zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g08570 |
| rosa_chinensis | RchiOBHm_Chr5g0009271 |
| rosa_laevigata | RLG00000031643 |
| rosa_multiflora | Rmu_sc0006233.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00066820 Rroxscaffold_1G00067520 |
| rosa_rugosa | Rorug04G0441700 |
| rosa_samantha | Rh5AG071800 Rh5BG068300 Rh5CG080700 Rh5DG068500 |
| rosa_wichuraiana | Rw5G006710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 383 |
| AccI | GTMKAC | 1 cut(s) | 759 |
| AciI | CCGC | 1 cut(s) | 149 |
| AclWI | GGATC | 7 cut(s) | 484, 559, 699, 950, 963, 1184, 1264 |
| AcsI | RAATTY | 4 cut(s) | 164, 461, 642, 1032 |
| AfaI | GTAC | 2 cut(s) | 569, 596 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 121, 226, 810, 1138 |
| AgeI | ACCGGT | 1 cut(s) | 1131 |
| AgsI | TTSAA | 7 cut(s) | 215, 226, 713, 857, 966, 1118, 1252 |
| AhlI | ACTAGT | 1 cut(s) | 740 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 776, 808 |
| AluBI | AGCT | 5 cut(s) | 136, 754, 774, 834, 1087 |
| AluI | AGCT | 5 cut(s) | 136, 754, 774, 834, 1087 |
| Alw26I | GTCTC | 2 cut(s) | 178, 1042 |
| AlwI | GGATC | 7 cut(s) | 484, 559, 699, 950, 963, 1184, 1264 |
| AoxI | GGCC | 1 cut(s) | 112 |
| ApeKI | GCWGC | 3 cut(s) | 72, 799, 1087 |
| ApoI | RAATTY | 4 cut(s) | 164, 461, 642, 1032 |
| AseI | ATTAAT | 1 cut(s) | 1149 |
| AsiGI | ACCGGT | 1 cut(s) | 1131 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 865 |
| AspS9I | GGNCC | 1 cut(s) | 1129 |
| AsuC2I | CCSGG | 1 cut(s) | 1028 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AvaII | GGWCC | 1 cut(s) | 1129 |
| BamHI | GGATCC | 1 cut(s) | 955 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 743, 775 |
| BauI | CACGAG | 1 cut(s) | 1091 |
| BbsI | GAAGAC | 1 cut(s) | 614 |
| BbvCI | CCTCAGC | 1 cut(s) | 1043 |
| BbvI | GCAGC | 3 cut(s) | 59, 811, 1074 |
| BccI | CCATC | 5 cut(s) | 32, 170, 299, 465, 1167 |
| BciVI | GTATCC | 1 cut(s) | 199 |
| BclI | TGATCA | 3 cut(s) | 322, 406, 874 |
| BcnI | CCSGG | 1 cut(s) | 1028 |
| BcoDI | GTCTC | 2 cut(s) | 178, 1042 |
| BcuI | ACTAGT | 1 cut(s) | 740 |
| BfaI | CTAG | 3 cut(s) | 137, 188, 741 |
| BfmI | CTRYAG | 2 cut(s) | 628, 732 |
| BfuI | GTATCC | 1 cut(s) | 199 |
| BglII | AGATCT | 1 cut(s) | 1186 |
| BisI | GCNGC | 3 cut(s) | 73, 800, 1088 |
| BlsI | GCNGC | 3 cut(s) | 74, 801, 1089 |
| Bme1390I | CCNGG | 1 cut(s) | 1028 |
| Bme18I | GGWCC | 1 cut(s) | 1129 |
| BmgT120I | GGNCC | 1 cut(s) | 1129 |
| BmiI | GGNNCC | 2 cut(s) | 497, 957 |
| BmrFI | CCNGG | 1 cut(s) | 1028 |
| BmsI | GCATC | 3 cut(s) | 547, 737, 1206 |
| BpiI | GAAGAC | 1 cut(s) | 614 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1043 |
