MD10G1234000.v1.1

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016286
Physical Location & Seq
Reverse (-)
33007120 .. 33008126
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1234000.v1.1.491

Sequence Viewer

Length: 486 bp
ATGAGTCACTACAACCATCAAAATCAGGCTCCAGCGGTATATCCACCACCCCCCATCTCATACCCTCCGCCGCCTGCCGGCGCATACCAAGGGTATCTGCCTCCGTCGTATCCGCCACCACCACAAATTCATCAAGGATACAATACTAGTACTCAAGGCGGTCCATATGTTGTTGTTGCACCACCAGTTGCTTACCCTATGAAAAATGATGGTCCTGGAGCTGGATACCCCCAACAGCCAGCTCCCTATCAGCAGCACCAACAGCCACCTCCCTATCAGCAGCAGCAACAGCCAGCTCCCTATCAGCAGCAGCAACAGCCACCTCCCTATCAGCAGCAGCAACAGTCACTTCCCTATCAGCAGCAGCAACAGCCACCAAAATCTCATCGCCATCACAGAGGTGGTGGATTTTGGGCCGGATGTTGTTCTGCCATGTTTTGCTGCTGTCTCTGCGATTTATGCTGCTTGCCCTGCTCAATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.9

Weight (kDa)

8.07

Isoelectric Point (pI)

88.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016286)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12190
malus_domestica MD05G1252900.v1.1 MD10G1234000.v1.1
prunus_persica Prupe.4G110700_v2.0.a1 Prupe.4G110900_v2.0.a1 Prupe.4G111000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0019971
rosa_laevigata RLG00000032490
rosa_roxburghii Rroxscaffold_1G00058220
rosa_rugosa Rorug05G0055900
rosa_samantha Rh5AG146000 Rh5BG145300 Rh5CG157000 Rh5DG144800
rosa_wichuraiana Rw5G012890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 35, 68, 71, 113, 159
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 77, 221
AhlI ACTAGT 1 cut(s) 146
AjnI CCWGG 1 cut(s) 214
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 3 cut(s) 221, 242, 296
AluI AGCT 3 cut(s) 221, 242, 296
Alw26I GTCTC 1 cut(s) 452
AoxI GGCC 1 cut(s) 414
ApoI RAATTY 1 cut(s) 126
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 3 cut(s) 161, 212, 414
AvaII GGWCC 2 cut(s) 161, 212
BccI CCATC 4 cut(s) 24, 62, 203, 399
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 3 cut(s) 120, 131, 218
BcoDI GTCTC 1 cut(s) 452
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 1 cut(s) 147
BfuI GTATCC 3 cut(s) 120, 131, 218
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 2 cut(s) 161, 212
BmgT120I GGNCC 3 cut(s) 161, 212, 414
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 216
BpmI CTGGAG 2 cut(s) 15, 237
BpuEI CTTGAG 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 221
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 77, 221
BseNI ACTGG 1 cut(s) 185
BshFI GGCC 1 cut(s) 416
BsiSI CCGG 2 cut(s) 78, 417
BslI CCNNNNNNNGG 2 cut(s) 77, 221
BsmAI GTCTC 1 cut(s) 452
BsnI GGCC 1 cut(s) 416
BspACI CCGC 5 cut(s) 35, 68, 71, 113, 159
BspANI GGCC 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 345
BstC8I GCNNGC 5 cut(s) 75, 79, 240, 294, 467
BstF5I GGATG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 83
BstMAI GTCTC 1 cut(s) 452
BstMWI GCNNNNNNNGC 7 cut(s) 262, 289, 316, 370, 450, 459, 471
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BsuI GTATCC 3 cut(s) 120, 131, 218
BsuRI GGCC 1 cut(s) 416
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 1 cut(s) 425
Cac8I GCNNGC 5 cut(s) 75, 79, 240, 294, 467
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 3 cut(s) 161, 212, 414
Csp6I GTAC 1 cut(s) 150
CviAII CATG 1 cut(s) 433
CviQI GTAC 1 cut(s) 150
EciI GGCGGA 2 cut(s) 57, 102
Eco130I CCWWGG 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 161, 212
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 436
FaiI YATR 8 cut(s) 40, 61, 85, 166, 168, 200, 434, 460
FatI CATG 1 cut(s) 432
FauNDI CATATG 1 cut(s) 166
FokI GGATG 1 cut(s) 432
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 82
GsuI CTGGAG 2 cut(s) 15, 237
HaeIII GGCC 1 cut(s) 416
HapII CCGG 2 cut(s) 78, 417
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 78, 417
Hpy99I CGWCG 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 7 cut(s) 262, 289, 316, 370, 450, 459, 471
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 1 cut(s) 81
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
LmnI GCTCC 4 cut(s) 34, 218, 247, 301
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 5, 345
MluCI AATT 1 cut(s) 126
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 5 cut(s) 75, 111, 279, 333, 392
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 1 cut(s) 484
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 78, 417
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 7 cut(s) 262, 289, 316, 370, 450, 459, 471
NaeI GCCGGC 1 cut(s) 79
NdeI CATATG 1 cut(s) 166
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 5, 345
OliI CACNNNNGTG 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 214
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 3 cut(s) 161, 212, 414
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 484
Sau96I GGNCC 3 cut(s) 161, 212, 414
ScaI AGTACT 1 cut(s) 151
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 216
SetI ASST 6 cut(s) 223, 244, 271, 298, 325, 403
SinI GGWCC 2 cut(s) 161, 212
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 1 cut(s) 126
SsiI CCGC 5 cut(s) 35, 68, 71, 113, 159
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 345
TasI AATT 1 cut(s) 126
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 484
Tru9I TTAA 1 cut(s) 484
TseFI GTSAC 2 cut(s) 5, 345
Tsp45I GTSAC 2 cut(s) 5, 345
TspDTI ATGAA 2 cut(s) 119, 215
TspGWI ACGGA 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 161, 212
XapI RAATTY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XspI CTAG 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.