FvH4_3g15091

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0021039
Physical Location & Seq
Forward (+)
9355712 .. 9358037
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15091.t1

Sequence Viewer

Length: 720 bp
ATGGGGAGACTACATGACTTTGATACCAAGGTTGATATTGCGAGAGCAGATTACTGTTACGGCTACAACAGTGATGGAGGTTGCGAGAGATGGGAGCAGCCAAGTTGCAGACATGTTGGTGATAAGTATGTGCTAAAAACTGGTTACTTTCAAGCAGTATCCAGCTCCAGTTCCATATATACTAGTGATTCGAATACGAGTCTGGGATATAGTGATTGTGGGACTACTTGTTGGAACAACTGTGGCTGCCTTGGATTCAACTATCGGCTTAATAATATGACCGGATGCCAGTTTTGGAGTGGAAACTGGGAGTTCATTGAAGACCTCACTGATGATGACTCACGTGTTTTTCTTTATACAACAAAGTCGACTCCCAATATCAAAGTACATCAGTGGAGATGGATTGGCACTGGTATTGCGTTTGCTGAACTGGTCATGATGTTTTGCATTGTCTGCTATCTACGGAAAAGAAGAAAATTCTTAATTTCTGCTGAGAACAGGAGAAAGATTCAGAATGAGTTACTGAACCTAATGAAATCTAATAGACCTGCTGATATGAACGGAGTTCAAAATGATGGAAAGATGGAACAACATGACTTAAGTGTATTTAGCTATGCATCTCTAGTGACTGCCACGTGCAACTTCTCTGAGGAAAACAAGCTCGGAGAAGGGGGGTTTGGACCTGTTTATAAGGTAACGAAATTGGTTCTATATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

240

Amino Acids

27.3

Weight (kDa)

