Rmu_sc0006233.1_g000013

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006233.1
OG0017621
Physical Location & Seq
Reverse (-)
69138 .. 70628
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006233.1_g000013.1.cds

Sequence Viewer

Length: 1491 bp
atggaaaactcggaggattggtgcttcatctgcaaagatggtgggcgtttaatgctatgtgactacgaaggctgctcaaaagtttatcatcctaaatgtgtgggaaagagcaaatccatcctcaaaagccaaaagagctgggcttgtaggaagcacttgtgttccgagtgttttaacggatcagtcgcaattagcttctcatgcctttgctgtacatacgtattatgtcacccttgctacacaagtactactagtgctgcttctgcgttttcactgataagagggaaggacaaggaaggcctatgcaaggagtgtttggagctagttaggcttgcggaatcaaactcggaatttagaccagatggaaagagactagacttcgaggatagggatacatttgaatgccgattcaaggagtgttgggaaatcataaaggaaaacgagggcttgactttggatgatgtctattccccaaatagtaacaatgatgatggtgacgacgatgatgatcatatagaagttcacaagtcaatattgggaaaaaggaaggcagaagcagaagagtttataattagtgacagtgatgattatgatcatctacaatttcagaagtctatattactaaaaaagcagaaggtagaagcgaaatttataggatggggatcagaacctctgattcggttcctccaagctgttaagaaagatacaagcaaacaattatcgcatcgtgatttgggatctgcaatctatgagtacgtcatcgatagacactttcttgagtacacaaataagaagacaaaggttagatgtgactataggctgagtaaaattttcggaaaggaagaggtagatgtggtcgatgtatttagttttctggatcaacatttggagaatgttgaagaaacctgttatgcatctatagtaactagtaacatgaagcttgtctacttgagaaggagcttagtggagaagttgatgttggagcagcccgaaagttgggagagaaaggtggtgggaagctttgtgagagtagaaaatgttgaaggaaataattcttctgatcacaaactcatacaagttaagggcataactaaggaagataagaatgatgagattcttctggaactgattgggagagaggatccgatttcaatttctctgctatcggattgcgacttcactgaggaagaatgtgaggatttgcaacgaagcccggaaatttgcctgctgaggagacatacaattgccgagattgagcagaaggcaagagagctgcacgaggatataaacaaggattggattgaaagagagttggaccggttagaggattgcattaatcatgagaaaaggcagaacggatggatcagtggagatctaagtgagtattggctcaagacagagatgctacaacaatcgtctgaacgtgaacgacgcttgaagcaagtgccacaagtgatcccagaaaggaataaaacttgcttgttcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

496

Amino Acids

57.76

Weight (kDa)

