Rh5BG177100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
19065626 .. 19116045
50420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG177100.1

Sequence Viewer

Length: 1722 bp
ATGGATTCCGATGCGGCGGCGGCTAGGCAGGGAAGTGGTAAGGATGAGTCGTCCGTATACCAACATGGAGAGGTTGGGAAAAGGAAGATGAAGATGCTTGTTGAACCCATAATATTCAAATTCAATACTTCTCCTGCCGCAAGCAGAGATACACTGAAACCATGCCATACATTCAATTATACCATTACCAATAATACCAGTGTTGTTGCTACCCTTTTGGATTCTGGCAATTTCATCCTACAACAAGTGAACTCCGACGCATCAACAAAGAGGGTGTTGGGGCAAAGTTTTGATCATCCTGGAAACACCCTTTTGCCAGAACCGGGGGCTTTCACTCTAGATTGGGACCCCGGTGAACACCAGTTGAAGATCAGGCAGCGCGGGAAGGTTTGTTGGAGTAGCGGTGTCTTTACCAATGGAAGATTCAAGTTTGTACTACCTGATGATGATTCCAAGAAGATGAGGTACAACTTTACCATTGTTTCAAATGGTAAAGATGAGAATGAAGATTACTTTACTTATACTGCAGTAGATGATCAAAGTGATGGATCCCAATGGGTGCTGAATGTACTGGGGCGGCTTCGTGACTTTGATATAAATGTTGATATTGCGCGAGCAGATTACTGTTATGGCTATAACAGTGATGGAGGGTGTGAGAGATGGGAGCAGCCTGGTTGTAGACATGTTGGTGATCGATTTGAGCTACAACAAGGTTACTTTCAAGCAATTACCAGCTCTGCTTCAACATTTACGAGTAATTCAAATACGAGTCAGGGATATAGTGATTGTAAAGCAACTTGTTGGAACTATTGTGGCTGCCTTGGTTTCAACTATCGGTTTAGTAATCAGACTGGATGCCAGTTTTGGACTGGAAACTGGAAGTTCATTGAAGACCTCACTGATGATGATTCAAGGATATTTGTTTATACAACAAAGCCAACTCCTACTATTAACGGTGAGAACAGGAAAAAGATTCAGAATGAGTTGCTGAACTTAATGACATCTAATCGACCTACTGATGTGAATGTGGTTCAAAATGATGGAAAGATGTCATACCCTCCAAACCTTCCAAGTTCCAAAGGCGGCAGCAAATGCAAATCTCCAGCAGATCTCTCATGCCCATCCTTTTCTGAGTTTCCTCTTTCAAATTTCACCGCGCATAAGCATAAGGATTCTCCAACTCTCAGTGAGCAACGTGATTTCACATGGTTAAGATGGGTGTCCCTCCGTTTCAAGTTATTCTTCACTCTGCGAAACCCTAGTTCCCAATTCACCCCACGGAGCTCAAATTCCCCTGTGTTGGCGTCAAGTAAGGCCTCAAGTGATGACAATAGCGGAAGAATGAAGAGAAGAAAACTCAGAGAAATGTTTCCTGCCAACAAAGGCAAGACCAATGAATCAATTCATGTTAGTACCGGATTCCACATTAGTGTGTTTGAAGGTATTGTTGGTGAGGTAATACATGTTGTGACAACAATGTGGCCAAACACCATGCATAAGGTTGCTGAAAATGTTATACAACCCATAGAGGAGAATGGTGAGCACAATTTGGTGGCTGACATTCGCAAGGAGTCACGAAAGAGAAAATTTTGTCTCAGCCATCCAATTTGGAATTTTAGTCTCAGCCCTCCATTATCATTGGACAGCCGTGCAAAACACCGAATATGTGAGGAAATCCCTGCAAATGAGATAGCACAAGATGGAAAAGGCCATTATCACTAG

