FvH4_3g08570

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017621
Physical Location & Seq
Reverse (-)
5003259 .. 5004683
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08570.t1

Sequence Viewer

Length: 1239 bp
ATGGAAAAATGCTTCGTCTGCAAAGATGGTGGGCGTTTAGTGCTATGTGACCACGAAGGCTGCTCAAAAGTTTATCATCCTAAATGGAAGGACAAAGAAGGTCTCTGCAAGGAGTGTTTGGAGCTAGTTAGGCTCGCGAAATCAAACTCGGAATGTAGACCAGATGGAAAGAGATTAGACTTCGAGAATAGGGATACATTTGAGTGTCGATTCAAGGAGTGTTGGGAAATCATAAAGGAAAATGAGGGCTTGACTTTGGATGATGTCTATTCCCCAAATACATGTAGTAACGATGATGATGACGAAGATGATGATCATATAGAAGCTGACAATTCAATATTGGGAAAACGGAAGGCACAAGCAGAAGAGATTGGAATTAGTGACGACGATGATGATGATGATCATCTACAATTTCAGAAGTCTATATTACAAAAGAGGCAGAAGGTAGAAACAAAATTTATGGGATGGGGATCAGAACCTCTGATTGGGTTCCTCAAATCCGTTAAGAAAGATACAAGCAAGCAATTATCACAACGTGAGTTGGGATCTGCAATCTACGAGTATGTCATGGATAGACACCTTCTTGAGTACACAAATAAGAAGACAAAGGTTAGATGTGACTGGAGGCTGAATAAAATTTTCAGAAAGGAAGAGGTAGATGTGGTCGATGTGTTTAGTTTTCTGGATCAACATTTGAAGAATGTTGAAGGAACCTGTTATGCAGCTATAGTAGCTAATAACATGAAGCTTGTCTATTTGAGAAGGAGCTTAGTGGAGAAGTTGATGTTGGAGCAGCCCGAAAGTTGGGAGAGAAAGGTGGTGGGAAGCTTTGTGAGAGTGGAAAATGCTGAAGGAAATAAGTCAAATAACTCCTCTGATCACAAACTCATACAAGTTAAGGGCATTATTAACAAAAATGAAGAGACTTTTCTGGAACTAATTGGAAGAGAGGATCCAATTTCGGTTTCTCTGCTATCGGATTGCGACTTCACTAAGGAAGAATGTGAGGATTTGCAACAGAGCCCGGAAATTTGCCTGCTTAGGAGACATACAGTTGCGGAGATTGGTCAAAAGGCAAGAGAGCTACATGAAGATATAACCAAGGATTGGATTGAAAGAGAGTTGGTCCGGCTAGAGGAATGCATTGCTCATGAGAAAAGGGAGAACAGATGGATCAGTGGAGAGTGGAGACTTAAGTGGGTATTGGCGCAAGATAGATATGCTACAACAACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

413

Amino Acids

48.13

Weight (kDa)

