	RLG00000031833
rosa_multiflora	Rmu_sc0009975.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065020
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083900 Rh5CG097500 Rh5DG084000
rosa_wichuraiana	Rw5G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	216
AciI	CCGC	4 cut(s)	65, 131, 198, 353
AclWI	GGATC	2 cut(s)	121, 134
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	123, 349
AgsI	TTSAA	2 cut(s)	313, 401
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	270, 294
AluBI	AGCT	2 cut(s)	33, 324
AluI	AGCT	2 cut(s)	33, 324
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	2 cut(s)	38, 84
AlwI	GGATC	2 cut(s)	121, 134
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	2 cut(s)	195, 273
ApeKI	GCWGC	2 cut(s)	133, 299
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	120, 286
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	272, 296
BcoDI	GTCTC	2 cut(s)	38, 84
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	134, 198, 300
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	135, 199, 301
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	272, 296
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	272, 296
BpiI	GAAGAC	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 349
BseBI	CCWGG	2 cut(s)	272, 296
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	123, 349
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	120, 286
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	197, 275
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	123, 349
BsmAI	GTCTC	2 cut(s)	38, 84
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	197, 275
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	4 cut(s)	126, 153, 286, 361
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	65, 131, 198, 353
BspANI	GGCC	2 cut(s)	197, 275
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	121, 134
BspQI	GCTCTTC	2 cut(s)	23, 287
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	126, 153, 286, 361
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	272, 296
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	23, 287
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	81, 201
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	4 cut(s)	129, 156, 289, 364
BstMAI	GTCTC	2 cut(s)	38, 84
BstMBI	GATC	4 cut(s)	126, 153, 286, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 248
BstNI	CCWGG	2 cut(s)	272, 296
BstSCI	CCNGG	2 cut(s)	270, 294
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	120, 286
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	126, 153
BstYI	RGATCY	2 cut(s)	126, 153
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	197, 275
BsuTUI	ATCGAT	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	8 cut(s)	33, 71, 197, 205, 242, 275, 299, 324
CviKI_1	RGCY	8 cut(s)	33, 71, 197, 205, 242, 275, 299, 324
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	81, 201
DpnI	GATC	4 cut(s)	128, 155, 288, 363
DpnII	GATC	4 cut(s)	126, 153, 286, 361
DraIII	CACNNNGTG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	23, 287
EarI	CTCTTC	2 cut(s)	23, 287
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	270, 294
EcoT38I	GRGCYC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	100
FaiI	YATR	2 cut(s)	98, 317
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	134, 198, 300
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	134, 198, 300
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	134, 198, 300
HaeIII	GGCC	2 cut(s)	197, 275
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	2 cut(s)	145, 268
HindII	GTYRAC	2 cut(s)	145, 268
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	58, 145, 268
Hpy188I	TCNGA	4 cut(s)	10, 27, 37, 84
Hpy8I	GTNNAC	3 cut(s)	58, 145, 268
Hpy99I	CGWCG	2 cut(s)	194, 227
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	4 cut(s)	47, 141, 189, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 248
HpyF3I	CTNAG	2 cut(s)	81, 201
HpySE526I	ACGT	4 cut(s)	47, 141, 189, 396
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	126, 153, 286, 361
LguI	GCTCTTC	2 cut(s)	23, 287
LpnPI	CCDG	7 cut(s)	194, 257, 281, 284, 308, 314, 347
Lsp1109I	GCAGC	2 cut(s)	120, 286
MaeII	ACGT	4 cut(s)	47, 141, 189, 396
MalI	GATC	4 cut(s)	128, 155, 288, 363
MboI	GATC	4 cut(s)	126, 153, 286, 361
MboII	GAAGA	5 cut(s)	28, 40, 221, 242, 274
MflI	RGATCY	2 cut(s)	126, 153
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	2 cut(s)	254, 304
MnlI	CCTC	8 cut(s)	6, 46, 55, 97, 187, 229, 245, 374
MseI	TTAA	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	272, 296
MvaI	CCWGG	2 cut(s)	272, 296
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	39, 248
NdeII	GATC	4 cut(s)	126, 153, 286, 361
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	128
PciSI	GCTCTTC	2 cut(s)	23, 287
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 114, 255, 264
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	135, 199, 301
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	270, 294
PspGI	CCWGG	2 cut(s)	270, 294
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	126, 153
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	2 cut(s)	23, 287
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	3 cut(s)	134, 198, 300
Sau3AI	GATC	4 cut(s)	126, 153, 286, 361
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	272, 296
SduI	GDGCHC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	254, 304
SsiI	CCGC	4 cut(s)	65, 131, 198, 353
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	270, 294
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	4 cut(s)	50, 144, 192, 399
TaqI	TCGA	7 cut(s)	51, 171, 192, 225, 267, 285, 360
TasI	AATT	2 cut(s)	254, 304
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	2 cut(s)	133, 299
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.