5.17

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08570
rosa_chinensis RchiOBHm_Chr5g0009271
rosa_laevigata RLG00000031643
rosa_multiflora Rmu_sc0006233.1_g000013
rosa_roxburghii Rroxscaffold_1G00066820 Rroxscaffold_1G00067520
rosa_rugosa Rorug04G0441700
rosa_samantha Rh5AG071800 Rh5BG068300 Rh5CG080700 Rh5DG068500
rosa_wichuraiana Rw5G006710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AccI GTMKAC 1 cut(s) 945
AciI CCGC 1 cut(s) 335
AclWI GGATC 8 cut(s) 187, 670, 745, 885, 1136, 1149, 1370, 1450
AcsI RAATTY 4 cut(s) 350, 647, 828, 1218
AfaI GTAC 4 cut(s) 214, 247, 755, 782
AfiI CCNNNNNNNGG 4 cut(s) 307, 412, 996, 1324
AgeI ACCGGT 1 cut(s) 1317
AgsI TTSAA 7 cut(s) 401, 412, 899, 1043, 1152, 1304, 1438
AhlI ACTAGT 2 cut(s) 251, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AluBI AGCT 8 cut(s) 138, 195, 322, 692, 940, 960, 1020, 1273
AluI AGCT 8 cut(s) 138, 195, 322, 692, 940, 960, 1020, 1273
Alw26I GTCTC 2 cut(s) 364, 1228
AlwI GGATC 8 cut(s) 187, 670, 745, 885, 1136, 1149, 1370, 1450
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 4 cut(s) 72, 257, 985, 1273
ApoI RAATTY 4 cut(s) 350, 647, 828, 1218
AseI ATTAAT 1 cut(s) 1335
AsiGI ACCGGT 1 cut(s) 1317
Asp700I GAANNNNTTC 1 cut(s) 1051
AspS9I GGNCC 1 cut(s) 1315
AsuC2I CCSGG 1 cut(s) 1214
AsuHPI GGTGA 2 cut(s) 221, 506
AvaII GGWCC 1 cut(s) 1315
BamHI GGATCC 1 cut(s) 1141
BarI GAAGNNNNNNTAC 2 cut(s) 929, 961
BauI CACGAG 1 cut(s) 1277
BbsI GAAGAC 1 cut(s) 800
BbvCI CCTCAGC 1 cut(s) 1229
BbvI GCAGC 4 cut(s) 59, 244, 997, 1260
BccI CCATC 6 cut(s) 32, 125, 356, 485, 651, 1353
BciVI GTATCC 1 cut(s) 385
BclI TGATCA 3 cut(s) 508, 592, 1060
BcnI CCSGG 1 cut(s) 1214
BcoDI GTCTC 2 cut(s) 364, 1228
BcuI ACTAGT 2 cut(s) 251, 926
BfaI CTAG 4 cut(s) 252, 323, 374, 927
BfmI CTRYAG 2 cut(s) 814, 918
BfuI GTATCC 1 cut(s) 385
BglII AGATCT 1 cut(s) 1372
BisI GCNGC 4 cut(s) 73, 258, 986, 1274
BlsI GCNGC 4 cut(s) 74, 259, 987, 1275
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 1214
Bme18I GGWCC 1 cut(s) 1315
BmgT120I GGNCC 1 cut(s) 1315
BmiI GGNNCC 2 cut(s) 683, 1143
BmrFI CCNGG 1 cut(s) 1214
BmsI GCATC 3 cut(s) 733, 923, 1392
BpiI GAAGAC 1 cut(s) 800
Bpu10I CCTNAGC 1 cut(s) 1229
BpuEI CTTGAG 3 cut(s) 797, 970, 1376
BpuMI CCSGG 1 cut(s) 1214
Bsa29I ATCGAT 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 220
BsaBI GATNNNNATC 3 cut(s) 507, 591, 661
BsaWI WCCGGW 1 cut(s) 1317
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 412, 996, 1324
Bse118I RCCGGY 1 cut(s) 1317
Bse8I GATNNNNATC 3 cut(s) 507, 591, 661
BseCI ATCGAT 1 cut(s) 762
BseGI GGATG 5 cut(s) 88, 117, 463, 662, 1364
BseJI GATNNNNATC 3 cut(s) 507, 591, 661
BseLI CCNNNNNNNGG 4 cut(s) 307, 412, 996, 1324
BseMII CTCAG 3 cut(s) 812, 1173, 1220
BseRI GAGGAG 1 cut(s) 1246
BseXI GCAGC 4 cut(s) 59, 244, 997, 1260
BseYI CCCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 1259
BshFI GGCC 1 cut(s) 300
BshTI ACCGGT 1 cut(s) 1317
BshVI ATCGAT 1 cut(s) 762
BsiSI CCGG 2 cut(s) 1214, 1318
BslI CCNNNNNNNGG 4 cut(s) 307, 412, 996, 1324