| BpuEI | CTTGAG | 3 cut(s) | 611, 784, 1190 |
| BpuMI | CCSGG | 1 cut(s) | 1028 |
| Bsa29I | ATCGAT | 1 cut(s) | 576 |
| BsaBI | GATNNNNATC | 4 cut(s) | 321, 405, 408, 475 |
| BsaWI | WCCGGW | 1 cut(s) | 1131 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5, 35 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 121, 226, 810, 1138 |
| Bse118I | RCCGGY | 1 cut(s) | 1131 |
| Bse8I | GATNNNNATC | 4 cut(s) | 321, 405, 408, 475 |
| BseCI | ATCGAT | 1 cut(s) | 576 |
| BseGI | GGATG | 4 cut(s) | 88, 277, 476, 1178 |
| BseJI | GATNNNNATC | 4 cut(s) | 321, 405, 408, 475 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 121, 226, 810, 1138 |
| BseMII | CTCAG | 3 cut(s) | 626, 987, 1034 |
| BseRI | GAGGAG | 1 cut(s) | 1060 |
| BseXI | GCAGC | 3 cut(s) | 59, 811, 1074 |
| BsgI | GTGCAG | 1 cut(s) | 1073 |
| BshFI | GGCC | 1 cut(s) | 114 |
| BshTI | ACCGGT | 1 cut(s) | 1131 |
| BshVI | ATCGAT | 1 cut(s) | 576 |
| BsiSI | CCGG | 2 cut(s) | 1028, 1132 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 121, 226, 810, 1138 |
| BsmAI | GTCTC | 2 cut(s) | 178, 1042 |
| BsmI | GAATGC | 1 cut(s) | 221 |
| BsnI | GGCC | 1 cut(s) | 114 |
| BspACI | CCGC | 1 cut(s) | 149 |
| BspANI | GGCC | 1 cut(s) | 114 |
| BspCNI | CTCAG | 3 cut(s) | 627, 988, 1035 |
| BspDI | ATCGAT | 1 cut(s) | 576 |
| BspHI | TCATGA | 1 cut(s) | 1153 |
| BspLI | GGNNCC | 2 cut(s) | 497, 957 |
| BspPI | GGATC | 7 cut(s) | 484, 559, 699, 950, 963, 1184, 1264 |
| BsrFI | RCCGGY | 1 cut(s) | 1131 |
| BssAI | RCCGGY | 1 cut(s) | 1131 |
| BssSI | CACGAG | 1 cut(s) | 1091 |
| Bst2BI | CACGAG | 1 cut(s) | 1091 |
| Bst4CI | ACNGT | 2 cut(s) | 395, 508 |
| Bst6I | CTCTTC | 2 cut(s) | 369, 651 |
| BstC8I | GCNNGC | 2 cut(s) | 147, 1040 |
| BstDEI | CTNAG | 6 cut(s) | 635, 775, 906, 996, 1043, 1190 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 119 |
| BstF5I | GGATG | 4 cut(s) | 88, 277, 476, 1178 |
| BstMAI | GTCTC | 2 cut(s) | 178, 1042 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 30, 52, 142 |
| BstSCI | CCNGG | 1 cut(s) | 1026 |
| BstSFI | CTRYAG | 2 cut(s) | 628, 732 |
| BstV1I | GCAGC | 3 cut(s) | 59, 811, 1074 |
| BstV2I | GAAGAC | 1 cut(s) | 614 |
| BstX2I | RGATCY | 3 cut(s) | 551, 955, 1186 |
| BstYI | RGATCY | 3 cut(s) | 551, 955, 1186 |
| Bsu15I | ATCGAT | 1 cut(s) | 576 |
| BsuI | GTATCC | 1 cut(s) | 199 |
| BsuRI | GGCC | 1 cut(s) | 114 |
| BsuTUI | ATCGAT | 1 cut(s) | 576 |
| BtsCI | GGATG | 4 cut(s) | 88, 277, 476, 1178 |
| BtsIMutI | CAGTG | 3 cut(s) | 400, 993, 1186 |
| Cac8I | GCNNGC | 2 cut(s) | 147, 1040 |
| CciI | TCATGA | 1 cut(s) | 1153 |
| Cfr10I | RCCGGY | 1 cut(s) | 1131 |
| Cfr13I | GGNCC | 1 cut(s) | 1129 |
| ClaI | ATCGAT | 1 cut(s) | 576 |