5.17

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 160 - 232 5.7e-07 SWIB/MDM2 domain
Plus-3 PF03126 247 - 341 6.8e-10 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08570
rosa_chinensis RchiOBHm_Chr5g0009271
rosa_laevigata RLG00000031643
rosa_multiflora Rmu_sc0006233.1_g000013
rosa_roxburghii Rroxscaffold_1G00066820 Rroxscaffold_1G00067520
rosa_rugosa Rorug04G0441700
rosa_samantha Rh5AG071800 Rh5BG068300 Rh5CG080700 Rh5DG068500
rosa_wichuraiana Rw5G006710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1107
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 1058
AclWI GGATC 6 cut(s) 478, 553, 693, 947, 960, 1181
AcsI RAATTY 3 cut(s) 455, 636, 1029
AcuI CTGAAG 1 cut(s) 870
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 4 cut(s) 485, 804, 1107, 1135
AflII CTTAAG 1 cut(s) 1193
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 5 cut(s) 214, 336, 697, 707, 1115
AjuI GAANNNNNNNTTGG 6 cut(s) 468, 500, 770, 802, 949, 981
AluBI AGCT 9 cut(s) 124, 326, 725, 734, 748, 768, 828, 1084, 1236
AluI AGCT 9 cut(s) 124, 326, 725, 734, 748, 768, 828, 1084, 1236
Alw26I GTCTC 4 cut(s) 107, 917, 1039, 1183
AlwI GGATC 6 cut(s) 478, 553, 693, 947, 960, 1181
ApeKI GCWGC 3 cut(s) 60, 722, 793
ApoI RAATTY 3 cut(s) 455, 636, 1029
AspLEI GCGC 1 cut(s) 1210
AspS9I GGNCC 1 cut(s) 1126
AsuC2I CCSGG 1 cut(s) 1025
AvaII GGWCC 1 cut(s) 1126
BamHI GGATCC 1 cut(s) 952
BanII GRGCYC 1 cut(s) 1025
BbsI GAAGAC 1 cut(s) 608
BbvI GCAGC 3 cut(s) 47, 734, 805
BccI CCATC 4 cut(s) 20, 158, 459, 1164
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 3 cut(s) 313, 400, 877
BcnI CCSGG 1 cut(s) 1025
BcoDI GTCTC 4 cut(s) 107, 917, 1039, 1183
BfaI CTAG 2 cut(s) 125, 1133
BfmI CTRYAG 1 cut(s) 726
BfrI CTTAAG 1 cut(s) 1193
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 3 cut(s) 61, 723, 794
BlsI GCNGC 3 cut(s) 62, 724, 795
Bme1390I CCNGG 1 cut(s) 1025
Bme18I GGWCC 1 cut(s) 1126
BmgT120I GGNCC 1 cut(s) 1126
BmiI GGNNCC 3 cut(s) 491, 712, 954
BmrFI CCNGG 1 cut(s) 1025
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 643
Bpu10I CCTNAGC 1 cut(s) 1040
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 1025
BsaBI GATNNNNATC 4 cut(s) 312, 399, 402, 469
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 1101
Bsc4I CCNNNNNNNGG 4 cut(s) 485, 804, 1107, 1135
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 1143
Bse8I GATNNNNATC 4 cut(s) 312, 399, 402, 469
BseDI CCNNGG 1 cut(s) 1101
BseGI GGATG 3 cut(s) 76, 265, 470
BseJI GATNNNNATC 4 cut(s) 312, 399, 402, 469
BseLI CCNNNNNNNGG 4 cut(s) 485, 804, 1107, 1135
BseMI GCAATG 1 cut(s) 1143
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 862
BseXI GCAGC 3 cut(s) 47, 734, 805
Bsh1236I CGCG 1 cut(s) 137
BsiSI CCGG 2 cut(s) 1025, 1129
BslI CCNNNNNNNGG 4 cut(s) 485, 804, 1107, 1135
BsmAI GTCTC 4 cut(s) 107, 917, 1039, 1183
BsmI GAATGC 1 cut(s) 1145
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 1025
Bsp143I GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
Bsp68I TCGCGA 1 cut(s) 137
BspACI CCGC 1 cut(s) 1058
BspFNI CGCG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 1150
BspLI GGNNCC 3 cut(s) 491, 712, 954