BsmAI GTCTC 2 cut(s) 364, 1228
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 212
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 3 cut(s) 813, 1174, 1221
BspDI ATCGAT 1 cut(s) 762
BspHI TCATGA 1 cut(s) 1339
BspLI GGNNCC 2 cut(s) 683, 1143
BspPI GGATC 8 cut(s) 187, 670, 745, 885, 1136, 1149, 1370, 1450
BsrFI RCCGGY 1 cut(s) 1317
BsrGI TGTACA 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 1317
BssSI CACGAG 1 cut(s) 1277
Bst2BI CACGAG 1 cut(s) 1277
Bst4CI ACNGT 1 cut(s) 581
Bst6I CTCTTC 2 cut(s) 555, 837
BstAUI TGTACA 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 333, 1226
BstDEI CTNAG 6 cut(s) 821, 961, 1092, 1182, 1229, 1376
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 5 cut(s) 88, 117, 463, 662, 1364
BstMAI GTCTC 2 cut(s) 364, 1228
BstMWI GCNNNNNNNGC 6 cut(s) 30, 52, 135, 201, 263, 328
BstSCI CCNGG 1 cut(s) 1212
BstSFI CTRYAG 2 cut(s) 814, 918
BstSNI TACGTA 1 cut(s) 220
BstV1I GCAGC 4 cut(s) 59, 244, 997, 1260
BstV2I GAAGAC 1 cut(s) 800
BstX2I RGATCY 3 cut(s) 737, 1141, 1372
BstYI RGATCY 3 cut(s) 737, 1141, 1372
Bsu15I ATCGAT 1 cut(s) 762
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 762
BtsCI GGATG 5 cut(s) 88, 117, 463, 662, 1364
BtsIMutI CAGTG 4 cut(s) 272, 586, 1179, 1372
Cac8I GCNNGC 2 cut(s) 333, 1226
CciI TCATGA 1 cut(s) 1339
Cfr10I RCCGGY 1 cut(s) 1317
Cfr13I GGNCC 1 cut(s) 1315
ClaI ATCGAT 1 cut(s) 762
CseI GACGC 1 cut(s) 1440
Csp6I GTAC 4 cut(s) 213, 246, 754, 781
CspAI ACCGGT 1 cut(s) 1317
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 3 cut(s) 201, 934, 1340
CviQI GTAC 4 cut(s) 213, 246, 754, 781
DdeI CTNAG 6 cut(s) 821, 961, 1092, 1182, 1229, 1376
Eam1104I CTCTTC 2 cut(s) 555, 837
EarI CTCTTC 2 cut(s) 555, 837
Eco105I TACGTA 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 1315
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoT22I ATGCAT 1 cut(s) 916
FaeI CATG 3 cut(s) 204, 937, 1343
FatI CATG 3 cut(s) 200, 933, 1339
FbaI TGATCA 3 cut(s) 508, 592, 1060
FblI GTMKAC 1 cut(s) 945
Fnu4HI GCNGC 4 cut(s) 73, 258, 986, 1274
FokI GGATG 5 cut(s) 75, 104, 470, 669, 1371
Fsp4HI GCNGC 4 cut(s) 73, 258, 986, 1274
FspBI CTAG 4 cut(s) 252, 323, 374, 927
GluI GCNGC 4 cut(s) 73, 258, 986, 1274
GsaI CCCAGC 1 cut(s) 142
HaeIII GGCC 1 cut(s) 300
HapII CCGG 2 cut(s) 1214, 1318
HgaI GACGC 1 cut(s) 1440
Hin1II CATG 3 cut(s) 204, 937, 1343
HindIII AAGCTT 2 cut(s) 938, 1018
HinfI GANTC 4 cut(s) 338, 408, 676, 1114
HpaII CCGG 2 cut(s) 1214, 1318
HphI GGTGA 2 cut(s) 221, 506
Hpy166II GTNNAC 4 cut(s) 523, 783, 946, 1427
Hpy188III TCNNGA 6 cut(s) 728, 776, 875, 1121, 1340, 1393
Hpy8I GTNNAC 4 cut(s) 523, 783, 946, 1427
Hpy99I CGWCG 2 cut(s) 503, 1434
HpyAV CCTTC 8 cut(s) 62, 280, 290, 541, 628, 948, 1037, 1255
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 3 cut(s) 219, 756, 1423
HpyCH4V TGCA 7 cut(s) 33, 306, 743, 914, 1204, 1276, 1332
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 52, 135, 201, 263, 328
HpyF3I CTNAG 6 cut(s) 821, 961, 1092, 1182, 1229, 1376
HpySE526I ACGT 3 cut(s) 219, 756, 1423
