Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0021039

Physical Location & Seq

Genomic Coordinates Forward (+)

19258175 .. 19258696

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG193600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGGTACAAGTACAACTATACCATTGTTTCAAATGAGAATGAAGATTACTTTACTTATACTGCAGTAGATGATCAAAGTGATGGATCCCAATGGGTGATGAATGTACTGGGGCGGCTACGTGACTTTGATATAAACATTGATATTGTGCGAGCAGATTACTGTTATGGCCATTACAACGATGGAGGGTGTGAGAGATGGGAGCAGCCTGGTTGCAGACATGTTGGTGATCAATTTGAGCTACAACAAGGTTATTTTCAAGCAATTACCAGCTCTGCTTCATGTACGAGTAATTCAAATACGAGTCAGGGATATAGTGATTGTAAAGCAACTTGTTGGAACTATTGTGGCTGCCTTGGTTTCAACTATCAGTTTAGTAATCAGACTGGATGCCAGTTTTGGACTGGAAACTGGAAGTACATTGAAGACCTCACTGATGATGATTCAAGGATATTTCTTTATAGGACAAAATACTGTTTACTCATTTATAGGGAGTCGACGTTTCAGTCCCTGACCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

173

Amino Acids

20.3

Weight (kDa)

4.52

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15091
rosa_multiflora	Rmu_sc0018668.1_g000001
rosa_samantha	Rh5AG178000 Rh5BG177100 Rh5CG193600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	497
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	2 cut(s)	81, 94
AcoI	YGGCCR	1 cut(s)	169
AfaI	GTAC	5 cut(s)	8, 14, 108, 286, 419
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	6 cut(s)	33, 260, 297, 364, 425, 447
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	241, 273
AluI	AGCT	2 cut(s)	241, 273
AlwI	GGATC	2 cut(s)	81, 94
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	205, 351
AsuHPI	GGTGA	2 cut(s)	109, 239
BalI	TGGCCA	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	217, 338
BccI	CCATC	3 cut(s)	77, 176, 192
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	2 cut(s)	73, 229
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	3 cut(s)	116, 206, 352
BlsI	GCNGC	3 cut(s)	117, 207, 353
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bse1I	ACTGG	5 cut(s)	114, 391, 394, 409, 416
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	395
BseNI	ACTGG	5 cut(s)	114, 391, 394, 409, 416
BseXI	GCAGC	2 cut(s)	217, 338
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	73, 86, 229
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	2 cut(s)	81, 94
BsrI	ACTGG	5 cut(s)	114, 391, 394, 409, 416
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	73, 86, 229
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	164, 476
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	76, 89, 232
BstMBI	GATC	3 cut(s)	73, 86, 229
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	217, 338
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	511
Csp6I	GTAC	5 cut(s)	7, 13, 107, 285, 418
CviAII	CATG	2 cut(s)	221, 282
CviJI	RGCY	6 cut(s)	118, 171, 208, 241, 273, 351
CviKI_1	RGCY	6 cut(s)	118, 171, 208, 241, 273, 351
CviQI	GTAC	5 cut(s)	7, 13, 107, 285, 418
DpnI	GATC	3 cut(s)	75, 88, 231
DpnII	GATC	3 cut(s)	73, 86, 229
DrdI	GACNNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	224, 285
FaiI	YATR	9 cut(s)	21, 60, 134, 168, 222, 283, 315, 462, 489
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	2 cut(s)	220, 281
FbaI	TGATCA	2 cut(s)	73, 229
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	3 cut(s)	116, 206, 352
FokI	GGATG	1 cut(s)	402
Fsp4HI	GCNGC	3 cut(s)	116, 206, 352
GluI	GCNGC	3 cut(s)	116, 206, 352
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	224, 285
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	3 cut(s)	304, 443, 494
HphI	GGTGA	2 cut(s)	109, 239
Hpy166II	GTNNAC	2 cut(s)	479, 498
Hpy188I	TCNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	479, 498
Hpy99I	CGWCG	1 cut(s)	502
HpyCH4III	ACNGT	2 cut(s)	164, 476
HpyCH4IV	ACGT	2 cut(s)	121, 500
HpyCH4V	TGCA	2 cut(s)	65, 216
HpySE526I	ACGT	2 cut(s)	121, 500
Hsp92II	CATG	2 cut(s)	224, 285
Ksp22I	TGATCA	2 cut(s)	73, 229
Kzo9I	GATC	3 cut(s)	73, 86, 229
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	9 cut(s)	95, 195, 222, 283, 293, 372, 390, 397, 407
Lsp1109I	GCAGC	2 cut(s)	217, 338
LweI	GCATC	1 cut(s)	380
MaeII	ACGT	2 cut(s)	121, 500
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	75, 88, 231
MboI	GATC	3 cut(s)	73, 86, 229
MboII	GAAGA	2 cut(s)	56, 437
MflI	RGATCY	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	3 cut(s)	233, 264, 292
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	313, 503
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	2 cut(s)	179, 440
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	520
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	73, 86, 229
NlaIII	CATG	2 cut(s)	224, 285
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	224
PciI	ACATGT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	3 cut(s)	117, 207, 353
PleI	GAGTC	2 cut(s)	312, 502
PpsI	GAGTC	2 cut(s)	312, 502
Ppu21I	YACGTR	1 cut(s)	122
PscI	ACATGT	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	5 cut(s)	8, 14, 108, 286, 419
RsaNI	GTAC	5 cut(s)	7, 13, 107, 285, 418
RseI	CAYNNNNRTG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	3 cut(s)	116, 206, 352
Sau3AI	GATC	3 cut(s)	73, 86, 229
SchI	GAGTC	2 cut(s)	313, 503
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	8 cut(s)	8, 124, 243, 253, 275, 432, 503, 518
SfaNI	GCATC	1 cut(s)	380
SfcI	CTRYAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	233, 264, 292
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	164, 476
TaiI	ACGT	2 cut(s)	124, 503
TaqI	TCGA	1 cut(s)	497
TasI	AATT	3 cut(s)	233, 264, 292
TatI	WGTACW	3 cut(s)	12, 106, 417
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	2 cut(s)	205, 351
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	3 cut(s)	57, 116, 270
TspRI	CASTG	1 cut(s)	439
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	2 cut(s)	179, 401
XmiI	GTMKAC	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.