Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017999

Physical Location & Seq

Genomic Coordinates Reverse (-)

86821335 .. 86821724

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCGAGAGTTTTCAAACTGAAAAGTTCTGACAATGAAACATTCGAGGTTGAAGAAGCTGCAGCACTACTCTCTGAAACCATCAAGAGCTCATCGTCCACCGAGATTACAGTGCCAAACGTGAAGGCGGAAATCTTAGGCAAGGTGGTGGAATGGTGCTACAAGCATGCAGAGAGTGAAGGCACCAAAGATCAACTCATCAAAGAGTGGGACGCTGAGTTCGTTAGTGTCGACCAAGATGTTCTGTTCAAGCTCATAACGGCTGCAGACTATCTACAGATTAAGGAATTGGTGGATCAATTAACTCAAAGAGTTGGGGACATGATTAAGGCAAAGACATTCAAGCCGGTGGAAATGACTTACCCAACGTTTAACGTCGAGAGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

129

Amino Acids

14.59

Weight (kDa)

4.69

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	4 - 57	5.9e-14	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017999)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07431
prunus_persica	Prupe.4G065500_v2.0.a1
pyrus_communis	pycom08g00800
rosa_laevigata	RLG00000031833
rosa_multiflora	Rmu_sc0009975.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065020
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083900 Rh5CG097500 Rh5DG084000
rosa_wichuraiana	Rw5G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	128
AclI	AACGTT	1 cut(s)	368
AclWI	GGATC	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	16, 53, 250, 343
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	4 cut(s)	59, 90, 253, 384
AluI	AGCT	4 cut(s)	59, 90, 253, 384
Alw21I	GWGCWC	2 cut(s)	92, 386
AlwI	GGATC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	59, 62, 263
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	92, 386
Bbv12I	GWGCWC	2 cut(s)	92, 386
BbvI	GCAGC	3 cut(s)	46, 74, 250
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	276
BfmI	CTRYAG	3 cut(s)	60, 264, 275
BisI	GCNGC	3 cut(s)	60, 63, 264
BlsI	GCNGC	3 cut(s)	61, 64, 265
BmiI	GGNNCC	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	46, 74, 250
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	2 cut(s)	92, 386
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	2 cut(s)	224, 332
BsmFI	GGGAC	2 cut(s)	224, 332
Bsp1286I	GDGCHC	2 cut(s)	92, 386
Bsp143I	GATC	2 cut(s)	190, 295
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	64, 268
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	346
BssMI	GATC	2 cut(s)	190, 295
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	136, 216
BstKTI	GATC	2 cut(s)	193, 298
BstMBI	GATC	2 cut(s)	190, 295
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	3 cut(s)	60, 264, 275
BstV1I	GCAGC	3 cut(s)	46, 74, 250
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	346
CseI	GACGC	1 cut(s)	221
CviAII	CATG	2 cut(s)	167, 322
CviJI	RGCY	6 cut(s)	59, 90, 253, 263, 346, 384
CviKI_1	RGCY	6 cut(s)	59, 90, 253, 263, 346, 384
DdeI	CTNAG	2 cut(s)	136, 216
DpnI	GATC	2 cut(s)	192, 297
DpnII	GATC	2 cut(s)	190, 295
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	2 cut(s)	90, 384
Eco24I	GRGCYC	2 cut(s)	92, 386
Eco53kI	GAGCTC	2 cut(s)	90, 384
EcoICRI	GAGCTC	2 cut(s)	90, 384
EcoT38I	GRGCYC	2 cut(s)	92, 386
FaeI	CATG	2 cut(s)	170, 325
FaiI	YATR	3 cut(s)	168, 257, 323
FaqI	GGGAC	2 cut(s)	224, 332
FatI	CATG	2 cut(s)	166, 321
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	60, 63, 264
FriOI	GRGCYC	2 cut(s)	92, 386
Fsp4HI	GCNGC	3 cut(s)	60, 63, 264
GluI	GCNGC	3 cut(s)	60, 63, 264
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	170, 325
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	99, 232
Hpy188I	TCNGA	2 cut(s)	31, 76
Hpy188III	TCNNGA	4 cut(s)	6, 85, 379, 387
Hpy8I	GTNNAC	2 cut(s)	99, 232
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	118, 173
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	3 cut(s)	120, 368, 375
HpyCH4V	TGCA	3 cut(s)	62, 170, 266
HpyF3I	CTNAG	2 cut(s)	136, 216
HpySE526I	ACGT	3 cut(s)	120, 368, 375
Hsp92II	CATG	2 cut(s)	170, 325
Kzo9I	GATC	2 cut(s)	190, 295
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	1 cut(s)	360
Lsp1109I	GCAGC	3 cut(s)	46, 74, 250
MaeII	ACGT	3 cut(s)	120, 368, 375
MalI	GATC	2 cut(s)	192, 297
MboI	GATC	2 cut(s)	190, 295
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	92, 386
MluCI	AATT	2 cut(s)	287, 299
MnlI	CCTC	1 cut(s)	40
MseI	TTAA	4 cut(s)	282, 302, 327, 372
MspI	CCGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	190, 295
NlaIII	CATG	2 cut(s)	170, 325
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 228
PkrI	GCNGC	3 cut(s)	61, 64, 265
Psp124BI	GAGCTC	2 cut(s)	92, 386
Psp1406I	AACGTT	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	2 cut(s)	64, 268
SacI	GAGCTC	2 cut(s)	92, 386
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	282, 302, 327, 372
SatI	GCNGC	3 cut(s)	60, 63, 264
Sau3AI	GATC	2 cut(s)	190, 295
SduI	GDGCHC	2 cut(s)	92, 386
SetI	ASST	9 cut(s)	51, 61, 92, 123, 147, 255, 371, 378, 386
SfcI	CTRYAG	3 cut(s)	60, 264, 275
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	2 cut(s)	287, 299
SsiI	CCGC	1 cut(s)	128
SstI	GAGCTC	2 cut(s)	92, 386
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	3 cut(s)	123, 371, 378
TaqI	TCGA	4 cut(s)	5, 45, 231, 378
TasI	AATT	2 cut(s)	287, 299
Tru1I	TTAA	4 cut(s)	282, 302, 327, 372
Tru9I	TTAA	4 cut(s)	282, 302, 327, 372
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	3 cut(s)	59, 62, 263
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	117
XceI	RCATGY	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.