Hsp92II CATG 3 cut(s) 204, 937, 1343
Ksp22I TGATCA 3 cut(s) 508, 592, 1060
LmnI GCTCC 3 cut(s) 319, 957, 982
LpnPI CCDG 9 cut(s) 124, 372, 860, 919, 1106, 1227, 1238, 1331, 1473
Lsp1109I GCAGC 4 cut(s) 59, 244, 997, 1260
LweI GCATC 3 cut(s) 733, 923, 1392
MaeI CTAG 4 cut(s) 252, 323, 374, 927
MaeII ACGT 3 cut(s) 219, 756, 1423
MaeIII GTNAC 8 cut(s) 59, 227, 479, 494, 575, 809, 922, 929
MboII GAAGA 9 cut(s) 572, 805, 854, 911, 1047, 1109, 1109, 1199, 1477
MfeI CAATTG 1 cut(s) 1242
MflI RGATCY 3 cut(s) 737, 1141, 1372
MmeI TCCRAC 2 cut(s) 960, 1293
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 1 cut(s) 1051
MseI TTAA 5 cut(s) 50, 174, 696, 1080, 1335
MslI CAYNNNNRTG 1 cut(s) 400
MspI CCGG 2 cut(s) 1214, 1318
MspR9I CCNGG 1 cut(s) 1214
MunI CAATTG 1 cut(s) 1242
Mva1269I GAATGC 1 cut(s) 407
MwoI GCNNNNNNNGC 6 cut(s) 30, 52, 135, 201, 263, 328
NciI CCSGG 1 cut(s) 1214
NlaIII CATG 3 cut(s) 204, 937, 1343
NlaIV GGNNCC 2 cut(s) 683, 1143
NmeAIII GCCGAG 1 cut(s) 1273
NmuCI GTSAC 5 cut(s) 59, 227, 494, 575, 809
NsiI ATGCAT 1 cut(s) 916
PagI TCATGA 1 cut(s) 1339
PceI AGGCCT 1 cut(s) 300
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 1051
PfeI GAWTC 4 cut(s) 338, 408, 676, 1114
PinAI ACCGGT 1 cut(s) 1317
PkrI GCNGC 4 cut(s) 74, 259, 987, 1275
Ppu21I YACGTR 1 cut(s) 220
PshBI ATTAAT 1 cut(s) 1335
PsiI TTATAA 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 683, 1143
PspPI GGNCC 1 cut(s) 1315
PsuI RGATCY 3 cut(s) 737, 1141, 1372
RsaI GTAC 4 cut(s) 214, 247, 755, 782
RsaNI GTAC 4 cut(s) 213, 246, 754, 781
RseI CAYNNNNRTG 1 cut(s) 400
SaqAI TTAA 5 cut(s) 50, 174, 696, 1080, 1335
SatI GCNGC 4 cut(s) 73, 258, 986, 1274
Sau96I GGNCC 1 cut(s) 1315
ScaI AGTACT 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 1214
SfaNI GCATC 3 cut(s) 733, 923, 1392
SfcI CTRYAG 2 cut(s) 814, 918
SinI GGWCC 1 cut(s) 1315
SmiMI CAYNNNNRTG 1 cut(s) 400
SmlI CTYRAG 3 cut(s) 776, 949, 1391
SmoI CTYRAG 3 cut(s) 776, 949, 1391
SnaBI TACGTA 1 cut(s) 220
SpeI ACTAGT 2 cut(s) 251, 926
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 1 cut(s) 335
SspI AATATT 1 cut(s) 534
SspMI CTAG 4 cut(s) 252, 323, 374, 927
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 1212
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 3 cut(s) 222, 759, 1426
TaqI TCGA 3 cut(s) 381, 762, 858
TatI WGTACW 3 cut(s) 212, 245, 780
TfiI GAWTC 4 cut(s) 338, 408, 676, 1114
Tru1I TTAA 5 cut(s) 50, 174, 696, 1080, 1335
Tru9I TTAA 5 cut(s) 50, 174, 696, 1080, 1335
TscAI CASTG 4 cut(s) 279, 586, 1186, 1372
TseFI GTSAC 5 cut(s) 59, 227, 494, 575, 809
TseI GCWGC 4 cut(s) 72, 257, 985, 1273
Tsp45I GTSAC 5 cut(s) 59, 227, 494, 575, 809
TspDTI ATGAA 2 cut(s) 16, 950
TspGWI ACGGA 2 cut(s) 192, 1371
TspRI CASTG 4 cut(s) 279, 586, 1186, 1372
VpaK11BI GGWCC 1 cut(s) 1315
VspI ATTAAT 1 cut(s) 1335
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 4 cut(s) 350, 647, 828, 1218
XmiI GTMKAC 1 cut(s) 945
XmnI GAANNNNTTC 1 cut(s) 1051
XspI CTAG 4 cut(s) 252, 323, 374, 927
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.