Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017931

Physical Location & Seq

Genomic Coordinates Forward (+)

5256859 .. 5257802

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0060300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGATTAGTTGTGCTGCATATCGAGACTGGTGGCGTTTTGACCTTGAGGGCCTTCCTGCAGATCTCATTAGAAGGAATAGCAATACCAGACCCCGGTCAGGTCCATGGACTAAGACTACTGATCGAAGATTATCCTTACGCAACAGATGGGTTCCTCATATGAACTGCAAGCCTGGTACAAGGAATGGATCAATTCAGGCCATGCAGACCTTCGCCATATATGCTAGCTGGTGGCCAAAACTCTCTACTCCAGATGATCTTGCCTCCATTCTCACCACCATCATTTGGCTCTCATCAGCATACCACGCAGCATTGAACTATGGGCAGTATCCATATGGCAGATATGTCCCAGCCCGCCCACCACACATGCGGAGACTACTGCCACAAGAGCATGAACTAGAGTATGCTACTTTCATTAAGGATCCAGAGAAATATTTTCTATCGTCATTGCCAAATTTACTCGAAACAATCAAATATATGGCTGTGCTAGATATCATCTCAGCGCACTCCCCGGATGAGGAGTATATTGCGGAAAGAAAAGACTTGTCCACTTGGTCAGCTGACCCAGTTATCATTGAGGCATTCTACAGATTTTCTATGGATATGAGGAGGATTGAAAAGGAGATTGAACGAAGAAATGCCGATTCAAGACTGCGTAACAGATGTGGGGCAGGGATTCCACCATACGAGCTGCTCATGCCAAGCTCAGAATCTGGGGTTACAGCCAGAGGAGTGCCTAATAGTATATCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

252

Amino Acids

29.19

Weight (kDa)

