FvH4_3g08990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012963
Physical Location & Seq
Reverse (-)
5255599 .. 5257641
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08990.t1

Sequence Viewer

Length: 369 bp
ATGGCCAATAAACAATCACAAGGAGGAGGAGGAGAAAACATTTCATCTGCGCAAGCAGTGTTTCTCGGGGCTTTAGCTCCCGGTGTAAACGGTCCTACATGGAAAACTCTGAGGCTAGCTTTCGTGATGCTGGGTGTTTGCCTAGCTGTGATGCTGGGCTTGGCTTTCTCCTCTAGTGACTCTTGGTTGGTTCTTCATGTTGCATTCTTGGTCCTCATCACCACCACTCTCTTCCTGCTTCTTAGTTGGTTTCTTTCGCAGACTGGTTTGGTTTCTGTGGACCATCAAATCCGTGAGATAGGCTTAGCGCCAAATGATCAAGATACAAGCAGGAAAAACACCAAGAAGATAGAGGAGAAAGCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.07

Weight (kDa)

7.93

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28250
fragaria_vesca FvH4_3g08990 FvH4_3g08990
malus_domestica MD00G1116000.v1.1 MD10G1292600.v1.1
prunus_persica Prupe.4G049200_v2.0.a1
pyrus_communis pycom10g24470
rosa_chinensis RchiOBHm_Chr5g0008721
rosa_laevigata RLG00000031595
rosa_multiflora Rmu_sc0001665.1_g000042 Rmu_sc0042141.1_g000001
rosa_roxburghii Rroxscaffold_1G00067870
rosa_rugosa Rorug04G0438000
rosa_samantha Rh5AG066800 Rh5BG063900 Rh5CG074300 Rh5DG062300
rosa_wichuraiana Rw5G006210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 3
AluBI AGCT 3 cut(s) 77, 119, 146
AluI AGCT 3 cut(s) 77, 119, 146
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 2 cut(s) 52, 310
AspS9I GGNCC 3 cut(s) 92, 211, 280
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 211
AsuNHI GCTAGC 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 3 cut(s) 92, 211, 280
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 291
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 81
BfaI CTAG 3 cut(s) 116, 143, 174
BfoI RGCGCY 1 cut(s) 311
BlpI GCTNAGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 3 cut(s) 92, 211, 280
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 92, 211, 280
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 117, 141
BmtI GCTAGC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 5 cut(s) 39, 42, 45, 160, 368
BseYI CCCAGC 2 cut(s) 130, 154
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 81
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 1 cut(s) 316
Bsp1720I GCTNAGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 102
BspOI GCTAGC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 268
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 54, 117
BstDEI CTNAG 3 cut(s) 110, 242, 304
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 2 cut(s) 52, 310
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 79
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 54, 117
CfoI GCGC 2 cut(s) 52, 310
Cfr13I GGNCC 3 cut(s) 92, 211, 280
CviAII CATG 2 cut(s) 99, 197
DdeI CTNAG 3 cut(s) 110, 242, 304
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco47I GGWCC 3 cut(s) 92, 211, 280
Eco88I CYCGRG 1 cut(s) 65
FaeI CATG 2 cut(s) 102, 200
FaiI YATR 2 cut(s) 100, 198
FatI CATG 2 cut(s) 98, 196
FbaI TGATCA 1 cut(s) 316
FspBI CTAG 3 cut(s) 116, 143, 174
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 2 cut(s) 51, 309
GsaI CCCAGC 2 cut(s) 134, 158
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 81
HhaI GCGC 2 cut(s) 52, 310
Hin1II CATG 2 cut(s) 102, 200
Hin6I GCGC 2 cut(s) 50, 308
HinP1I GCGC 2 cut(s) 50, 308
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 88, 280
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 2 cut(s) 124, 320
Hpy8I GTNNAC 2 cut(s) 88, 280
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 110, 242, 304
Hsp92II CATG 2 cut(s) 102, 200
HspAI GCGC 2 cut(s) 50, 308
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 6 cut(s) 94, 116, 140, 248, 249, 316
LweI GCATC 2 cut(s) 117, 141
MaeI CTAG 3 cut(s) 116, 143, 174
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 3 cut(s) 185, 223, 358
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 7 cut(s) 17, 20, 23, 105, 181, 224, 346
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 367
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 81
NdeII GATC 1 cut(s) 316
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 2 cut(s) 102, 200
NmuCI GTSAC 1 cut(s) 176
NsbI TGCGCA 1 cut(s) 51
PctI GAATGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspFI CCCAGC 2 cut(s) 130, 154
PspPI GGNCC 3 cut(s) 92, 211, 280
SaqAI TTAA 1 cut(s) 367
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 3 cut(s) 92, 211, 280
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 81
SetI ASST 3 cut(s) 79, 121, 148
SfaNI GCATC 2 cut(s) 117, 141
SinI GGWCC 3 cut(s) 92, 211, 280
SspMI CTAG 3 cut(s) 116, 143, 174
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 92
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 33, 185
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 3 cut(s) 92, 211, 280
XspI CTAG 3 cut(s) 116, 143, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.