Protein Analysis

573

Amino Acids

64.67

Weight (kDa)

8.1

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 60 - 107 1.8e-08 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021039)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15091
rosa_multiflora Rmu_sc0018668.1_g000001
rosa_samantha Rh5AG178000 Rh5BG177100 Rh5CG193600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 57, 679
AccII CGCG 3 cut(s) 381, 613, 1157
AclWI GGATC 2 cut(s) 543, 556
AcoI YGGCCR 1 cut(s) 1481
AcsI RAATTY 5 cut(s) 119, 1147, 1288, 1586, 1612
AcyI GRCGYC 1 cut(s) 1304
AfaI GTAC 4 cut(s) 435, 467, 570, 1414
AfiI CCNNNNNNNGG 2 cut(s) 323, 1300
AflIII ACRYGT 2 cut(s) 682, 1462
AjnI CCWGG 2 cut(s) 298, 670
AjuI GAANNNNNNNTTGG 4 cut(s) 407, 439, 1431, 1463
AleI CACNNNNGTG 1 cut(s) 1428
AluBI AGCT 3 cut(s) 703, 735, 1284
AluI AGCT 3 cut(s) 703, 735, 1284
Alw21I GWGCWC 2 cut(s) 1286, 1545
Alw26I GTCTC 2 cut(s) 1598, 1625
AlwI GGATC 2 cut(s) 543, 556
AoxI GGCC 3 cut(s) 1314, 1481, 1708
ApeKI GCWGC 4 cut(s) 376, 667, 816, 1086
ApoI RAATTY 5 cut(s) 119, 1147, 1288, 1586, 1612
Asp700I GAANNNNTTC 2 cut(s) 1368, 1401
AspLEI GCGC 3 cut(s) 381, 613, 1159
AspS9I GGNCC 1 cut(s) 346
AsuC2I CCSGG 2 cut(s) 324, 351
AsuHPI GGTGA 7 cut(s) 365, 701, 968, 1144, 1264, 1463, 1550
AvaII GGWCC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 1483
BamHI GGATCC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 1286
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 2 cut(s) 1286, 1545
BbvI GCAGC 4 cut(s) 388, 679, 803, 1098
BccI CCATC 8 cut(s) 539, 638, 654, 1034, 1129, 1209, 1608, 1694
BceAI ACGGC 1 cut(s) 1632
BciT130I CCWGG 2 cut(s) 300, 672
BclI TGATCA 2 cut(s) 292, 535
BcnI CCSGG 2 cut(s) 324, 351
BcoDI GTCTC 2 cut(s) 1598, 1625
BfaI CTAG 4 cut(s) 24, 338, 1260, 1720
BfmI CTRYAG 1 cut(s) 525
BglII AGATCT 1 cut(s) 1108
Bme1390I CCNGG 4 cut(s) 300, 324, 351, 672
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 3 cut(s) 347, 348, 550
BmrFI CCNGG 4 cut(s) 300, 324, 351, 672
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 3 cut(s) 84, 269, 845
BmuI ACTGGG 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 1 cut(s) 1086
BpuEI CTTGAG 1 cut(s) 1303
BpuMI CCSGG 2 cut(s) 324, 351
Bsa29I ATCGAT 1 cut(s) 694
BsaHI GRCGYC 1 cut(s) 1304
BsaJI CCNNGG 4 cut(s) 323, 349, 820, 1277
BsaWI WCCGGW 1 cut(s) 1415
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 1300
Bse1I ACTGG 7 cut(s) 198, 361, 576, 856, 859, 874, 881
BseBI CCWGG 2 cut(s) 300, 672
