Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017931

Physical Location & Seq

Genomic Coordinates Reverse (-)

7472433 .. 7473840

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTATTAAGCATGTCAGGATTCCATGCATTGGCCGGAATTCTGTACCGGACAACTTTTCAGTGAATAGTTTTGTATACGAGGTTATGCGATTCAAAGAGTATTACCCTGACAAGTATATCCTTGTGCATTGTACACATGGACACAATCGGACAGGGTTCATGATCATTCATTACTTGATGCGCACGCAACCAATGAAGACAGTCACTCAAGCAATACAAGATTTTGCTCAAGCTCGTCCTCCGGGAATATATATGCCTGACTACATTGATGCATTGTACTCATTCTATCATGAAATGAAGCCTGTGGAGTTCATTTGCCCGCGTACGCCTGAGTGGAAAAGATCTGAGTCTGTGCCGCACGACAAAGATCAAATCTTGAATCATAGTCATCAGGATAGGGGTACAGATGTAGTAATGACTAATGATGATATCTTGGGTGATAAGATACCTGATGAGCAGCAAGAGGAACTGCGACGGTTGTGCTACGAGCTTCTTAAGGCCTTTCCTAGTGTAAGAGGGAGATGGCAATTCCAAGGATCACATCCAGTTTCTCTTAACTGGGAGAATCTACAGTTGTTGAGGCAACAGTCCTACTATGCAACTTGGAAAGCTGATGGAACTCGTTATATGATGTTGATAACTAGCACCTGCCAGGCGCACAGAAGAAGCAGACCAGAAGATACCTTTGTTTATGATATGATGGCAATCAACAATGTTTCTGTGGTAGAGTGGCCTTTTCTGGAGCGGTCGAGGAAGATTGAGGAGCAAGTAATTCAGCCTCGTACTAATGACCAGCGCCGAGTTTATTACGAAAGTAGGAACAATGTTCCTGACTACAGATATGACTTGGAACCATACAAGGTGAGGATGAAGGGCTTTTGGCCACTCTCTAAGGTGAAGAAGATTTTGAAGGAGTTGATTCCAAAGCTTTCACATGATGCAGATGGTGTGATCTTTCAGGGTATGGATGATCGTTATGTTATAAGAAAACATGAACGCCTTCTGAAGTGGAAGTACCCTGAAATGAACTCGGTTGATTTTCTCTTTGAGGTAGGTAGTGATGGTCAGAAACTGCTTTATCTGTATGCATATGGAAAGAAGCAACTAATGAAAGGAGAAATGGTTGCATTTAGGGATAGTCCTGAACATTACTCGTTTTATTCGGGAAAAATAATCGAGTGTTTTCTGGACTCGGAGAAGAAAGAATGGGTCTACATGAGGAGCAGGACAGACAGTGGCGTAGCCAGAAACCATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

421

Amino Acids

50.12

Weight (kDa)

