Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017999

Physical Location & Seq

Genomic Coordinates Forward (+)

8578195 .. 8578614

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCTAGAGTTTTCAAACTGAAAAGTTCTGACAATGAAACATTCGAGGTTGAAGAAGCTGCAGCACTACTCTCTGAAACCATCAAGAGCTCATCGTCCACCAAGATTACAGTGCCAAACGTGAAGGCGGAAATCTTAGGCAAGGTGGTGGAGTGGTGCAACAAGCATGCAGAGAGTGAAGGCACCAAAGATCAACTCATCAAAGAGTGGGACGCTGAGTTCGTTAGTGTTGACCAACATGTTCTGTTCAAGCTCATAACGGCTGCAGACTATCTACAGATTAAGGAATTGGTGGATCAATTAACTCAAAGAGTTGGGGACATGATTAAGGCAAAGACATTCAGGACGGTAGAAATGACTTACCCAACGTTTAACGTCGAGAGAGAAGTGCAAGAGGAATTAAAATCATTGGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

140

Amino Acids

15.83

Weight (kDa)

5.03

Isoelectric Point (pI)

26.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	4 - 57	5.5e-14	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017999)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07431
prunus_persica	Prupe.4G065500_v2.0.a1
pyrus_communis	pycom08g00800
rosa_laevigata	RLG00000031833
rosa_multiflora	Rmu_sc0009975.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065020
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083900 Rh5CG097500 Rh5DG084000
rosa_wichuraiana	Rw5G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	1 cut(s)	128
AclI	AACGTT	1 cut(s)	368
AclWI	GGATC	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	16, 53, 250
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	59, 90, 253
AluI	AGCT	3 cut(s)	59, 90, 253
Alw21I	GWGCWC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	59, 62, 263
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	46, 74, 250
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	3 cut(s)	60, 264, 275
BisI	GCNGC	3 cut(s)	60, 63, 264
BlsI	GCNGC	3 cut(s)	61, 64, 265
BmiI	GGNNCC	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	46, 74, 250
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	224, 332
BsmFI	GGGAC	2 cut(s)	224, 332
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	190, 295
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	64, 268
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	182
BssMI	GATC	2 cut(s)	190, 295
Bst4CI	ACNGT	2 cut(s)	112, 349
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	136, 216
BstKTI	GATC	2 cut(s)	193, 298
BstMBI	GATC	2 cut(s)	190, 295
BstNSI	RCATGY	2 cut(s)	170, 242
BstSFI	CTRYAG	3 cut(s)	60, 264, 275
BstV1I	GCAGC	3 cut(s)	46, 74, 250
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	168
CseI	GACGC	1 cut(s)	221
CviAII	CATG	3 cut(s)	167, 239, 322
CviJI	RGCY	5 cut(s)	59, 90, 253, 263, 414
CviKI_1	RGCY	5 cut(s)	59, 90, 253, 263, 414
DdeI	CTNAG	2 cut(s)	136, 216
DpnI	GATC	2 cut(s)	192, 297
DpnII	GATC	2 cut(s)	190, 295
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	3 cut(s)	170, 242, 325
FaiI	YATR	4 cut(s)	168, 240, 257, 323
FaqI	GGGAC	2 cut(s)	224, 332
FatI	CATG	3 cut(s)	166, 238, 321
Fnu4HI	GCNGC	3 cut(s)	60, 63, 264
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	60, 63, 264
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	3 cut(s)	60, 63, 264
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	170, 242, 325
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	99, 232
Hpy188I	TCNGA	3 cut(s)	31, 76, 419
Hpy188III	TCNNGA	4 cut(s)	6, 85, 343, 379
Hpy8I	GTNNAC	2 cut(s)	99, 232
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	118, 173
HpyCH4III	ACNGT	2 cut(s)	112, 349
HpyCH4IV	ACGT	3 cut(s)	120, 368, 375
HpyCH4V	TGCA	5 cut(s)	62, 159, 170, 266, 391
HpyF3I	CTNAG	2 cut(s)	136, 216
HpySE526I	ACGT	3 cut(s)	120, 368, 375
Hsp92II	CATG	3 cut(s)	170, 242, 325
Kzo9I	GATC	2 cut(s)	190, 295
LpnPI	CCDG	1 cut(s)	328
Lsp1109I	GCAGC	3 cut(s)	46, 74, 250
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	3 cut(s)	120, 368, 375
MalI	GATC	2 cut(s)	192, 297
MboI	GATC	2 cut(s)	190, 295
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	3 cut(s)	287, 299, 398
MnlI	CCTC	2 cut(s)	40, 388
MseI	TTAA	5 cut(s)	282, 302, 327, 372, 401
NdeII	GATC	2 cut(s)	190, 295
NlaIII	CATG	3 cut(s)	170, 242, 325
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	2 cut(s)	170, 242
PaeI	GCATGC	1 cut(s)	170
PciI	ACATGT	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	61, 64, 265
PscI	ACATGT	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	2 cut(s)	64, 268
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	5 cut(s)	282, 302, 327, 372, 401
SatI	GCNGC	3 cut(s)	60, 63, 264
Sau3AI	GATC	2 cut(s)	190, 295
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	8 cut(s)	51, 61, 92, 123, 147, 255, 371, 378
SfcI	CTRYAG	3 cut(s)	60, 264, 275
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	3 cut(s)	287, 299, 398
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	112, 349
TaiI	ACGT	3 cut(s)	123, 371, 378
TaqI	TCGA	2 cut(s)	45, 378
TasI	AATT	3 cut(s)	287, 299, 398
Tru1I	TTAA	5 cut(s)	282, 302, 327, 372, 401
Tru9I	TTAA	5 cut(s)	282, 302, 327, 372, 401
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	3 cut(s)	59, 62, 263
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	117
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	2 cut(s)	170, 242
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.