BseCI ATCGAT 1 cut(s) 694
BseDI CCNNGG 4 cut(s) 323, 349, 820, 1277
BseGI GGATG 6 cut(s) 49, 234, 295, 860, 1121, 1600
BseLI CCNNNNNNNGG 2 cut(s) 323, 1300
BseMII CTCAG 5 cut(s) 1122, 1198, 1372, 1609, 1636
BseNI ACTGG 7 cut(s) 198, 361, 576, 856, 859, 874, 881
BseRI GAGGAG 1 cut(s) 1544
BseXI GCAGC 4 cut(s) 388, 679, 803, 1098
Bsh1236I CGCG 3 cut(s) 381, 613, 1157
BshFI GGCC 3 cut(s) 1316, 1483, 1710
BshVI ATCGAT 1 cut(s) 694
BsiHKAI GWGCWC 2 cut(s) 1286, 1545
BsiSI CCGG 3 cut(s) 323, 351, 1416
BslFI GGGAC 2 cut(s) 359, 1207
BslI CCNNNNNNNGG 2 cut(s) 323, 1300
BsmAI GTCTC 2 cut(s) 1598, 1625
BsmFI GGGAC 2 cut(s) 359, 1207
BsnI GGCC 3 cut(s) 1316, 1483, 1710
Bsp1286I GDGCHC 2 cut(s) 1286, 1545
Bsp143I GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
BspANI GGCC 3 cut(s) 1316, 1483, 1710
BspCNI CTCAG 5 cut(s) 1123, 1197, 1371, 1608, 1635
BspDI ATCGAT 1 cut(s) 694
BspFNI CGCG 3 cut(s) 381, 613, 1157
BspLI GGNNCC 3 cut(s) 347, 348, 550
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 2 cut(s) 543, 556
BsrI ACTGG 7 cut(s) 198, 361, 576, 856, 859, 874, 881
BssECI CCNNGG 4 cut(s) 323, 349, 820, 1277
BssMI GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
BssNAI GTATAC 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 1304
BssT1I CCWWGG 1 cut(s) 820
Bst1107I GTATAC 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 300, 672
Bst4CI ACNGT 3 cut(s) 626, 641, 956
Bst6I CTCTTC 1 cut(s) 1340
BstACI GRCGYC 1 cut(s) 1304
BstAPI GCANNNNNTGC 1 cut(s) 1092
BstC8I GCNNGC 2 cut(s) 142, 615
BstDEI CTNAG 5 cut(s) 1131, 1184, 1358, 1595, 1622
BstDSI CCRYGG 1 cut(s) 1277
BstF5I GGATG 6 cut(s) 49, 234, 295, 860, 1121, 1600
BstFNI CGCG 3 cut(s) 381, 613, 1157
BstHHI GCGC 3 cut(s) 381, 613, 1159
BstKTI GATC 6 cut(s) 295, 372, 538, 551, 694, 1111
BstMAI GTCTC 2 cut(s) 1598, 1625
BstMBI GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 20, 1092
BstNI CCWGG 2 cut(s) 300, 672
BstNSI RCATGY 2 cut(s) 686, 1466
BstSCI CCNGG 4 cut(s) 298, 322, 349, 670
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 3 cut(s) 381, 613, 1157
BstV1I GCAGC 4 cut(s) 388, 679, 803, 1098
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 548, 1108
BstYI RGATCY 2 cut(s) 548, 1108
BstZ17I GTATAC 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 694
BsuRI GGCC 3 cut(s) 1316, 1483, 1710
BsuTUI ATCGAT 1 cut(s) 694
BtgI CCRYGG 1 cut(s) 1277
BtsCI GGATG 6 cut(s) 49, 234, 295, 860, 1121, 1600
BtsIMutI CAGTG 5 cut(s) 152, 205, 646, 897, 1192