8.83

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	39 - 97	9.1e-09	Dual specificity phosphatase, catalytic domain
mRNA_cap_enzyme	PF01331	182 - 217	1.7e-12	mRNA capping enzyme, catalytic domain
mRNA_cap_enzyme	PF01331	230 - 339	8.8e-23	mRNA capping enzyme, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01290
fragaria_vesca	FvH4_3g12521
rosa_chinensis	RchiOBHm_Chr5g0020531
rosa_laevigata	RLG00000032536
rosa_multiflora	Rmu_sc0009745.1_g000011 Rmu_sc0010439.1_g000007
rosa_rugosa	Rorug05G0060300
rosa_samantha	Rh5BG150300 Rh5CG161700 Rh5DG149600
rosa_wichuraiana	Rw5G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	986
AarI	CACCTGC	1 cut(s)	659
Acc16I	TGCGCA	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	659
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	748
AccI	GTMKAC	2 cut(s)	78, 1215
AccII	CGCG	1 cut(s)	325
AciI	CCGC	3 cut(s)	323, 359, 748
AclWI	GGATC	1 cut(s)	547
AcoI	YGGCCR	2 cut(s)	34, 884
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	1028
AfaI	GTAC	7 cut(s)	48, 136, 281, 328, 406, 787, 1019
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	97, 382, 913
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	4 cut(s)	236, 493, 614, 931
AluI	AGCT	4 cut(s)	236, 493, 614, 931
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	1075
AoxI	GGCC	4 cut(s)	34, 501, 734, 884
ApeKI	GCWGC	1 cut(s)	460
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	1002
AspLEI	GCGC	3 cut(s)	186, 661, 801
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	452, 877, 910
BaeI	ACNNNNGTAYC	4 cut(s)	396, 429, 675, 708
BalI	TGGCCA	1 cut(s)	886
BarI	GAAGNNNNNNTAC	2 cut(s)	1001, 1033
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	5 cut(s)	519, 611, 697, 941, 1058
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BciT130I	CCWGG	1 cut(s)	656
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	2 cut(s)	510, 645
BfmI	CTRYAG	2 cut(s)	572, 838
BfoI	RGCGCY	1 cut(s)	802
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	659
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	2 cut(s)	359, 461
BlsI	GCNGC	2 cut(s)	360, 462
Bme1390I	CCNGG	2 cut(s)	246, 656
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	2 cut(s)	246, 656
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	3 cut(s)	171, 262, 931
BmuI	ACTGGG	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	764
BpuEI	CTTGAG	2 cut(s)	195, 216
BpuMI	CCSGG	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	535
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	1110, 1140
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	548, 566
Bse8I	GATNNNNATC	1 cut(s)	707
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	544, 876, 976
BseJI	GATNNNNATC	1 cut(s)	707
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	324, 339
BseNI	ACTGG	2 cut(s)	548, 566
BseRI	GAGGAG	2 cut(s)	779, 1237
BseXI	GCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	752
BshFI	GGCC	4 cut(s)	36, 503, 736, 886
BsiEI	CGRYCG	1 cut(s)	752
BsiSI	CCGG	3 cut(s)	37, 50, 245
BsiWI	CGTACG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	32
BsnI	GGCC	4 cut(s)	36, 503, 736, 886
Bsp1407I	TGTACA	1 cut(s)	134
Bsp143I	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
BspACI	CCGC	3 cut(s)	323, 359, 748
BspANI	GGCC	4 cut(s)	36, 503, 736, 886
BspCNI	CTCAG	2 cut(s)	325, 340
BspFNI	CGCG	1 cut(s)	325
BspHI	TCATGA	2 cut(s)	162, 292
BspLI	GGNNCC	1 cut(s)	855
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	748
BsrGI	TGTACA	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	548, 566
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
BssNAI	GTATAC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	535
Bst1107I	GTATAC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	5 cut(s)	205, 480, 576, 591, 1238
BstAFI	CTTAAG	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	188, 323
BstDEI	CTNAG	3 cut(s)	333, 348, 894
BstF5I	GGATG	3 cut(s)	544, 876, 976
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	3 cut(s)	186, 661, 801
BstKTI	GATC	6 cut(s)	168, 347, 373, 542, 957, 976
BstMBI	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
BstMCI	CGRYCG	1 cut(s)	752
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	244, 654
BstSFI	CTRYAG	2 cut(s)	572, 838
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BstZ17I	GTATAC	1 cut(s)	79
BsuRI	GGCC	4 cut(s)	36, 503, 736, 886
BtsCI	GGATG	3 cut(s)	544, 876, 976
BtsIMutI	CAGTG	2 cut(s)	69, 1243
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	2 cut(s)	188, 323
CaiI	CAGNNNCTG	1 cut(s)	1075
CciI	TCATGA	2 cut(s)	162, 292
CfoI	GCGC	3 cut(s)	186, 661, 801
Csp6I	GTAC	7 cut(s)	47, 135, 280, 327, 405, 786, 1018
CviAII	CATG	8 cut(s)	14, 27, 140, 163, 293, 938, 995, 1219
CviQI	GTAC	7 cut(s)	47, 135, 280, 327, 405, 786, 1018
DdeI	CTNAG	3 cut(s)	333, 348, 894
DpnI	GATC	6 cut(s)	167, 346, 372, 541, 956, 975