BspPI GGATC 6 cut(s) 478, 553, 693, 947, 960, 1181
BspTI CTTAAG 1 cut(s) 1193
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 1143
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 1 cut(s) 1101
BssMI GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
BssT1I CCWWGG 1 cut(s) 1101
Bst4CI ACNGT 1 cut(s) 1054
Bst6I CTCTTC 4 cut(s) 360, 645, 915, 940
BstAFI CTTAAG 1 cut(s) 1193
BstC8I GCNNGC 3 cut(s) 135, 521, 1037
BstDEI CTNAG 3 cut(s) 769, 993, 1040
BstF5I GGATG 3 cut(s) 76, 265, 470
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 1210
BstKTI GATC 8 cut(s) 316, 403, 473, 548, 688, 880, 955, 1176
BstMAI GTCTC 4 cut(s) 107, 917, 1039, 1183
BstMBI GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
BstMWI GCNNNNNNNGC 4 cut(s) 18, 40, 130, 731
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 1023
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 3 cut(s) 47, 734, 805
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 2 cut(s) 545, 952
BstYI RGATCY 2 cut(s) 545, 952
BsuI GTATCC 1 cut(s) 187
BtsCI GGATG 3 cut(s) 76, 265, 470
BtsIMutI CAGTG 1 cut(s) 1183
BtuMI TCGCGA 1 cut(s) 137
Cac8I GCNNGC 3 cut(s) 135, 521, 1037
CciI TCATGA 1 cut(s) 1150
CfoI GCGC 1 cut(s) 1210
Cfr13I GGNCC 1 cut(s) 1126
Csp6I GTAC 1 cut(s) 589
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 5 cut(s) 282, 568, 742, 1088, 1151
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 3 cut(s) 769, 993, 1040
DpnI GATC 8 cut(s) 315, 402, 472, 547, 687, 879, 954, 1175
DpnII GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
DraIII CACNNNGTG 1 cut(s) 536
Eam1104I CTCTTC 4 cut(s) 360, 645, 915, 940
EarI CTCTTC 4 cut(s) 360, 645, 915, 940
Eco130I CCWWGG 1 cut(s) 1101
Eco24I GRGCYC 1 cut(s) 1025
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 1126
Eco57I CTGAAG 1 cut(s) 870
EcoT14I CCWWGG 1 cut(s) 1101
EcoT22I ATGCAT 1 cut(s) 1145
EcoT38I GRGCYC 1 cut(s) 1025
ErhI CCWWGG 1 cut(s) 1101
FaeI CATG 5 cut(s) 285, 571, 745, 1091, 1154
FatI CATG 5 cut(s) 281, 567, 741, 1087, 1150
FbaI TGATCA 3 cut(s) 313, 400, 877
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 61, 723, 794
FokI GGATG 3 cut(s) 63, 272, 477
FriOI GRGCYC 1 cut(s) 1025
Fsp4HI GCNGC 3 cut(s) 61, 723, 794
FspBI CTAG 2 cut(s) 125, 1133
GlaI GCGC 1 cut(s) 1209
GluI GCNGC 3 cut(s) 61, 723, 794
GsuI CTGGAG 1 cut(s) 643
HapII CCGG 2 cut(s) 1025, 1129
HhaI GCGC 1 cut(s) 1210
Hin1II CATG 5 cut(s) 285, 571, 745, 1091, 1154
Hin6I GCGC 1 cut(s) 1208
HinP1I GCGC 1 cut(s) 1208
HindIII AAGCTT 2 cut(s) 746, 826
HinfI GANTC 1 cut(s) 210
HpaII CCGG 2 cut(s) 1025, 1129
Hpy166II GTNNAC 2 cut(s) 158, 591
Hpy188I TCNGA 7 cut(s) 151, 417, 475, 483, 644, 877, 979
Hpy188III TCNNGA 6 cut(s) 136, 184, 584, 683, 932, 1151
Hpy8I GTNNAC 2 cut(s) 158, 591
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 9 cut(s) 50, 82, 92, 346, 436, 590, 701, 756, 845
HpyCH4III ACNGT 1 cut(s) 1054
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 6 cut(s) 21, 108, 551, 722, 1015, 1143
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 40, 130, 731
HpyF3I CTNAG 3 cut(s) 769, 993, 1040
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 5 cut(s) 285, 571, 745, 1091, 1154