Cac8I GCNNGC 2 cut(s) 142, 615
CfoI GCGC 3 cut(s) 381, 613, 1159
Cfr13I GGNCC 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 694
CseI GACGC 2 cut(s) 266, 1293
Csp6I GTAC 4 cut(s) 434, 466, 569, 1413
CviAII CATG 8 cut(s) 65, 162, 683, 1116, 1206, 1406, 1463, 1492
CviQI GTAC 4 cut(s) 434, 466, 569, 1413
DdeI CTNAG 5 cut(s) 1131, 1184, 1358, 1595, 1622
DpnI GATC 6 cut(s) 294, 371, 537, 550, 693, 1110
DpnII GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
EaeI YGGCCR 1 cut(s) 1481
Eam1104I CTCTTC 1 cut(s) 1340
EarI CTCTTC 1 cut(s) 1340
Ecl136II GAGCTC 1 cut(s) 1284
Eco130I CCWWGG 1 cut(s) 820
Eco147I AGGCCT 1 cut(s) 1316
Eco24I GRGCYC 1 cut(s) 1286
Eco47I GGWCC 1 cut(s) 346
Eco53kI GAGCTC 1 cut(s) 1284
EcoICRI GAGCTC 1 cut(s) 1284
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 298, 670
EcoT14I CCWWGG 1 cut(s) 820
EcoT22I ATGCAT 1 cut(s) 1497
EcoT38I GRGCYC 1 cut(s) 1286
ErhI CCWWGG 1 cut(s) 820
FaeI CATG 8 cut(s) 68, 165, 686, 1119, 1209, 1409, 1466, 1495
FalI AAGNNNNNCTT 2 cut(s) 1226, 1258
FaqI GGGAC 2 cut(s) 359, 1207
FatI CATG 8 cut(s) 64, 161, 682, 1115, 1205, 1405, 1462, 1491
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 2 cut(s) 292, 535
FblI GTMKAC 2 cut(s) 57, 679
FokI GGATG 6 cut(s) 56, 221, 282, 867, 1108, 1587
FriOI GRGCYC 1 cut(s) 1286
FspBI CTAG 4 cut(s) 24, 338, 1260, 1720
GlaI GCGC 3 cut(s) 380, 612, 1158
GsuI CTGGAG 1 cut(s) 1086
HaeIII GGCC 3 cut(s) 1316, 1483, 1710
HapII CCGG 3 cut(s) 323, 351, 1416
HgaI GACGC 2 cut(s) 266, 1293
HhaI GCGC 3 cut(s) 381, 613, 1159
Hin1I GRCGYC 1 cut(s) 1304
Hin1II CATG 8 cut(s) 68, 165, 686, 1119, 1209, 1409, 1466, 1495
Hin6I GCGC 3 cut(s) 379, 611, 1157
HinP1I GCGC 3 cut(s) 379, 611, 1157
HpaII CCGG 3 cut(s) 323, 351, 1416
HphI GGTGA 7 cut(s) 365, 701, 968, 1144, 1264, 1463, 1550
Hpy166II GTNNAC 4 cut(s) 58, 250, 356, 680
Hpy188I TCNGA 6 cut(s) 10, 256, 849, 978, 1132, 1361
Hpy188III TCNNGA 3 cut(s) 338, 584, 1575
Hpy8I GTNNAC 4 cut(s) 58, 250, 356, 680
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 379, 1076, 1433
HpyCH4III ACNGT 3 cut(s) 626, 641, 956
HpyCH4IV ACGT 1 cut(s) 1195
HpyCH4V TGCA 5 cut(s) 527, 1095, 1495, 1652, 1682
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 1092
HpyF3I CTNAG 5 cut(s) 1131, 1184, 1358, 1595, 1622
HpySE526I ACGT 1 cut(s) 1195
Hsp92I GRCGYC 1 cut(s) 1304
Hsp92II CATG 8 cut(s) 68, 165, 686, 1119, 1209, 1409, 1466, 1495
HspAI GCGC 3 cut(s) 379, 611, 1157
KflI GGGWCCC 1 cut(s) 346
