FvH4_3g12190

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016286
Physical Location & Seq
Forward (+)
7215719 .. 7217305
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12190.t1

Sequence Viewer

Length: 321 bp
ATGAGTCACTACAACCAGCAGTACCAGGGTGCAGGAGTATATCCACCACCACCAACTTCATACCCTCCACGGCCAGCAGCCGGGGCATATCCTCCTCCAGGGCACGCTTATCCTCCACCACCAGTTCAAGGTCCTTATGTTGTTCCTCCACCAGTTTCATACCCCATGAAAACTGAGGGATACCCCCAAGGTCCCCAACAACCAGTCCCCTACCATCATCAAGACAAGGGCAAAGGCGGCGGATTTTGGGCCGGATGTTGCTCTGCCATGTTTTGCTGCTGCCTCTGCGATTTGTGCTGCTTGCCTTGTTCAATCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.34

Weight (kDa)

7.51

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 61 - 100 3.9e-08 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016286)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12190
malus_domestica MD05G1252900.v1.1 MD10G1234000.v1.1
prunus_persica Prupe.4G110700_v2.0.a1 Prupe.4G110900_v2.0.a1 Prupe.4G111000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0019971
rosa_laevigata RLG00000032490
rosa_roxburghii Rroxscaffold_1G00058220
rosa_rugosa Rorug05G0055900
rosa_samantha Rh5AG146000 Rh5BG145300 Rh5CG157000 Rh5DG144800
rosa_wichuraiana Rw5G012890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 237, 240
AcoI YGGCCR 1 cut(s) 71
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 3 cut(s) 80, 98, 128
AgsI TTSAA 2 cut(s) 128, 312
AjnI CCWGG 2 cut(s) 24, 97
AoxI GGCC 2 cut(s) 71, 249
ApeKI GCWGC 4 cut(s) 77, 276, 279, 297
AspS9I GGNCC 3 cut(s) 131, 191, 249
AsuC2I CCSGG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 131, 191
BaeGI GKGCMC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 89, 263, 266, 284
BccI CCATC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 2 cut(s) 26, 99
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 82
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 5 cut(s) 78, 238, 277, 280, 298
BlsI GCNGC 5 cut(s) 79, 239, 278, 281, 299
Bme1390I CCNGG 3 cut(s) 26, 82, 99
Bme18I GGWCC 2 cut(s) 131, 191
BmgT120I GGNCC 3 cut(s) 131, 191, 249
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 3 cut(s) 26, 82, 99
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 5 cut(s) 25, 68, 81, 98, 187
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 98, 128
Bse1I ACTGG 3 cut(s) 122, 152, 203
BseBI CCWGG 2 cut(s) 26, 99
BseDI CCNNGG 5 cut(s) 25, 68, 81, 98, 187
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 3 cut(s) 80, 98, 128
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 3 cut(s) 122, 152, 203
BseRI GAGGAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 4 cut(s) 89, 263, 266, 284
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 2 cut(s) 73, 251
BsiSI CCGG 2 cut(s) 81, 252
BslFI GGGAC 2 cut(s) 177, 191
BslI CCNNNNNNNGG 3 cut(s) 80, 98, 128
BsmFI GGGAC 2 cut(s) 177, 191
BsnI GGCC 2 cut(s) 73, 251
Bsp1286I GDGCHC 1 cut(s) 105
BspACI CCGC 2 cut(s) 237, 240
BspANI GGCC 2 cut(s) 73, 251
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 193
BsrI ACTGG 3 cut(s) 122, 152, 203
BssECI CCNNGG 5 cut(s) 25, 68, 81, 98, 187
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 26, 99
BstC8I GCNNGC 3 cut(s) 75, 105, 302
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 68
BstENI CCTNNNNNAGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 260
BstMWI GCNNNNNNNGC 4 cut(s) 83, 237, 285, 294
BstNI CCWGG 2 cut(s) 26, 99
BstSCI CCNGG 3 cut(s) 24, 80, 97
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 89, 263, 266, 284
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 73, 251
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 1 cut(s) 260
Cac8I GCNNGC 3 cut(s) 75, 105, 302
Cfr13I GGNCC 3 cut(s) 131, 191, 249
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 166, 268
CviJI RGCY 3 cut(s) 73, 80, 251
CviKI_1 RGCY 3 cut(s) 73, 80, 251
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 71
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 131, 191
EcoNI CCTNNNNNAGG 1 cut(s) 96
EcoO109I RGGNCCY 2 cut(s) 131, 191
EcoRII CCWGG 2 cut(s) 24, 97
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 169, 271
FaiI YATR 7 cut(s) 40, 61, 88, 138, 160, 167, 269
FaqI GGGAC 2 cut(s) 177, 191
FatI CATG 2 cut(s) 165, 267
Fnu4HI GCNGC 5 cut(s) 78, 238, 277, 280, 298
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 5 cut(s) 78, 238, 277, 280, 298
GluI GCNGC 5 cut(s) 78, 238, 277, 280, 298
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 73, 251
HapII CCGG 2 cut(s) 81, 252
Hin1II CATG 2 cut(s) 169, 271
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 81, 252
Hpy188III TCNNGA 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 237, 285, 294
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 169, 271
Lsp1109I GCAGC 4 cut(s) 89, 263, 266, 284
MaeIII GTNAC 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 105
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 7 cut(s) 75, 102, 105, 123, 156, 169, 293
MseI TTAA 1 cut(s) 319
MspI CCGG 2 cut(s) 81, 252
MspR9I CCNGG 3 cut(s) 26, 82, 99
MvaI CCWGG 2 cut(s) 26, 99
MwoI GCNNNNNNNGC 4 cut(s) 83, 237, 285, 294
NciI CCSGG 1 cut(s) 82
NlaIII CATG 2 cut(s) 169, 271
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 79, 239, 278, 281, 299
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 2 cut(s) 131, 191
Psp5II RGGWCCY 2 cut(s) 131, 191
Psp6I CCWGG 2 cut(s) 24, 97
PspGI CCWGG 2 cut(s) 24, 97
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 3 cut(s) 131, 191, 249
PspPPI RGGWCCY 2 cut(s) 131, 191
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 5 cut(s) 78, 238, 277, 280, 298
Sau96I GGNCC 3 cut(s) 131, 191, 249
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 26, 82, 99
SduI GDGCHC 1 cut(s) 105
SetI ASST 2 cut(s) 133, 193
SinI GGWCC 2 cut(s) 131, 191
SsiI CCGC 2 cut(s) 237, 240
StyD4I CCNGG 3 cut(s) 24, 80, 97
StyI CCWWGG 1 cut(s) 187
TauI GCSGC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 4 cut(s) 77, 276, 279, 297
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 48, 147, 182
VpaK11BI GGWCC 2 cut(s) 131, 191
XagI CCTNNNNNAGG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.