DpnII	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
EaeI	YGGCCR	2 cut(s)	34, 884
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	503
Eco32I	GATATC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	1028
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	654
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	535
EcoT22I	ATGCAT	3 cut(s)	32, 277, 1093
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	8 cut(s)	17, 30, 143, 166, 296, 941, 998, 1222
FatI	CATG	8 cut(s)	13, 26, 139, 162, 292, 937, 994, 1218
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	1093
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	2 cut(s)	78, 1215
Fnu4HI	GCNGC	2 cut(s)	359, 461
FokI	GGATG	3 cut(s)	531, 883, 983
Fsp4HI	GCNGC	2 cut(s)	359, 461
FspAI	RTGCGCAY	1 cut(s)	185
FspBI	CTAG	2 cut(s)	510, 645
FspI	TGCGCA	1 cut(s)	185
GlaI	GCGC	3 cut(s)	185, 660, 800
GluI	GCNGC	2 cut(s)	359, 461
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	36, 503, 736, 886
HapII	CCGG	3 cut(s)	37, 50, 245
HhaI	GCGC	3 cut(s)	186, 661, 801
Hin1II	CATG	8 cut(s)	17, 30, 143, 166, 296, 941, 998, 1222
Hin6I	GCGC	3 cut(s)	184, 659, 799
HinP1I	GCGC	3 cut(s)	184, 659, 799
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	7 cut(s)	22, 93, 350, 382, 568, 922, 1193
HpaII	CCGG	3 cut(s)	37, 50, 245
HphI	GGTGA	3 cut(s)	452, 877, 910
Hpy166II	GTNNAC	3 cut(s)	79, 137, 1216
Hpy188I	TCNGA	5 cut(s)	153, 349, 1008, 1071, 1198
Hpy8I	GTNNAC	3 cut(s)	79, 137, 1216
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	3 cut(s)	868, 907, 1013
HpyCH4III	ACNGT	5 cut(s)	205, 480, 576, 591, 1238
HpyCH4V	TGCA	7 cut(s)	30, 130, 275, 602, 944, 1091, 1130
HpyF3I	CTNAG	3 cut(s)	333, 348, 894
Hsp92II	CATG	8 cut(s)	17, 30, 143, 166, 296, 941, 998, 1222
HspAI	GCGC	3 cut(s)	184, 659, 799
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
LmnI	GCTCC	3 cut(s)	745, 766, 1224
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	3 cut(s)	171, 262, 931
MaeI	CTAG	2 cut(s)	510, 645
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	6 cut(s)	167, 346, 372, 541, 956, 975
MbiI	CCGCTC	1 cut(s)	748
MboI	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
MboII	GAAGA	7 cut(s)	211, 678, 692, 769, 913, 916, 1213
MflI	RGATCY	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	886
MluCI	AATT	3 cut(s)	40, 530, 774
MluNI	TGGCCA	1 cut(s)	886
MlyI	GAGTC	2 cut(s)	359, 1187
Mox20I	TGGCCA	1 cut(s)	886
Mph1103I	ATGCAT	3 cut(s)	32, 277, 1093
MroXI	GAANNNNTTC	1 cut(s)	1002
MscI	TGGCCA	1 cut(s)	886
MseI	TTAA	3 cut(s)	9, 498, 558
Msp20I	TGGCCA	1 cut(s)	886
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	3 cut(s)	37, 50, 245
MspR9I	CCNGG	2 cut(s)	246, 656
MvaI	CCWGG	1 cut(s)	656
MvnI	CGCG	1 cut(s)	325
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	1093
NdeII	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
NlaIII	CATG	8 cut(s)	17, 30, 143, 166, 296, 941, 998, 1222
NlaIV	GGNNCC	1 cut(s)	855
NmeAIII	GCCGAG	1 cut(s)	827
NmuCI	GTSAC	1 cut(s)	205
NsbI	TGCGCA	1 cut(s)	185
NsiI	ATGCAT	3 cut(s)	32, 277, 1093
NspI	RCATGY	1 cut(s)	17
PagI	TCATGA	2 cut(s)	162, 292
PaqCI	CACCTGC	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	5 cut(s)	22, 93, 382, 568, 922
Pfl23II	CGTACG	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	360, 462
PleI	GAGTC	2 cut(s)	358, 1187
PpsI	GAGTC	2 cut(s)	358, 1187
PsiI	TTATAA	1 cut(s)	986
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspLI	CGTACG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	855
PstNI	CAGNNNCTG	1 cut(s)	1075
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	7 cut(s)	48, 136, 281, 328, 406, 787, 1019
RsaNI	GTAC	7 cut(s)	47, 135, 280, 327, 405, 786, 1018
SaqAI	TTAA	3 cut(s)	9, 498, 558
SatI	GCNGC	2 cut(s)	359, 461
Sau3AI	GATC	6 cut(s)	165, 344, 370, 539, 954, 973
SchI	GAGTC	2 cut(s)	359, 1187
ScrFI	CCNGG	2 cut(s)	246, 656
SfaNI	GCATC	3 cut(s)	171, 262, 931
SfcI	CTRYAG	2 cut(s)	572, 838
SmlI	CTYRAG	3 cut(s)	210, 231, 497
SmoI	CTYRAG	3 cut(s)	210, 231, 497
Sse9I	AATT	3 cut(s)	40, 530, 774
SseBI	AGGCCT	1 cut(s)	503
SsiI	CCGC	3 cut(s)	323, 359, 748
SspMI	CTAG	2 cut(s)	510, 645
StuI	AGGCCT	1 cut(s)	503
StyD4I	CCNGG	2 cut(s)	244, 654
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	5 cut(s)	205, 480, 576, 591, 1238
TaqI	TCGA	2 cut(s)	752, 1179
TasI	AATT	3 cut(s)	40, 530, 774
TatI	WGTACW	2 cut(s)	134, 279
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	5 cut(s)	22, 93, 382, 568, 922
Tru1I	TTAA	3 cut(s)	9, 498, 558
Tru9I	TTAA	3 cut(s)	9, 498, 558
TscAI	CASTG	2 cut(s)	69, 1243
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	205
TspRI	CASTG	2 cut(s)	69, 1243
Van91I	CCANNNNNTGG	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	78, 1215
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	2 cut(s)	510, 645
Zsp2I	ATGCAT	3 cut(s)	32, 277, 1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.