zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g08570 |
| rosa_chinensis | RchiOBHm_Chr5g0009271 |
| rosa_laevigata | RLG00000031643 |
| rosa_multiflora | Rmu_sc0006233.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00066820 Rroxscaffold_1G00067520 |
| rosa_rugosa | Rorug04G0441700 |
| rosa_samantha | Rh5AG071800 Rh5BG068300 Rh5CG080700 Rh5DG068500 |
| rosa_wichuraiana | Rw5G006710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 569 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1296 |
| AccI | GTMKAC | 1 cut(s) | 945 |
| AciI | CCGC | 1 cut(s) | 335 |
| AclWI | GGATC | 7 cut(s) | 187, 670, 745, 885, 1136, 1149, 1370 |
| AcsI | RAATTY | 3 cut(s) | 647, 828, 1218 |
| AfaI | GTAC | 3 cut(s) | 214, 247, 782 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 307, 412, 996, 1296, 1324 |
| AgsI | TTSAA | 7 cut(s) | 401, 412, 899, 1043, 1152, 1304, 1438 |
| AhlI | ACTAGT | 2 cut(s) | 251, 926 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 962, 994 |
| AluBI | AGCT | 6 cut(s) | 138, 195, 322, 940, 960, 1273 |
| AluI | AGCT | 6 cut(s) | 138, 195, 322, 940, 960, 1273 |
| Alw26I | GTCTC | 2 cut(s) | 364, 1228 |
| AlwI | GGATC | 7 cut(s) | 187, 670, 745, 885, 1136, 1149, 1370 |
| Ama87I | CYCGRG | 1 cut(s) | 776 |
| AoxI | GGCC | 1 cut(s) | 298 |
| ApeKI | GCWGC | 4 cut(s) | 72, 257, 985, 1273 |
| ApoI | RAATTY | 3 cut(s) | 647, 828, 1218 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1051 |
| AspLEI | GCGC | 1 cut(s) | 1392 |
| AsuC2I | CCSGG | 1 cut(s) | 1214 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 506 |
| AvaI | CYCGRG | 1 cut(s) | 776 |
| BamHI | GGATCC | 1 cut(s) | 1141 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 929, 961 |
| BauI | CACGAG | 1 cut(s) | 1277 |
| BbsI | GAAGAC | 1 cut(s) | 800 |
| BbvCI | CCTCAGC | 1 cut(s) | 1229 |
| BbvI | GCAGC | 4 cut(s) | 59, 244, 997, 1260 |
| BccI | CCATC | 5 cut(s) | 32, 356, 485, 651, 1353 |
| BciVI | GTATCC | 1 cut(s) | 385 |
| BclI | TGATCA | 3 cut(s) | 508, 592, 1060 |
| BcnI | CCSGG | 1 cut(s) | 1214 |
| BcoDI | GTCTC | 2 cut(s) | 364, 1228 |
| BcuI | ACTAGT | 2 cut(s) | 251, 926 |
| BfaI | CTAG | 4 cut(s) | 252, 323, 374, 927 |
| BfmI | CTRYAG | 2 cut(s) | 814, 918 |
| BfuI | GTATCC | 1 cut(s) | 385 |
| BglII | AGATCT | 1 cut(s) | 1372 |
| BisI | GCNGC | 4 cut(s) | 73, 258, 986, 1274 |
| BlsI | GCNGC | 4 cut(s) | 74, 259, 987, 1275 |
| BmcAI | AGTACT | 1 cut(s) | 247 |
| Bme1390I | CCNGG | 1 cut(s) | 1214 |
| BmeT110I | CYCGRG | 1 cut(s) | 776 |
| BmiI | GGNNCC | 2 cut(s) | 683, 1143 |
| BmrFI | CCNGG | 1 cut(s) | 1214 |
| BmsI | GCATC | 3 cut(s) | 733, 923, 1392 |
| BpiI | GAAGAC | 1 cut(s) | 800 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1229 |
| BpuEI | CTTGAG | 1 cut(s) | 970 |
| BpuMI | CCSGG | 1 cut(s) | 1214 |
| Bsa29I | ATCGAT | 1 cut(s) | 762 |
| BsaAI | YACGTR | 1 cut(s) | 220 |
| BsaBI | GATNNNNATC | 4 cut(s) | 507, 591, 594, 661 |
| BsaJI | CCNNGG | 1 cut(s) | 1290 |
