MD00G1116000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0012963
Physical Location & Seq
Reverse (-)
24561676 .. 24564248
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1116000.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGCCAAAAAGCAACCAGAACCCGAACAAATTTCGTCGGCGAACGCAATCTTTCTCGGCGCTCTAGCTCCCGGCGTTAACGGTCCGACATGGACGACGCTGAGATTTGCGTTTGTGATGCTGGGTGTGTGCCTTGCTGTGATGCTGGGTTTGGCATTCTCTTCCAGTGACTCTTGGTTGGTGTTTCACGTTGCGTTCCTTGTACTCATCACTGCGACCCTCTTCCTGCTTCTTAGCTGGTTTCTTGCACAGACTGGTTTGGTTTCTGTTGAACATCAAATCCGTGAGATAGGCTTAGTGCCAAATGATCAAGAGGAGAGTAGAGAAGGCGTCGTGAAAAACGAGGAGAAATCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.99

Weight (kDa)

5.0

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28250
fragaria_vesca FvH4_3g08990 FvH4_3g08990
malus_domestica MD00G1116000.v1.1 MD10G1292600.v1.1
prunus_persica Prupe.4G049200_v2.0.a1
pyrus_communis pycom10g24470
rosa_chinensis RchiOBHm_Chr5g0008721
rosa_laevigata RLG00000031595
rosa_multiflora Rmu_sc0001665.1_g000042 Rmu_sc0042141.1_g000001
rosa_roxburghii Rroxscaffold_1G00067870
rosa_rugosa Rorug04G0438000
rosa_samantha Rh5AG066800 Rh5BG063900 Rh5CG074300 Rh5DG062300
rosa_wichuraiana Rw5G006210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 1 cut(s) 272
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 2 cut(s) 68, 237
AluI AGCT 2 cut(s) 68, 237
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 30
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 5
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 108, 132
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 165, 259
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 165, 259
BseRI GAGGAG 2 cut(s) 329, 359
BseYI CCCAGC 2 cut(s) 121, 145
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 72
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 307
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 165, 259
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 166, 227
BstACI GRCGYC 1 cut(s) 330
BstDEI CTNAG 3 cut(s) 101, 233, 295
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 70
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 172, 210
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 83
CpoI CGGWCCG 1 cut(s) 83
CseI GACGC 2 cut(s) 106, 319
Csp6I GTAC 1 cut(s) 203
CspI CGGWCCG 1 cut(s) 83
CviAII CATG 1 cut(s) 90
CviJI RGCY 4 cut(s) 5, 68, 237, 294
CviKI_1 RGCY 4 cut(s) 5, 68, 237, 294
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 3 cut(s) 101, 233, 295
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 166, 227
EarI CTCTTC 2 cut(s) 166, 227
Eco47I GGWCC 1 cut(s) 83
FaeI CATG 1 cut(s) 93
FaiI YATR 1 cut(s) 91
FatI CATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 307
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 61
GsaI CCCAGC 2 cut(s) 125, 149
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 72
HgaI GACGC 2 cut(s) 106, 319
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 1 cut(s) 93
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 1 cut(s) 170
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 311, 334
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 3 cut(s) 40, 100, 335
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 248
HpyF3I CTNAG 3 cut(s) 101, 233, 295
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 1 cut(s) 93
HspAI GCGC 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 30, 85, 107, 131, 178, 223, 239, 240
LweI GCATC 2 cut(s) 108, 132
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 153, 214
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 30
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 230, 307, 337
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 78, 358
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 72
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspFI CCCAGC 2 cut(s) 121, 145
PspPI GGNCC 1 cut(s) 83
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
Rsr2I CGGWCCG 1 cut(s) 83
RsrII CGGWCCG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 78, 358
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 72
SetI ASST 3 cut(s) 70, 192, 239
SfaNI GCATC 2 cut(s) 108, 132
SinI GGWCC 1 cut(s) 83
Sse9I AATT 1 cut(s) 30
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 192
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 2 cut(s) 78, 358
Tru9I TTAA 2 cut(s) 78, 358
TscAI CASTG 2 cut(s) 172, 217
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 172, 217
VpaK11BI GGWCC 1 cut(s) 83
XapI RAATTY 1 cut(s) 30
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.