RchiOBHm_Chr5g0008721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012963
Physical Location & Seq
Forward (+)
5646134 .. 5648345
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28965

Sequence Viewer

Length: 363 bp
ATGGCCAATAAACAATCACAAGAAGGAGAAAATATTTCATCTGCACAAGCAGTCTTTCTCGGGGCTTTAGCGCCTGGTGTAAACGCTCCCACATGGACAACTCTGAGACTAGCGTTTGTGATGCTGGGTGTATGCCTTGCTGTGATGCTGGGCTTGGCTTTCTCCTCTAGTGACTCTTGGTTGGTTCTTCATGTTGCATTCTTGGTCCTCATCACTATGACTCTCTTCTTGCTTCTTAGCTGGTTTCTTTCGCAAACTGGTTTGGTTTCTGTGGAACATCAAATCCGTGAGATAGGCTTAGCGCCAACTGATCAAGATACAAGCAGAAAAAACAGCATGAAGATTGAGGAGAAAGCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.04

Weight (kDa)

5.53

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28250
fragaria_vesca FvH4_3g08990 FvH4_3g08990
malus_domestica MD00G1116000.v1.1 MD10G1292600.v1.1
prunus_persica Prupe.4G049200_v2.0.a1
pyrus_communis pycom10g24470
rosa_chinensis RchiOBHm_Chr5g0008721
rosa_laevigata RLG00000031595
rosa_multiflora Rmu_sc0001665.1_g000042 Rmu_sc0042141.1_g000001
rosa_roxburghii Rroxscaffold_1G00067870
rosa_rugosa Rorug04G0438000
rosa_samantha Rh5AG066800 Rh5BG063900 Rh5CG074300 Rh5DG062300
rosa_wichuraiana Rw5G006210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AjnI CCWGG 1 cut(s) 73
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 2 cut(s) 73, 304
AspS9I GGNCC 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 110, 168
BfoI RGCGCY 2 cut(s) 74, 305
BlpI GCTNAGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 111, 135
Bpu1102I GCTNAGC 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 2 cut(s) 154, 362
BseYI CCCAGC 2 cut(s) 124, 148
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 310
Bsp1720I GCTNAGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 262
BssMI GATC 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 230
BstDEI CTNAG 3 cut(s) 104, 236, 298
BstH2I RGCGCY 2 cut(s) 74, 305
BstHHI GCGC 2 cut(s) 73, 304
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 2 cut(s) 73, 304
Cfr13I GGNCC 1 cut(s) 205
CviAII CATG 3 cut(s) 93, 191, 337
CviJI RGCY 7 cut(s) 5, 65, 153, 158, 240, 297, 356
CviKI_1 RGCY 7 cut(s) 5, 65, 153, 158, 240, 297, 356
DdeI CTNAG 3 cut(s) 104, 236, 298
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 73
FaeI CATG 3 cut(s) 96, 194, 340
FaiI YATR 5 cut(s) 94, 133, 192, 218, 338
FatI CATG 3 cut(s) 92, 190, 336
FbaI TGATCA 1 cut(s) 310
FspBI CTAG 2 cut(s) 110, 168
GlaI GCGC 2 cut(s) 72, 303
GsaI CCCAGC 2 cut(s) 128, 152
HaeII RGCGCY 2 cut(s) 74, 305
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 73, 304
Hin1II CATG 3 cut(s) 96, 194, 340
Hin6I GCGC 2 cut(s) 71, 302
HinP1I GCGC 2 cut(s) 71, 302
HinfI GANTC 2 cut(s) 173, 220
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 44, 197
HpyF3I CTNAG 3 cut(s) 104, 236, 298
Hsp92II CATG 3 cut(s) 96, 194, 340
HspAI GCGC 2 cut(s) 71, 302
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 6 cut(s) 60, 87, 110, 134, 226, 243
LweI GCATC 2 cut(s) 111, 135
MaeI CTAG 2 cut(s) 110, 168
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 3 cut(s) 179, 217, 352
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 167, 214
MnlI CCTC 3 cut(s) 175, 218, 340
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 1 cut(s) 75
NdeII GATC 1 cut(s) 310
NlaIII CATG 3 cut(s) 96, 194, 340
NmuCI GTSAC 1 cut(s) 170
PctI GAATGC 1 cut(s) 197
PleI GAGTC 2 cut(s) 167, 214
PpsI GAGTC 2 cut(s) 167, 214
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 2 cut(s) 124, 148
PspGI CCWGG 1 cut(s) 73
PspPI GGNCC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 361
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 2 cut(s) 167, 214
ScrFI CCNGG 1 cut(s) 75
SetI ASST 1 cut(s) 242
SfaNI GCATC 2 cut(s) 111, 135
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 215
SspI AATATT 1 cut(s) 34
SspMI CTAG 2 cut(s) 110, 168
StyD4I CCNGG 1 cut(s) 73
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 27, 179, 353
TspGWI ACGGA 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 205
XspI CTAG 2 cut(s) 110, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.