| BsaWI | WCCGGW | 1 cut(s) | 1317 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 5, 35, 1008, 1038 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 307, 412, 996, 1296, 1324 |
| Bse8I | GATNNNNATC | 4 cut(s) | 507, 591, 594, 661 |
| BseCI | ATCGAT | 1 cut(s) | 762 |
| BseDI | CCNNGG | 1 cut(s) | 1290 |
| BseGI | GGATG | 4 cut(s) | 88, 463, 662, 1364 |
| BseJI | GATNNNNATC | 4 cut(s) | 507, 591, 594, 661 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 307, 412, 996, 1296, 1324 |
| BseMII | CTCAG | 4 cut(s) | 255, 812, 1173, 1220 |
| BseRI | GAGGAG | 1 cut(s) | 1246 |
| BseXI | GCAGC | 4 cut(s) | 59, 244, 997, 1260 |
| BsgI | GTGCAG | 1 cut(s) | 1259 |
| BshFI | GGCC | 1 cut(s) | 300 |
| BshVI | ATCGAT | 1 cut(s) | 762 |
| BsiHKCI | CYCGRG | 1 cut(s) | 776 |
| BsiSI | CCGG | 2 cut(s) | 1214, 1318 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 307, 412, 996, 1296, 1324 |
| BsmAI | GTCTC | 2 cut(s) | 364, 1228 |
| BsmI | GAATGC | 1 cut(s) | 407 |
| BsnI | GGCC | 1 cut(s) | 300 |
| BsoBI | CYCGRG | 1 cut(s) | 776 |
| Bsp1407I | TGTACA | 1 cut(s) | 212 |
| BspACI | CCGC | 1 cut(s) | 335 |
| BspANI | GGCC | 1 cut(s) | 300 |
| BspCNI | CTCAG | 4 cut(s) | 256, 813, 1174, 1221 |
| BspDI | ATCGAT | 1 cut(s) | 762 |
| BspHI | TCATGA | 1 cut(s) | 1339 |
| BspLI | GGNNCC | 2 cut(s) | 683, 1143 |
| BspPI | GGATC | 7 cut(s) | 187, 670, 745, 885, 1136, 1149, 1370 |
| BsrGI | TGTACA | 1 cut(s) | 212 |
| BssECI | CCNNGG | 1 cut(s) | 1290 |
| BssSI | CACGAG | 1 cut(s) | 1277 |
| BssT1I | CCWWGG | 1 cut(s) | 1290 |
| Bst2BI | CACGAG | 1 cut(s) | 1277 |
| Bst4CI | ACNGT | 2 cut(s) | 581, 694 |
| Bst6I | CTCTTC | 2 cut(s) | 555, 837 |
| BstAUI | TGTACA | 1 cut(s) | 212 |
| BstBAI | YACGTR | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 2 cut(s) | 333, 1226 |
| BstDEI | CTNAG | 6 cut(s) | 264, 821, 961, 1092, 1182, 1229 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 305 |
| BstF5I | GGATG | 4 cut(s) | 88, 463, 662, 1364 |
| BstHHI | GCGC | 1 cut(s) | 1392 |
| BstMAI | GTCTC | 2 cut(s) | 364, 1228 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 30, 52, 135, 201, 328 |
| BstSCI | CCNGG | 1 cut(s) | 1212 |
| BstSFI | CTRYAG | 2 cut(s) | 814, 918 |
| BstSNI | TACGTA | 1 cut(s) | 220 |
| BstV1I | GCAGC | 4 cut(s) | 59, 244, 997, 1260 |
| BstV2I | GAAGAC | 1 cut(s) | 800 |
| BstX2I | RGATCY | 3 cut(s) | 737, 1141, 1372 |
| BstYI | RGATCY | 3 cut(s) | 737, 1141, 1372 |
| Bsu15I | ATCGAT | 1 cut(s) | 762 |
| BsuI | GTATCC | 1 cut(s) | 385 |
| BsuRI | GGCC | 1 cut(s) | 300 |
| BsuTUI | ATCGAT | 1 cut(s) | 762 |
| BtsCI | GGATG | 4 cut(s) | 88, 463, 662, 1364 |
| BtsIMutI | CAGTG | 4 cut(s) | 272, 586, 1179, 1372 |
| Cac8I | GCNNGC | 2 cut(s) | 333, 1226 |
| CciI | TCATGA | 1 cut(s) | 1339 |
| CfoI | GCGC | 1 cut(s) | 1392 |
| ClaI | ATCGAT | 1 cut(s) | 762 |
| CseI | GACGC | 1 cut(s) | 1440 |
| Csp6I | GTAC | 3 cut(s) | 213, 246, 781 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 22, 57 |
| CviAII | CATG | 4 cut(s) | 201, 934, 1340, 1424 |