| CseI | GACGC | 1 cut(s) | 1254 |
| Csp6I | GTAC | 2 cut(s) | 568, 595 |
| CspAI | ACCGGT | 1 cut(s) | 1131 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 22, 57 |
| CviAII | CATG | 3 cut(s) | 748, 1154, 1238 |
| CviQI | GTAC | 2 cut(s) | 568, 595 |
| DdeI | CTNAG | 6 cut(s) | 635, 775, 906, 996, 1043, 1190 |
| Eam1104I | CTCTTC | 2 cut(s) | 369, 651 |
| EarI | CTCTTC | 2 cut(s) | 369, 651 |
| Eco147I | AGGCCT | 1 cut(s) | 114 |
| Eco47I | GGWCC | 1 cut(s) | 1129 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 119 |
| EcoT22I | ATGCAT | 1 cut(s) | 730 |
| FaeI | CATG | 3 cut(s) | 751, 1157, 1241 |
| FatI | CATG | 3 cut(s) | 747, 1153, 1237 |
| FbaI | TGATCA | 3 cut(s) | 322, 406, 874 |
| FblI | GTMKAC | 1 cut(s) | 759 |
| Fnu4HI | GCNGC | 3 cut(s) | 73, 800, 1088 |
| FokI | GGATG | 4 cut(s) | 75, 284, 483, 1185 |
| Fsp4HI | GCNGC | 3 cut(s) | 73, 800, 1088 |
| FspBI | CTAG | 3 cut(s) | 137, 188, 741 |
| GluI | GCNGC | 3 cut(s) | 73, 800, 1088 |
| HaeIII | GGCC | 1 cut(s) | 114 |
| HapII | CCGG | 2 cut(s) | 1028, 1132 |
| HgaI | GACGC | 1 cut(s) | 1254 |
| Hin1II | CATG | 3 cut(s) | 751, 1157, 1241 |
| HindIII | AAGCTT | 2 cut(s) | 752, 832 |
| HinfI | GANTC | 4 cut(s) | 152, 222, 490, 928 |
| HpaII | CCGG | 2 cut(s) | 1028, 1132 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 3 cut(s) | 337, 597, 760 |
| Hpy188III | TCNNGA | 6 cut(s) | 542, 590, 689, 935, 1154, 1207 |
| Hpy8I | GTNNAC | 3 cut(s) | 337, 597, 760 |
| Hpy99I | CGWCG | 2 cut(s) | 317, 1248 |
| HpyAV | CCTTC | 8 cut(s) | 62, 94, 104, 355, 442, 762, 851, 1069 |
| HpyCH4III | ACNGT | 2 cut(s) | 395, 508 |
| HpyCH4IV | ACGT | 1 cut(s) | 570 |
| HpyCH4V | TGCA | 7 cut(s) | 33, 120, 557, 728, 1018, 1090, 1146 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 30, 52, 142 |
| HpyF3I | CTNAG | 6 cut(s) | 635, 775, 906, 996, 1043, 1190 |
| HpySE526I | ACGT | 1 cut(s) | 570 |
| Hsp92II | CATG | 3 cut(s) | 751, 1157, 1241 |
| Ksp22I | TGATCA | 3 cut(s) | 322, 406, 874 |
| LmnI | GCTCC | 3 cut(s) | 133, 771, 796 |
| LpnPI | CCDG | 8 cut(s) | 186, 674, 733, 920, 1041, 1052, 1145, 1287 |
| Lsp1109I | GCAGC | 3 cut(s) | 59, 811, 1074 |
| LweI | GCATC | 3 cut(s) | 547, 737, 1206 |
| MaeI | CTAG | 3 cut(s) | 137, 188, 741 |
| MaeII | ACGT | 1 cut(s) | 570 |
| MaeIII | GTNAC | 7 cut(s) | 59, 293, 308, 389, 623, 736, 743 |
| MboII | GAAGA | 9 cut(s) | 386, 619, 668, 725, 861, 923, 923, 1013, 1291 |
| MfeI | CAATTG | 1 cut(s) | 1056 |
| MflI | RGATCY | 3 cut(s) | 551, 955, 1186 |
| MmeI | TCCRAC | 2 cut(s) | 774, 1107 |
| Mph1103I | ATGCAT | 1 cut(s) | 730 |
| MroXI | GAANNNNTTC | 1 cut(s) | 865 |
| MseI | TTAA | 4 cut(s) | 50, 510, 894, 1149 |
| MslI | CAYNNNNRTG | 1 cut(s) | 214 |
