Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0018814

Physical Location & Seq

Genomic Coordinates Reverse (-)

6341855 .. 6342902

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCTCTCAACTTCTGTTTCTAGCATTACTCCTAGCCATGACTTGCTCCATTGCTTTCGCAGCTGAGAGTCTGCAAGATTTCTGTGTACCGCAGCCAACACGCTTAGGTGCAGTGAATGGCATTGTCTGCAAGGACCCTAATCTTGTTGAAGCCAATGACTTCTTCTATAGTGGACTTGACATAGCAGGCAACACATCAACCGTATTTGGTTCACGTGTGACCTCTGTTAGGGTGAACCAAATTCCAGGACTCAACACCTTTGGCATCTCCATTGCACGCATCGATTTCGCTGCATGGGGTGTTAATCCTCCACACACTCATCCTAGAGCGACTGAAATCTTGACAGTCCTTGAAGGAAGCCTCCAAGTGGGTTTTGTCACCTCCAACCCCGAAAACAAACTCATTACAAAAATACTTCAGCCAGGTGATGTGTTTGTGTTCCCGGAAGGTCTTGTGCATTTCCAATATAATGTTGGATATACTATAGCAGTAGCCTATTCAGCTTTCAGCAGCCAAAATCCAGGAACTATTACCCTTGCCAACACAGTATTCGGAGCAAGGCCTCACATCTCTAGCGACATTCTTACAAAGGCTTTCTTAGTGGATAAGGAAGCAATCTACAACATACAGTCAAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

215

Amino Acids

23.1

Weight (kDa)