| CviQI | GTAC | 3 cut(s) | 213, 246, 781 |
| DdeI | CTNAG | 6 cut(s) | 264, 821, 961, 1092, 1182, 1229 |
| Eam1104I | CTCTTC | 2 cut(s) | 555, 837 |
| EarI | CTCTTC | 2 cut(s) | 555, 837 |
| Eco105I | TACGTA | 1 cut(s) | 220 |
| Eco130I | CCWWGG | 1 cut(s) | 1290 |
| Eco147I | AGGCCT | 1 cut(s) | 300 |
| Eco88I | CYCGRG | 1 cut(s) | 776 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 305 |
| EcoT14I | CCWWGG | 1 cut(s) | 1290 |
| EcoT22I | ATGCAT | 1 cut(s) | 916 |
| ErhI | CCWWGG | 1 cut(s) | 1290 |
| FaeI | CATG | 4 cut(s) | 204, 937, 1343, 1427 |
| FatI | CATG | 4 cut(s) | 200, 933, 1339, 1423 |
| FbaI | TGATCA | 3 cut(s) | 508, 592, 1060 |
| FblI | GTMKAC | 1 cut(s) | 945 |
| Fnu4HI | GCNGC | 4 cut(s) | 73, 258, 986, 1274 |
| FokI | GGATG | 4 cut(s) | 75, 470, 669, 1371 |
| Fsp4HI | GCNGC | 4 cut(s) | 73, 258, 986, 1274 |
| FspBI | CTAG | 4 cut(s) | 252, 323, 374, 927 |
| GlaI | GCGC | 1 cut(s) | 1391 |
| GluI | GCNGC | 4 cut(s) | 73, 258, 986, 1274 |
| HaeIII | GGCC | 1 cut(s) | 300 |
| HapII | CCGG | 2 cut(s) | 1214, 1318 |
| HgaI | GACGC | 1 cut(s) | 1440 |
| HhaI | GCGC | 1 cut(s) | 1392 |
| Hin1II | CATG | 4 cut(s) | 204, 937, 1343, 1427 |
| Hin6I | GCGC | 1 cut(s) | 1390 |
| HinP1I | GCGC | 1 cut(s) | 1390 |
| HindIII | AAGCTT | 1 cut(s) | 938 |
| HinfI | GANTC | 5 cut(s) | 338, 408, 676, 1114, 1456 |
| HpaII | CCGG | 2 cut(s) | 1214, 1318 |
| HphI | GGTGA | 2 cut(s) | 221, 506 |
| Hpy166II | GTNNAC | 3 cut(s) | 523, 783, 946 |
| Hpy188III | TCNNGA | 6 cut(s) | 728, 776, 875, 1121, 1340, 1460 |
| Hpy8I | GTNNAC | 3 cut(s) | 523, 783, 946 |
| Hpy99I | CGWCG | 2 cut(s) | 503, 1434 |
| HpyAV | CCTTC | 8 cut(s) | 62, 280, 290, 541, 628, 948, 1037, 1255 |
| HpyCH4III | ACNGT | 2 cut(s) | 581, 694 |
| HpyCH4IV | ACGT | 1 cut(s) | 219 |
| HpyCH4V | TGCA | 7 cut(s) | 33, 306, 743, 914, 1204, 1276, 1332 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 30, 52, 135, 201, 328 |
| HpyF3I | CTNAG | 6 cut(s) | 264, 821, 961, 1092, 1182, 1229 |
| HpySE526I | ACGT | 1 cut(s) | 219 |
| Hsp92II | CATG | 4 cut(s) | 204, 937, 1343, 1427 |
| HspAI | GCGC | 1 cut(s) | 1390 |
| Ksp22I | TGATCA | 3 cut(s) | 508, 592, 1060 |
| LmnI | GCTCC | 3 cut(s) | 319, 957, 982 |
| LpnPI | CCDG | 9 cut(s) | 124, 372, 860, 919, 1106, 1227, 1238, 1331, 1473 |
| Lsp1109I | GCAGC | 4 cut(s) | 59, 244, 997, 1260 |
| LweI | GCATC | 3 cut(s) | 733, 923, 1392 |
| MaeI | CTAG | 4 cut(s) | 252, 323, 374, 927 |
| MaeII | ACGT | 1 cut(s) | 219 |
| MaeIII | GTNAC | 8 cut(s) | 59, 227, 479, 494, 575, 809, 922, 929 |
| MboII | GAAGA | 9 cut(s) | 572, 805, 854, 911, 1047, 1109, 1109, 1199, 1477 |
| MfeI | CAATTG | 1 cut(s) | 1242 |
| MflI | RGATCY | 3 cut(s) | 737, 1141, 1372 |
| MmeI | TCCRAC | 1 cut(s) | 960 |
| Mph1103I | ATGCAT | 1 cut(s) | 916 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1051 |
| MseI | TTAA | 5 cut(s) | 50, 174, 696, 1080, 1322 |
| MslI | CAYNNNNRTG | 1 cut(s) | 400 |
| MspI | CCGG | 2 cut(s) | 1214, 1318 |