HspAI GCGC 1 cut(s) 1208
Ksp22I TGATCA 3 cut(s) 313, 400, 877
Kzo9I GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
LmnI GCTCC 3 cut(s) 121, 765, 790
LpnPI CCDG 8 cut(s) 174, 607, 668, 727, 917, 1038, 1049, 1142
Lsp1109I GCAGC 3 cut(s) 47, 734, 805
MaeI CTAG 2 cut(s) 125, 1133
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 4 cut(s) 47, 287, 380, 617
MalI GATC 8 cut(s) 315, 402, 472, 547, 687, 879, 954, 1175
MboI GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
MboII GAAGA 9 cut(s) 317, 377, 613, 662, 709, 932, 957, 1010, 1103
MflI RGATCY 2 cut(s) 545, 952
MhlI GDGCHC 1 cut(s) 1025
MluCI AATT 9 cut(s) 331, 375, 410, 455, 524, 636, 939, 957, 1029
MmeI TCCRAC 1 cut(s) 768
Mph1103I ATGCAT 1 cut(s) 1145
MseI TTAA 4 cut(s) 504, 897, 909, 1194
MslI CAYNNNNRTG 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 1236
MspCI CTTAAG 1 cut(s) 1193
MspI CCGG 2 cut(s) 1025, 1129
MspR9I CCNGG 1 cut(s) 1025
Mva1269I GAATGC 1 cut(s) 1145
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 18, 40, 130, 731
NciI CCSGG 1 cut(s) 1025
NdeII GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
NlaIII CATG 5 cut(s) 285, 571, 745, 1091, 1154
NlaIV GGNNCC 3 cut(s) 491, 712, 954
NmuCI GTSAC 3 cut(s) 47, 380, 617
NruI TCGCGA 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 1145
NspI RCATGY 1 cut(s) 285
PagI TCATGA 1 cut(s) 1150
PciI ACATGT 1 cut(s) 281
PctI GAATGC 1 cut(s) 1145
PfeI GAWTC 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 1107
PkrI GCNGC 3 cut(s) 62, 724, 795
PscI ACATGT 1 cut(s) 281
PspN4I GGNNCC 3 cut(s) 491, 712, 954
PspPI GGNCC 1 cut(s) 1126
PsuI RGATCY 2 cut(s) 545, 952
PvuII CAGCTG 1 cut(s) 1236
RruI TCGCGA 1 cut(s) 137
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 202
SaqAI TTAA 4 cut(s) 504, 897, 909, 1194
SatI GCNGC 3 cut(s) 61, 723, 794
Sau3AI GATC 8 cut(s) 313, 400, 470, 545, 685, 877, 952, 1173
Sau96I GGNCC 1 cut(s) 1126
ScrFI CCNGG 1 cut(s) 1025
SduI GDGCHC 1 cut(s) 1025
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 1 cut(s) 1126
SmiMI CAYNNNNRTG 1 cut(s) 202
SmlI CTYRAG 2 cut(s) 584, 1193
SmoI CTYRAG 2 cut(s) 584, 1193
Sse9I AATT 9 cut(s) 331, 375, 410, 455, 524, 636, 939, 957, 1029
SsiI CCGC 1 cut(s) 1058
SspI AATATT 1 cut(s) 339
SspMI CTAG 2 cut(s) 125, 1133
StyD4I CCNGG 1 cut(s) 1023
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 1 cut(s) 1054
TaiI ACGT 1 cut(s) 538
TaqI TCGA 3 cut(s) 183, 208, 666
TasI AATT 9 cut(s) 331, 375, 410, 455, 524, 636, 939, 957, 1029
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 4 cut(s) 504, 897, 909, 1194
Tru9I TTAA 4 cut(s) 504, 897, 909, 1194
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 3 cut(s) 47, 380, 617
TseI GCWGC 3 cut(s) 60, 722, 793
Tsp45I GTSAC 3 cut(s) 47, 380, 617
TspDTI ATGAA 3 cut(s) 758, 933, 1104
TspGWI ACGGA 2 cut(s) 364, 490
TspRI CASTG 1 cut(s) 1183
Van91I CCANNNNNTGG 1 cut(s) 1107
Vha464I CTTAAG 1 cut(s) 1193
VpaK11BI GGWCC 1 cut(s) 1126
XapI RAATTY 3 cut(s) 455, 636, 1029
XceI RCATGY 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 2 cut(s) 125, 1133
Zsp2I ATGCAT 1 cut(s) 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.