| MspI | CCGG | 2 cut(s) | 1028, 1132 |
| MspR9I | CCNGG | 1 cut(s) | 1028 |
| MunI | CAATTG | 1 cut(s) | 1056 |
| Mva1269I | GAATGC | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 30, 52, 142 |
| NciI | CCSGG | 1 cut(s) | 1028 |
| NlaIII | CATG | 3 cut(s) | 751, 1157, 1241 |
| NlaIV | GGNNCC | 2 cut(s) | 497, 957 |
| NmeAIII | GCCGAG | 1 cut(s) | 1087 |
| NmuCI | GTSAC | 4 cut(s) | 59, 308, 389, 623 |
| NsiI | ATGCAT | 1 cut(s) | 730 |
| PagI | TCATGA | 1 cut(s) | 1153 |
| PceI | AGGCCT | 1 cut(s) | 114 |
| PctI | GAATGC | 1 cut(s) | 221 |
| PdmI | GAANNNNTTC | 1 cut(s) | 865 |
| PfeI | GAWTC | 4 cut(s) | 152, 222, 490, 928 |
| PinAI | ACCGGT | 1 cut(s) | 1131 |
| PkrI | GCNGC | 3 cut(s) | 74, 801, 1089 |
| PshBI | ATTAAT | 1 cut(s) | 1149 |
| PsiI | TTATAA | 1 cut(s) | 383 |
| PspN4I | GGNNCC | 2 cut(s) | 497, 957 |
| PspPI | GGNCC | 1 cut(s) | 1129 |
| PsuI | RGATCY | 3 cut(s) | 551, 955, 1186 |
| RsaI | GTAC | 2 cut(s) | 569, 596 |
| RsaNI | GTAC | 2 cut(s) | 568, 595 |
| RseI | CAYNNNNRTG | 1 cut(s) | 214 |
| SaqAI | TTAA | 4 cut(s) | 50, 510, 894, 1149 |
| SatI | GCNGC | 3 cut(s) | 73, 800, 1088 |
| Sau96I | GGNCC | 1 cut(s) | 1129 |
| ScrFI | CCNGG | 1 cut(s) | 1028 |
| SfaNI | GCATC | 3 cut(s) | 547, 737, 1206 |
| SfcI | CTRYAG | 2 cut(s) | 628, 732 |
| SinI | GGWCC | 1 cut(s) | 1129 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 214 |
| SmlI | CTYRAG | 3 cut(s) | 590, 763, 1205 |
| SmoI | CTYRAG | 3 cut(s) | 590, 763, 1205 |
| SpeI | ACTAGT | 1 cut(s) | 740 |
| SseBI | AGGCCT | 1 cut(s) | 114 |
| SsiI | CCGC | 1 cut(s) | 149 |
| SspI | AATATT | 1 cut(s) | 348 |
| SspMI | CTAG | 3 cut(s) | 137, 188, 741 |
| StuI | AGGCCT | 1 cut(s) | 114 |
| StyD4I | CCNGG | 1 cut(s) | 1026 |
| TaaI | ACNGT | 2 cut(s) | 395, 508 |
| TaiI | ACGT | 1 cut(s) | 573 |
| TaqI | TCGA | 3 cut(s) | 195, 576, 672 |
| TatI | WGTACW | 1 cut(s) | 594 |
| TfiI | GAWTC | 4 cut(s) | 152, 222, 490, 928 |
| Tru1I | TTAA | 4 cut(s) | 50, 510, 894, 1149 |
| Tru9I | TTAA | 4 cut(s) | 50, 510, 894, 1149 |
| TscAI | CASTG | 3 cut(s) | 400, 1000, 1186 |
| TseFI | GTSAC | 4 cut(s) | 59, 308, 389, 623 |
| TseI | GCWGC | 3 cut(s) | 72, 799, 1087 |
| Tsp45I | GTSAC | 4 cut(s) | 59, 308, 389, 623 |
| TspDTI | ATGAA | 3 cut(s) | 16, 764, 1254 |
| TspGWI | ACGGA | 1 cut(s) | 1185 |
| TspRI | CASTG | 3 cut(s) | 400, 1000, 1186 |
| VpaK11BI | GGWCC | 1 cut(s) | 1129 |
| VspI | ATTAAT | 1 cut(s) | 1149 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 119 |
| XapI | RAATTY | 4 cut(s) | 164, 461, 642, 1032 |
| XmiI | GTMKAC | 1 cut(s) | 759 |
| XmnI | GAANNNNTTC | 1 cut(s) | 865 |
| XspI | CTAG | 3 cut(s) | 137, 188, 741 |
| Zsp2I | ATGCAT | 1 cut(s) | 730 |