modification-dependent protein catabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g07431 |
| prunus_persica | Prupe.4G065500_v2.0.a1 |
| pyrus_communis | pycom08g00800 |
| rosa_laevigata | RLG00000031833 |
| rosa_multiflora | Rmu_sc0009975.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00065020 |
| rosa_rugosa | Rorug04G0456900 |
| rosa_samantha | Rh5BG083900 Rh5CG097500 Rh5DG084000 |
| rosa_wichuraiana | Rw5G007720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 281 |
| AciI | CCGC | 3 cut(s) | 74, 279, 281 |
| AcoI | YGGCCR | 1 cut(s) | 75 |
| AfaI | GTAC | 2 cut(s) | 81, 263 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 169 |
| AgsI | TTSAA | 3 cut(s) | 43, 59, 379 |
| AluBI | AGCT | 2 cut(s) | 382, 406 |
| AluI | AGCT | 2 cut(s) | 382, 406 |
| Alw21I | GWGCWC | 1 cut(s) | 408 |
| Alw26I | GTCTC | 1 cut(s) | 203 |
| AoxI | GGCC | 1 cut(s) | 75 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| AspA2I | CCTAGG | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 1 cut(s) | 184 |
| AvrII | CCTAGG | 1 cut(s) | 163 |
| BanII | GRGCYC | 1 cut(s) | 408 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 254, 286 |
| Bbv12I | GWGCWC | 1 cut(s) | 408 |
| BbvI | GCAGC | 1 cut(s) | 58 |
| BccI | CCATC | 3 cut(s) | 101, 169, 419 |
| BceAI | ACGGC | 1 cut(s) | 62 |
| BclI | TGATCA | 1 cut(s) | 339 |
| BcoDI | GTCTC | 1 cut(s) | 203 |
| BfaI | CTAG | 2 cut(s) | 164, 314 |
| BisI | GCNGC | 3 cut(s) | 72, 75, 279 |
| BlnI | CCTAGG | 1 cut(s) | 163 |
| BlsI | GCNGC | 3 cut(s) | 73, 76, 280 |
| BpuEI | CTTGAG | 1 cut(s) | 368 |
| BsaJI | CCNNGG | 2 cut(s) | 163, 279 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 169 |
| BseDI | CCNNGG | 2 cut(s) | 163, 279 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 169 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseX3I | CGGCCG | 1 cut(s) | 75 |
| BseXI | GCAGC | 1 cut(s) | 58 |
| Bsh1236I | CGCG | 1 cut(s) | 281 |
| Bsh1285I | CGRYCG | 1 cut(s) | 78 |
| BshFI | GGCC | 1 cut(s) | 77 |
| BsiEI | CGRYCG | 1 cut(s) | 78 |
| BsiHKAI | GWGCWC | 1 cut(s) | 408 |
| BslFI | GGGAC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 169 |
| BsmAI | GTCTC | 1 cut(s) | 203 |
| BsmFI | GGGAC | 1 cut(s) | 248 |
| BsnI | GGCC | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 1 cut(s) | 408 |
| Bsp143I | GATC | 2 cut(s) | 256, 339 |
| BspACI | CCGC | 3 cut(s) | 74, 279, 281 |
| BspANI | GGCC | 1 cut(s) | 77 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspFNI | CGCG | 1 cut(s) | 281 |
| BssECI | CCNNGG | 2 cut(s) | 163, 279 |
| BssMI | GATC | 2 cut(s) | 256, 339 |
| BssT1I | CCWWGG | 1 cut(s) | 163 |
| BstC8I | GCNNGC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 1 cut(s) | 240 |
| BstDSI | CCRYGG | 1 cut(s) | 279 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 167 |
| BstFNI | CGCG | 1 cut(s) | 281 |
| BstKTI | GATC | 2 cut(s) | 259, 342 |
| BstMAI | GTCTC | 1 cut(s) | 203 |
| BstMBI | GATC | 2 cut(s) | 256, 339 |
| BstMCI | CGRYCG | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 123, 403 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| BstUI | CGCG | 1 cut(s) | 281 |
| BstV1I | GCAGC | 1 cut(s) | 58 |
| BstZI | CGGCCG | 1 cut(s) | 75 |
| BsuRI | GGCC | 1 cut(s) | 77 |
| BtgI | CCRYGG | 1 cut(s) | 279 |
| BtgZI | GCGATG | 1 cut(s) | 259 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| Cac8I | GCNNGC | 1 cut(s) | 195 |
| Cfr42I | CCGCGG | 1 cut(s) | 282 |
| CseI | GACGC | 1 cut(s) | 245 |
| Csp6I | GTAC | 2 cut(s) | 80, 262 |
| CviAII | CATG | 2 cut(s) | 103, 194 |
| CviJI | RGCY | 6 cut(s) | 71, 77, 117, 311, 382, 406 |
| CviKI_1 | RGCY | 6 cut(s) | 71, 77, 117, 311, 382, 406 |
| CviQI | GTAC | 2 cut(s) | 80, 262 |
| DdeI | CTNAG | 1 cut(s) | 240 |
| DpnI | GATC | 2 cut(s) | 258, 341 |
| DpnII | GATC | 2 cut(s) | 256, 339 |
| EaeI | YGGCCR | 1 cut(s) | 75 |
| EagI | CGGCCG | 1 cut(s) | 75 |
| Ecl136II | GAGCTC | 1 cut(s) | 406 |
