Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0021039

Physical Location & Seq

Genomic Coordinates Forward (+)

19973239 .. 19977475

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGAATGAAGATTACTTATACTGCAGTAGATGATCGAAGTCATGGATCCCAATGGGTGCTGAATGTACTGGGGCGGCTACGTGACTTTGATATATACGTTGATATTGCGCGAGCAGATTACTGTTATGGCTATAACAATGATGGAGGGTGTGAGAGATGGGAGCAGCCTGGTTGCAGACATGTTGATGATCAATTTGAAATACAACAAGGTTACTTTCAAGCAATTACCAGCTCTGCTTCAACATTTACGAGTAATTCAAATTCGAGTCAGGGATATAGTGATTGTAAAGCAACTTGTTGGAACTATTGTGGCTGCCTTGGTTTCAACTGTCGGTTTAGTAATCAGACTGGATGCCGGTTTTGGACTGGAAACTGGACGTTCATTGAAGGCCTCACTGATGATGATTCAAGGATATTTGTTTATACAACAAAGCCAACTCCTACTATTAACGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

153

Amino Acids

17.49

Weight (kDa)

5.01

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15091
rosa_multiflora	Rmu_sc0018668.1_g000001
rosa_samantha	Rh5AG178000 Rh5BG177100 Rh5CG193600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	112
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	2 cut(s)	42, 55
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	7 cut(s)	200, 221, 243, 261, 328, 389, 411
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
AlwI	GGATC	2 cut(s)	42, 55
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	166, 315
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	178, 302
BccI	CCATC	2 cut(s)	137, 153
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	3 cut(s)	77, 167, 316
BlsI	GCNGC	3 cut(s)	78, 168, 317
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	4 cut(s)	75, 355, 373, 380
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	359
BseNI	ACTGG	4 cut(s)	75, 355, 373, 380
BseXI	GCAGC	2 cut(s)	178, 302
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	358
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	34, 47, 190
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	42, 55
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	4 cut(s)	75, 355, 373, 380
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	34, 47, 190
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	125, 332
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	37, 50, 193
BstMBI	GATC	3 cut(s)	34, 47, 190
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	178, 302
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	2 cut(s)	44, 182
CviJI	RGCY	7 cut(s)	79, 132, 169, 234, 315, 393, 436
CviKI_1	RGCY	7 cut(s)	79, 132, 169, 234, 315, 393, 436
CviQI	GTAC	1 cut(s)	68
DpnI	GATC	3 cut(s)	36, 49, 192
DpnII	GATC	3 cut(s)	34, 47, 190
Eco130I	CCWWGG	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	47, 185
FaiI	YATR	9 cut(s)	21, 45, 95, 97, 129, 135, 183, 279, 426
FatI	CATG	2 cut(s)	43, 181
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	77, 167, 316
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	77, 167, 316
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	77, 167, 316
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	47, 185
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	268, 407
HpaII	CCGG	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	348
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	125, 332
HpyCH4IV	ACGT	3 cut(s)	82, 99, 380
HpyCH4V	TGCA	2 cut(s)	26, 177
HpySE526I	ACGT	3 cut(s)	82, 99, 380
Hsp92II	CATG	2 cut(s)	47, 185
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	34, 47, 190
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	9 cut(s)	56, 156, 183, 244, 257, 336, 354, 361, 371
Lsp1109I	GCAGC	2 cut(s)	178, 302
LweI	GCATC	1 cut(s)	344
MaeII	ACGT	3 cut(s)	82, 99, 380
MaeIII	GTNAC	2 cut(s)	83, 212
MalI	GATC	3 cut(s)	36, 49, 192
MboI	GATC	3 cut(s)	34, 47, 190
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	5 cut(s)	194, 225, 256, 262, 457
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	2 cut(s)	140, 404
MseI	TTAA	2 cut(s)	450, 460
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	112
NdeII	GATC	3 cut(s)	34, 47, 190
NlaIII	CATG	2 cut(s)	47, 185
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	393
PciI	ACATGT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	78, 168, 317
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	83
PscI	ACATGT	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	450, 460
SatI	GCNGC	3 cut(s)	77, 167, 316
Sau3AI	GATC	3 cut(s)	34, 47, 190
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	5 cut(s)	85, 102, 214, 236, 383
SfaNI	GCATC	1 cut(s)	344
SfcI	CTRYAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	5 cut(s)	194, 225, 256, 262, 457
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	125, 332
TaiI	ACGT	3 cut(s)	85, 102, 383
TaqI	TCGA	2 cut(s)	37, 266
TasI	AATT	5 cut(s)	194, 225, 256, 262, 457
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	450, 460
Tru9I	TTAA	2 cut(s)	450, 460
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	166, 315
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	23, 373
TspRI	CASTG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.