8.92

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	1 - 28	5.8e-06	Lipoxygenase
Lipoxygenase	PF00305	77 - 235	5.3e-61	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01290
fragaria_vesca	FvH4_3g12521
rosa_chinensis	RchiOBHm_Chr5g0020531
rosa_laevigata	RLG00000032536
rosa_multiflora	Rmu_sc0009745.1_g000011 Rmu_sc0010439.1_g000007
rosa_rugosa	Rorug05G0060300
rosa_samantha	Rh5BG150300 Rh5CG161700 Rh5DG149600
rosa_wichuraiana	Rw5G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	288
AciI	CCGC	3 cut(s)	358, 373, 533
AclWI	GGATC	3 cut(s)	199, 419, 432
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	4 cut(s)	96, 101, 288, 520
AgsI	TTSAA	4 cut(s)	319, 620, 632, 651
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	4 cut(s)	231, 563, 694, 708
AluI	AGCT	4 cut(s)	231, 563, 694, 708
Alw26I	GTCTC	2 cut(s)	21, 370
AlwI	GGATC	3 cut(s)	199, 419, 432
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	3 cut(s)	52, 201, 236
ApeKI	GCWGC	3 cut(s)	17, 311, 694
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	52, 104
AsuC2I	CCSGG	2 cut(s)	97, 515
AsuHPI	GGTGA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	4, 323, 681
BccI	CCATC	2 cut(s)	144, 290
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	97, 515
BcoDI	GTCTC	2 cut(s)	21, 370
BfaI	CTAG	3 cut(s)	228, 401, 491
BfmI	CTRYAG	2 cut(s)	60, 589
BfuI	GTATCC	1 cut(s)	342
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	18, 312, 695
BlsI	GCNGC	3 cut(s)	19, 313, 696
Bme1390I	CCNGG	3 cut(s)	97, 177, 515
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	52, 104
BmiI	GGNNCC	2 cut(s)	156, 426
BmrFI	CCNGG	3 cut(s)	97, 177, 515
BmrI	ACTGGG	1 cut(s)	563
BmtI	GCTAGC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	563
BoxI	GACNNNNGTC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	97, 515
BsaJI	CCNNGG	3 cut(s)	95, 107, 513
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 101, 288, 520
Bse1I	ACTGG	2 cut(s)	35, 569
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	95, 107, 513
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	4 cut(s)	96, 101, 288, 520
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	2 cut(s)	516, 723
BseNI	ACTGG	2 cut(s)	35, 569
BseRI	GAGGAG	3 cut(s)	536, 625, 747
BseXI	GCAGC	3 cut(s)	4, 323, 681
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	3 cut(s)	54, 203, 238
BsiSI	CCGG	2 cut(s)	97, 515
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	4 cut(s)	96, 101, 288, 520
BsmAI	GTCTC	2 cut(s)	21, 370
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	3 cut(s)	54, 203, 238
Bsp143I	GATC	5 cut(s)	64, 124, 191, 259, 424
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	3 cut(s)	358, 373, 533
BspANI	GGCC	3 cut(s)	54, 203, 238
BspCNI	CTCAG	2 cut(s)	515, 722
BspLI	GGNNCC	2 cut(s)	156, 426
BspMAI	CTGCAG	1 cut(s)	64
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	199, 419, 432
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	35, 569
BssECI	CCNNGG	3 cut(s)	95, 107, 513
BssMI	GATC	5 cut(s)	64, 124, 191, 259, 424
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	173, 229, 358
BstDEI	CTNAG	3 cut(s)	114, 502, 709
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	5 cut(s)	67, 127, 194, 262, 427
BstMAI	GTCTC	2 cut(s)	21, 370
BstMBI	GATC	5 cut(s)	64, 124, 191, 259, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 308, 391, 700
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	373
BstPAI	GACNNNNGTC	1 cut(s)	97
BstSCI	CCNGG	3 cut(s)	95, 175, 513
BstSFI	CTRYAG	2 cut(s)	60, 589
BstV1I	GCAGC	3 cut(s)	4, 323, 681
BstX2I	RGATCY	2 cut(s)	64, 424
BstYI	RGATCY	2 cut(s)	64, 424
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	54, 203, 238
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	173, 229, 358
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	52, 104
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	5 cut(s)	108, 205, 370, 395, 700
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	3 cut(s)	114, 502, 709
DpnI	GATC	5 cut(s)	66, 126, 193, 261, 426
DpnII	GATC	5 cut(s)	64, 124, 191, 259, 424
EaeI	YGGCCR	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	5 cut(s)	111, 208, 373, 398, 703
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	5 cut(s)	107, 204, 369, 394, 699
FauI	CCCGC	1 cut(s)	365
FauNDI	CATATG	2 cut(s)	162, 337
Fnu4HI	GCNGC	3 cut(s)	18, 312, 695
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	3 cut(s)	18, 312, 695
FspBI	CTAG	3 cut(s)	228, 401, 491
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	3 cut(s)	18, 312, 695
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	54, 203, 238
HapII	CCGG	2 cut(s)	97, 515
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	5 cut(s)	111, 208, 373, 398, 703
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	3 cut(s)	647, 679, 713
HpaII	CCGG	2 cut(s)	97, 515
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	1 cut(s)	712
Hpy188III	TCNNGA	4 cut(s)	26, 254, 428, 651
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	3 cut(s)	65, 69, 223
HpyCH4V	TGCA	4 cut(s)	20, 62, 171, 208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 308, 391, 700
HpyF3I	CTNAG	3 cut(s)	114, 502, 709
Hsp92II	CATG	5 cut(s)	111, 208, 373, 398, 703
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	5 cut(s)	64, 124, 191, 259, 424
Lsp1109I	GCAGC	3 cut(s)	4, 323, 681
MaeI	CTAG	3 cut(s)	228, 401, 491
MaeIII	GTNAC	2 cut(s)	659, 721
MalI	GATC	5 cut(s)	66, 126, 193, 261, 426
MboI	GATC	5 cut(s)	64, 124, 191, 259, 424
MboII	GAAGA	2 cut(s)	141, 648
MflI	RGATCY	2 cut(s)	64, 424
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	3 cut(s)	195, 457, 753
MluNI	TGGCCA	1 cut(s)	238
MnlI	CCTC	8 cut(s)	43, 168, 277, 514, 574, 603, 606, 725
Mox20I	TGGCCA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	2 cut(s)	420, 757
Msp20I	TGGCCA	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	2 cut(s)	97, 515
MspR9I	CCNGG	3 cut(s)	97, 177, 515
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	224, 308, 391, 700
NciI	CCSGG	2 cut(s)	97, 515
NcoI	CCATGG	1 cut(s)	107
NdeI	CATATG	2 cut(s)	162, 337
NdeII	GATC	5 cut(s)	64, 124, 191, 259, 424
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	5 cut(s)	111, 208, 373, 398, 703
NlaIV	GGNNCC	2 cut(s)	156, 426
NspI	RCATGY	1 cut(s)	373
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	3 cut(s)	647, 679, 713
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	19, 313, 696
PshAI	GACNNNNGTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	156, 426
PspPI	GGNCC	2 cut(s)	52, 104
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	64, 424
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	420, 757
SatI	GCNGC	3 cut(s)	18, 312, 695
Sau3AI	GATC	5 cut(s)	64, 124, 191, 259, 424
Sau96I	GGNCC	2 cut(s)	52, 104
ScrFI	CCNGG	3 cut(s)	97, 177, 515
SetI	ASST	7 cut(s)	48, 106, 215, 233, 565, 696, 710
SfcI	CTRYAG	2 cut(s)	60, 589
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	195, 457, 753
SsiI	CCGC	3 cut(s)	358, 373, 533
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	3 cut(s)	228, 401, 491
StyD4I	CCNGG	3 cut(s)	95, 175, 513
StyI	CCWWGG	1 cut(s)	107
TaqI	TCGA	3 cut(s)	25, 127, 465
TasI	AATT	3 cut(s)	195, 457, 753
TfiI	GAWTC	3 cut(s)	647, 679, 713
Tru1I	TTAA	2 cut(s)	420, 757
Tru9I	TTAA	2 cut(s)	420, 757
TseI	GCWGC	3 cut(s)	17, 311, 694
TspDTI	ATGAA	3 cut(s)	179, 406, 411
Van91I	CCANNNNNTGG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	3 cut(s)	228, 401, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.