| EclXI | CGGCCG | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 1 cut(s) | 163 |
| Eco24I | GRGCYC | 1 cut(s) | 408 |
| Eco52I | CGGCCG | 1 cut(s) | 75 |
| Eco53kI | GAGCTC | 1 cut(s) | 406 |
| EcoICRI | GAGCTC | 1 cut(s) | 406 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 167 |
| EcoT14I | CCWWGG | 1 cut(s) | 163 |
| EcoT38I | GRGCYC | 1 cut(s) | 408 |
| ErhI | CCWWGG | 1 cut(s) | 163 |
| FaeI | CATG | 2 cut(s) | 106, 197 |
| FaiI | YATR | 7 cut(s) | 104, 195, 267, 292, 338, 395, 449 |
| FaqI | GGGAC | 1 cut(s) | 248 |
| FatI | CATG | 2 cut(s) | 102, 193 |
| FbaI | TGATCA | 1 cut(s) | 339 |
| Fnu4HI | GCNGC | 3 cut(s) | 72, 75, 279 |
| FriOI | GRGCYC | 1 cut(s) | 408 |
| Fsp4HI | GCNGC | 3 cut(s) | 72, 75, 279 |
| FspBI | CTAG | 2 cut(s) | 164, 314 |
| GluI | GCNGC | 3 cut(s) | 72, 75, 279 |
| HaeIII | GGCC | 1 cut(s) | 77 |
| HgaI | GACGC | 1 cut(s) | 245 |
| Hin1II | CATG | 2 cut(s) | 106, 197 |
| HinfI | GANTC | 1 cut(s) | 364 |
| HphI | GGTGA | 1 cut(s) | 184 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 3 cut(s) | 97, 368, 385 |
| Hpy99I | CGWCG | 1 cut(s) | 131 |
| HpyAV | CCTTC | 2 cut(s) | 107, 444 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 3 cut(s) | 186, 197, 332 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 123, 403 |
| HpyF3I | CTNAG | 1 cut(s) | 240 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 2 cut(s) | 106, 197 |
| Ksp22I | TGATCA | 1 cut(s) | 339 |
| KspI | CCGCGG | 1 cut(s) | 282 |
| Kzo9I | GATC | 2 cut(s) | 256, 339 |
| LpnPI | CCDG | 2 cut(s) | 328, 414 |
| Lsp1109I | GCAGC | 1 cut(s) | 58 |
| MaeI | CTAG | 2 cut(s) | 164, 314 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 2 cut(s) | 258, 341 |
| MboI | GATC | 2 cut(s) | 256, 339 |
| MboII | GAAGA | 1 cut(s) | 262 |
| MhlI | GDGCHC | 1 cut(s) | 408 |
| MluCI | AATT | 4 cut(s) | 54, 302, 354, 420 |
| MnlI | CCTC | 6 cut(s) | 16, 27, 61, 103, 115, 211 |
| MseI | TTAA | 1 cut(s) | 249 |
| MspA1I | CMGCKG | 1 cut(s) | 281 |
| MvnI | CGCG | 1 cut(s) | 281 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 123, 403 |
| NdeII | GATC | 2 cut(s) | 256, 339 |
| NlaIII | CATG | 2 cut(s) | 106, 197 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| NspI | RCATGY | 1 cut(s) | 197 |
| PaeI | GCATGC | 1 cut(s) | 197 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 153 |
| PfeI | GAWTC | 1 cut(s) | 364 |
| PkrI | GCNGC | 3 cut(s) | 73, 76, 280 |
| Psp124BI | GAGCTC | 1 cut(s) | 408 |
| RsaI | GTAC | 2 cut(s) | 81, 263 |
| RsaNI | GTAC | 2 cut(s) | 80, 262 |
| SacI | GAGCTC | 1 cut(s) | 408 |
| SacII | CCGCGG | 1 cut(s) | 282 |
| SaqAI | TTAA | 1 cut(s) | 249 |
| SatI | GCNGC | 3 cut(s) | 72, 75, 279 |
| Sau3AI | GATC | 2 cut(s) | 256, 339 |
| SduI | GDGCHC | 1 cut(s) | 408 |
| SetI | ASST | 6 cut(s) | 38, 150, 174, 330, 384, 408 |
| Sfr303I | CCGCGG | 1 cut(s) | 282 |
| SgrBI | CCGCGG | 1 cut(s) | 282 |
| SmlI | CTYRAG | 1 cut(s) | 383 |
| SmoI | CTYRAG | 1 cut(s) | 383 |
| SphI | GCATGC | 1 cut(s) | 197 |
| Sse9I | AATT | 4 cut(s) | 54, 302, 354, 420 |
| SsiI | CCGC | 3 cut(s) | 74, 279, 281 |
| SspMI | CTAG | 2 cut(s) | 164, 314 |
| SstI | GAGCTC | 1 cut(s) | 408 |
| StyI | CCWWGG | 1 cut(s) | 163 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 1 cut(s) | 437 |
| TasI | AATT | 4 cut(s) | 54, 302, 354, 420 |
| TauI | GCSGC | 2 cut(s) | 77, 281 |
| TfiI | GAWTC | 1 cut(s) | 364 |
| Tru1I | TTAA | 1 cut(s) | 249 |
| Tru9I | TTAA | 1 cut(s) | 249 |
| TscAI | CASTG | 1 cut(s) | 144 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| TseI | GCWGC | 1 cut(s) | 71 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspDTI | ATGAA | 1 cut(s) | 262 |
| TspRI | CASTG | 1 cut(s) | 144 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 167 |
| XceI | RCATGY | 1 cut(s) | 197 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 100 |
| XmaJI | CCTAGG | 1 cut(s) | 163 |
| XspI | CTAG | 2 cut(s) | 164, 314 |