6.43

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021039)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15091
rosa_multiflora Rmu_sc0018668.1_g000001
rosa_samantha Rh5AG178000 Rh5BG177100 Rh5CG193600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 556
AccI GTMKAC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 476
AcvI CACGTG 2 cut(s) 344, 636
AfaI GTAC 1 cut(s) 387
AflII CTTAAG 1 cut(s) 598
AflIII ACRYGT 2 cut(s) 112, 343
AgsI TTSAA 4 cut(s) 152, 259, 320, 569
AhlI ACTAGT 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 3 cut(s) 165, 612, 661
AluI AGCT 3 cut(s) 165, 612, 661
ApeKI GCWGC 2 cut(s) 97, 246
ApoI RAATTY 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 680
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BbrPI CACGTG 2 cut(s) 344, 636
BbsI GAAGAC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 109, 233
BccI CCATC 5 cut(s) 68, 84, 393, 569, 577
BceAI ACGGC 1 cut(s) 76
BciVI GTATCC 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 2 cut(s) 183, 623
BfrI CTTAAG 1 cut(s) 598
BfuAI ACCTGC 1 cut(s) 556
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 2 cut(s) 98, 247
BlsI GCNGC 2 cut(s) 99, 248
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 680
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 275, 626
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 191
BsaAI YACGTR 2 cut(s) 344, 636
BsaJI CCNNGG 2 cut(s) 27, 250
BsaWI WCCGGW 1 cut(s) 281
Bse1I ACTGG 6 cut(s) 145, 168, 289, 311, 415, 435
BseDI CCNNGG 2 cut(s) 27, 250
BseGI GGATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 483, 639
BseNI ACTGG 6 cut(s) 145, 168, 289, 311, 415, 435
BseXI GCAGC 2 cut(s) 109, 233
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
Bsp119I TTCGAA 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 484, 640
BspHI TCATGA 1 cut(s) 435
BspMI ACCTGC 1 cut(s) 556
BspT104I TTCGAA 1 cut(s) 191
BspTI CTTAAG 1 cut(s) 598
BsrI ACTGG 6 cut(s) 145, 168, 289, 311, 415, 435
BssECI CCNNGG 2 cut(s) 27, 250
BssT1I CCWWGG 2 cut(s) 27, 250
Bst4CI ACNGT 3 cut(s) 56, 71, 242
BstAFI CTTAAG 1 cut(s) 598
BstAPI GCANNNNNTGC 1 cut(s) 453
BstBAI YACGTR 2 cut(s) 344, 636
BstBI TTCGAA 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 492, 648
BstF5I GGATG 1 cut(s) 290
BstMWI GCNNNNNNNGC 1 cut(s) 453
BstNSI RCATGY 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 109, 233
BstV2I GAAGAC 1 cut(s) 327
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 290
BtsIMutI CAGTG 4 cut(s) 76, 327, 398, 408
BveI ACCTGC 1 cut(s) 556
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 680
Csp6I GTAC 1 cut(s) 386
CviAII CATG 4 cut(s) 14, 113, 436, 593
CviJI RGCY 7 cut(s) 63, 100, 165, 246, 268, 612, 661
CviKI_1 RGCY 7 cut(s) 63, 100, 165, 246, 268, 612, 661
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 2 cut(s) 492, 648
Eco130I CCWWGG 2 cut(s) 27, 250
Eco47I GGWCC 1 cut(s) 680
Eco72I CACGTG 2 cut(s) 344, 636
EcoT14I CCWWGG 2 cut(s) 27, 250
EcoT22I ATGCAT 1 cut(s) 619
ErhI CCWWGG 2 cut(s) 27, 250
FaeI CATG 4 cut(s) 17, 116, 439, 596
FaqI GGGAC 1 cut(s) 235
FatI CATG 4 cut(s) 13, 112, 435, 592
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 98, 247
FokI GGATG 1 cut(s) 297
Fsp4HI GCNGC 2 cut(s) 98, 247
FspBI CTAG 2 cut(s) 183, 623
GluI GCNGC 2 cut(s) 98, 247
GsuI CTGGAG 1 cut(s) 151
HapII CCGG 1 cut(s) 282
Hin1II CATG 4 cut(s) 17, 116, 439, 596
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 6 cut(s) 188, 199, 255, 338, 370, 508
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 3 cut(s) 513, 649, 665
Hpy188III TCNNGA 1 cut(s) 436
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 3 cut(s) 56, 71, 242
HpyCH4IV ACGT 2 cut(s) 343, 635
HpyCH4V TGCA 4 cut(s) 108, 447, 617, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 453
HpyF3I CTNAG 2 cut(s) 492, 648
HpySE526I ACGT 2 cut(s) 343, 635
Hsp92II CATG 4 cut(s) 17, 116, 439, 596
LmnI GCTCC 2 cut(s) 94, 170
Lsp1109I GCAGC 2 cut(s) 109, 233
LweI GCATC 2 cut(s) 275, 626
MaeI CTAG 2 cut(s) 183, 623
MaeII ACGT 2 cut(s) 343, 635
MaeIII GTNAC 5 cut(s) 56, 143, 519, 625, 694
MboII GAAGA 2 cut(s) 332, 483
MluCI AATT 3 cut(s) 476, 483, 701
MlyI GAGTC 3 cut(s) 208, 332, 364
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 3 cut(s) 71, 335, 643
Mph1103I ATGCAT 1 cut(s) 619
MseI TTAA 3 cut(s) 270, 482, 599
MslI CAYNNNNRTG 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 598
MspI CCGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 453
NlaIII CATG 4 cut(s) 17, 116, 439, 596
NmuCI GTSAC 1 cut(s) 625
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 1 cut(s) 116
NspV TTCGAA 1 cut(s) 191
PagI TCATGA 1 cut(s) 435
PciI ACATGT 1 cut(s) 112
PfeI GAWTC 3 cut(s) 188, 255, 508
PkrI GCNGC 2 cut(s) 99, 248
PleI GAGTC 3 cut(s) 207, 332, 364
PmaCI CACGTG 2 cut(s) 344, 636
PmlI CACGTG 2 cut(s) 344, 636
PpsI GAGTC 3 cut(s) 207, 332, 364
Ppu21I YACGTR 2 cut(s) 344, 636
PscI ACATGT 1 cut(s) 112
PsiI TTATAA 1 cut(s) 690
PspCI CACGTG 2 cut(s) 344, 636
PspPI GGNCC 1 cut(s) 680
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 117
SalI GTCGAC 1 cut(s) 367
SaqAI TTAA 3 cut(s) 270, 482, 599
SatI GCNGC 2 cut(s) 98, 247
Sau96I GGNCC 1 cut(s) 680
SchI GAGTC 3 cut(s) 208, 332, 364
SfaNI GCATC 2 cut(s) 275, 626
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 3 cut(s) 476, 483, 701
SspMI CTAG 2 cut(s) 183, 623
StyI CCWWGG 2 cut(s) 27, 250
TaaI ACNGT 3 cut(s) 56, 71, 242
TaiI ACGT 2 cut(s) 346, 638
TaqI TCGA 2 cut(s) 191, 368
TasI AATT 3 cut(s) 476, 483, 701
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 3 cut(s) 188, 255, 508
Tru1I TTAA 3 cut(s) 270, 482, 599
Tru9I TTAA 3 cut(s) 270, 482, 599
TscAI CASTG 4 cut(s) 76, 334, 398, 415
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 2 cut(s) 97, 246
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 304, 548, 572
TspGWI ACGGA 2 cut(s) 478, 576
TspRI CASTG 4 cut(s) 76, 334, 398, 415
Vha464I CTTAAG 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 2 cut(s) 183, 623
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.