5.74

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	59 - 206	1.9e-48	Cupin
Cupin_2	PF07883	101 - 166	6.8e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018814)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10640
rosa_laevigata	RLG00000032276
rosa_multiflora	Rmu_co8267887.1_g000001 Rmu_sc0005319.1_g000007
rosa_rugosa	Rorug05G0034200
rosa_samantha	Rh5AG129300 Rh5BG127100 Rh5CG139900
rosa_wichuraiana	Rw5G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	231, 370
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	152, 356
AjnI	CCWGG	3 cut(s)	247, 424, 523
AjuI	GAANNNNNNNTTGG	4 cut(s)	149, 181, 536, 568
AluBI	AGCT	2 cut(s)	65, 506
AluI	AGCT	2 cut(s)	65, 506
AoxI	GGCC	2 cut(s)	3, 563
ApeKI	GCWGC	4 cut(s)	62, 94, 293, 513
ApoI	RAATTY	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	247, 373, 440
AvaII	GGWCC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	218
BbvI	GCAGC	4 cut(s)	74, 106, 280, 525
BcgI	CGANNNNNNTGC	4 cut(s)	271, 275, 305, 309
BciT130I	CCWGG	3 cut(s)	249, 426, 525
BcnI	CCSGG	1 cut(s)	446
BfaI	CTAG	4 cut(s)	23, 35, 327, 576
BfmI	CTRYAG	2 cut(s)	169, 486
BisI	GCNGC	4 cut(s)	63, 95, 294, 514
BlsI	GCNGC	4 cut(s)	64, 96, 295, 515
Bme1390I	CCNGG	4 cut(s)	249, 426, 446, 525
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	4 cut(s)	249, 426, 446, 525
BmsI	GCATC	2 cut(s)	276, 291
Bpu10I	CCTNAGC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 370
Bse3DI	GCAATG	2 cut(s)	51, 273
BseBI	CCWGG	3 cut(s)	249, 426, 525
BseCI	ATCGAT	1 cut(s)	285
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	231, 370
BseMI	GCAATG	2 cut(s)	51, 273
BseMII	CTCAG	1 cut(s)	57
BseXI	GCAGC	4 cut(s)	74, 106, 280, 525
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	5, 565
BshVI	ATCGAT	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	231, 370
BsnI	GGCC	2 cut(s)	5, 565
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	2 cut(s)	5, 565
BspCNI	CTCAG	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	51, 273
Bst2UI	CCWGG	3 cut(s)	249, 426, 525
Bst4CI	ACNGT	4 cut(s)	205, 349, 550, 633
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	190, 280
BstDEI	CTNAG	3 cut(s)	66, 106, 601
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 129, 503
BstNI	CCWGG	3 cut(s)	249, 426, 525
BstSCI	CCNGG	4 cut(s)	247, 424, 444, 523
BstSFI	CTRYAG	2 cut(s)	169, 486
BstV1I	GCAGC	4 cut(s)	74, 106, 280, 525
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	5, 565
BsuTUI	ATCGAT	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	190, 280
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	40, 297
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	3 cut(s)	66, 106, 601
Eco147I	AGGCCT	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	404
Eco72I	CACGTG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	3 cut(s)	247, 424, 523
FaeI	CATG	2 cut(s)	43, 300
FaiI	YATR	8 cut(s)	41, 171, 185, 298, 471, 483, 488, 629
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	2 cut(s)	39, 296
Fnu4HI	GCNGC	4 cut(s)	63, 95, 294, 514
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	4 cut(s)	63, 95, 294, 514
FspBI	CTAG	4 cut(s)	23, 35, 327, 576
GluI	GCNGC	4 cut(s)	63, 95, 294, 514
HaeIII	GGCC	2 cut(s)	5, 565
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	2 cut(s)	43, 300
HinfI	GANTC	2 cut(s)	70, 252
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	3 cut(s)	247, 373, 440
Hpy166II	GTNNAC	4 cut(s)	89, 176, 215, 238
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	2 cut(s)	343, 636
Hpy8I	GTNNAC	4 cut(s)	89, 176, 215, 238
HpyAV	CCTTC	2 cut(s)	350, 443
HpyCH4III	ACNGT	4 cut(s)	205, 349, 550, 633
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	6 cut(s)	76, 113, 132, 278, 296, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 129, 503
HpyF3I	CTNAG	3 cut(s)	66, 106, 601
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	43, 300
LmnI	GCTCC	2 cut(s)	53, 557
LpnPI	CCDG	8 cut(s)	174, 234, 261, 411, 438, 459, 510, 537
Lsp1109I	GCAGC	4 cut(s)	74, 106, 280, 525
LweI	GCATC	2 cut(s)	276, 291
MaeI	CTAG	4 cut(s)	23, 35, 327, 576
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	220, 379
MboII	GAAGA	1 cut(s)	157
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	79, 246
MmeI	TCCRAC	2 cut(s)	411, 457
MnlI	CCTC	6 cut(s)	16, 235, 321, 374, 394, 576
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	4 cut(s)	249, 426, 446, 525
MvaI	CCWGG	3 cut(s)	249, 426, 525
MwoI	GCNNNNNNNGC	3 cut(s)	62, 129, 503
NciI	CCSGG	1 cut(s)	446
NlaIII	CATG	2 cut(s)	43, 300
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	220, 379
PceI	AGGCCT	1 cut(s)	565
PfoI	TCCNGGA	3 cut(s)	247, 444, 523
PkrI	GCNGC	4 cut(s)	64, 96, 295, 515
PleI	GAGTC	2 cut(s)	78, 246
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
PpsI	GAGTC	2 cut(s)	78, 246
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	3 cut(s)	247, 424, 523
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	3 cut(s)	247, 424, 523
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	63, 95, 294, 514
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	79, 246
ScrFI	CCNGG	4 cut(s)	249, 426, 446, 525
SetI	ASST	9 cut(s)	67, 112, 220, 227, 263, 386, 430, 454, 508
SfaNI	GCATC	2 cut(s)	276, 291
SfcI	CTRYAG	2 cut(s)	169, 486
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	243
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	4 cut(s)	23, 35, 327, 576
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	4 cut(s)	247, 424, 444, 523
TaaI	ACNGT	4 cut(s)	205, 349, 550, 633
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	2 cut(s)	220, 379
TseI	GCWGC	4 cut(s)	62, 94, 293, 513
Tsp45I	GTSAC	2 cut(s)	220, 379
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XspI	CTAG	4 cut(s)	23, 35, 327, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.