| MspR9I | CCNGG | 1 cut(s) | 1214 |
| MunI | CAATTG | 1 cut(s) | 1242 |
| Mva1269I | GAATGC | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 30, 52, 135, 201, 328 |
| NciI | CCSGG | 1 cut(s) | 1214 |
| NlaIII | CATG | 4 cut(s) | 204, 937, 1343, 1427 |
| NlaIV | GGNNCC | 2 cut(s) | 683, 1143 |
| NmeAIII | GCCGAG | 1 cut(s) | 1273 |
| NmuCI | GTSAC | 5 cut(s) | 59, 227, 494, 575, 809 |
| NsiI | ATGCAT | 1 cut(s) | 916 |
| PaeR7I | CTCGAG | 1 cut(s) | 776 |
| PagI | TCATGA | 1 cut(s) | 1339 |
| PceI | AGGCCT | 1 cut(s) | 300 |
| PctI | GAATGC | 1 cut(s) | 407 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1051 |
| PfeI | GAWTC | 5 cut(s) | 338, 408, 676, 1114, 1456 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1296 |
| PkrI | GCNGC | 4 cut(s) | 74, 259, 987, 1275 |
| Ppu21I | YACGTR | 1 cut(s) | 220 |
| PsiI | TTATAA | 1 cut(s) | 569 |
| PspN4I | GGNNCC | 2 cut(s) | 683, 1143 |
| PsuI | RGATCY | 3 cut(s) | 737, 1141, 1372 |
| RsaI | GTAC | 3 cut(s) | 214, 247, 782 |
| RsaNI | GTAC | 3 cut(s) | 213, 246, 781 |
| RseI | CAYNNNNRTG | 1 cut(s) | 400 |
| SaqAI | TTAA | 5 cut(s) | 50, 174, 696, 1080, 1322 |
| SatI | GCNGC | 4 cut(s) | 73, 258, 986, 1274 |
| ScaI | AGTACT | 1 cut(s) | 247 |
| ScrFI | CCNGG | 1 cut(s) | 1214 |
| SfaNI | GCATC | 3 cut(s) | 733, 923, 1392 |
| SfcI | CTRYAG | 2 cut(s) | 814, 918 |
| Sfr274I | CTCGAG | 1 cut(s) | 776 |
| SlaI | CTCGAG | 1 cut(s) | 776 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 400 |
| SmlI | CTYRAG | 2 cut(s) | 776, 949 |
| SmoI | CTYRAG | 2 cut(s) | 776, 949 |
| SnaBI | TACGTA | 1 cut(s) | 220 |
| SpeI | ACTAGT | 2 cut(s) | 251, 926 |
| SseBI | AGGCCT | 1 cut(s) | 300 |
| SsiI | CCGC | 1 cut(s) | 335 |
| SspI | AATATT | 1 cut(s) | 534 |
| SspMI | CTAG | 4 cut(s) | 252, 323, 374, 927 |
| StuI | AGGCCT | 1 cut(s) | 300 |
| StyD4I | CCNGG | 1 cut(s) | 1212 |
| StyI | CCWWGG | 1 cut(s) | 1290 |
| TaaI | ACNGT | 2 cut(s) | 581, 694 |
| TaiI | ACGT | 1 cut(s) | 222 |
| TaqI | TCGA | 4 cut(s) | 381, 762, 777, 858 |
| TatI | WGTACW | 3 cut(s) | 212, 245, 780 |
| TfiI | GAWTC | 5 cut(s) | 338, 408, 676, 1114, 1456 |
| Tru1I | TTAA | 5 cut(s) | 50, 174, 696, 1080, 1322 |
| Tru9I | TTAA | 5 cut(s) | 50, 174, 696, 1080, 1322 |
| TscAI | CASTG | 4 cut(s) | 279, 586, 1186, 1372 |
| TseFI | GTSAC | 5 cut(s) | 59, 227, 494, 575, 809 |
| TseI | GCWGC | 4 cut(s) | 72, 257, 985, 1273 |
| Tsp45I | GTSAC | 5 cut(s) | 59, 227, 494, 575, 809 |
| TspDTI | ATGAA | 3 cut(s) | 16, 950, 1440 |
| TspGWI | ACGGA | 2 cut(s) | 192, 1371 |
| TspRI | CASTG | 4 cut(s) | 279, 586, 1186, 1372 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1296 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 305 |
| XapI | RAATTY | 3 cut(s) | 647, 828, 1218 |
| XhoI | CTCGAG | 1 cut(s) | 776 |
| XmiI | GTMKAC | 1 cut(s) | 945 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1051 |
| XspI | CTAG | 4 cut(s) | 252, 323, 374, 927 |
| ZrmI | AGTACT | 1 cut(s) | 247 |
| Zsp2I | ATGCAT | 1 cut(s) | 916 |