Ksp22I TGATCA 2 cut(s) 292, 535
Kzo9I GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
LmnI GCTCC 2 cut(s) 664, 1281
Lsp1109I GCAGC 4 cut(s) 388, 679, 803, 1098
LweI GCATC 3 cut(s) 84, 269, 845
MaeI CTAG 4 cut(s) 24, 338, 1260, 1720
MaeII ACGT 1 cut(s) 1195
MaeIII GTNAC 4 cut(s) 584, 713, 1468, 1572
MalI GATC 6 cut(s) 294, 371, 537, 550, 693, 1110
MboI GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
MflI RGATCY 2 cut(s) 548, 1108
MhlI GDGCHC 2 cut(s) 1286, 1545
MlsI TGGCCA 1 cut(s) 1483
MluNI TGGCCA 1 cut(s) 1483
MlyI GAGTC 3 cut(s) 56, 778, 1580
MmeI TCCRAC 4 cut(s) 279, 374, 782, 1202
Mox20I TGGCCA 1 cut(s) 1483
Mph1103I ATGCAT 1 cut(s) 1497
MroXI GAANNNNTTC 2 cut(s) 1368, 1401
MscI TGGCCA 1 cut(s) 1483
MseI TTAA 3 cut(s) 951, 995, 1211
MslI CAYNNNNRTG 3 cut(s) 687, 1428, 1430
Msp20I TGGCCA 1 cut(s) 1483
MspI CCGG 3 cut(s) 323, 351, 1416
MspR9I CCNGG 4 cut(s) 300, 324, 351, 672
MvaI CCWGG 2 cut(s) 300, 672
MvnI CGCG 3 cut(s) 381, 613, 1157
MwoI GCNNNNNNNGC 2 cut(s) 20, 1092
NciI CCSGG 2 cut(s) 324, 351
NdeII GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
NlaIII CATG 8 cut(s) 68, 165, 686, 1119, 1209, 1409, 1466, 1495
NlaIV GGNNCC 3 cut(s) 347, 348, 550
NmuCI GTSAC 3 cut(s) 584, 1468, 1572
NsiI ATGCAT 1 cut(s) 1497
NspI RCATGY 2 cut(s) 686, 1466
OliI CACNNNNGTG 1 cut(s) 1428
PceI AGGCCT 1 cut(s) 1316
PciI ACATGT 2 cut(s) 682, 1462
PdmI GAANNNNTTC 2 cut(s) 1368, 1401
PfeI GAWTC 9 cut(s) 5, 221, 423, 449, 908, 973, 1172, 1397, 1419
PfoI TCCNGGA 1 cut(s) 298
PleI GAGTC 3 cut(s) 55, 777, 1579
PpsI GAGTC 3 cut(s) 55, 777, 1579
PpuMI RGGWCCY 1 cut(s) 346
PscI ACATGT 2 cut(s) 682, 1462
Psp124BI GAGCTC 1 cut(s) 1286
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 298, 670
PspGI CCWGG 2 cut(s) 298, 670
PspN4I GGNNCC 3 cut(s) 347, 348, 550
PspPI GGNCC 1 cut(s) 346
PspPPI RGGWCCY 1 cut(s) 346
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 2 cut(s) 548, 1108
RsaI GTAC 4 cut(s) 435, 467, 570, 1414
RsaNI GTAC 4 cut(s) 434, 466, 569, 1413
RseI CAYNNNNRTG 3 cut(s) 687, 1428, 1430
SacI GAGCTC 1 cut(s) 1286
SaqAI TTAA 3 cut(s) 951, 995, 1211
Sau3AI GATC 6 cut(s) 292, 369, 535, 548, 691, 1108
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 3 cut(s) 56, 778, 1580
ScrFI CCNGG 4 cut(s) 300, 324, 351, 672
SduI GDGCHC 2 cut(s) 1286, 1545
SfaNI GCATC 3 cut(s) 84, 269, 845
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 3 cut(s) 687, 1428, 1430
SmlI CTYRAG 1 cut(s) 1318
SmoI CTYRAG 1 cut(s) 1318
SseBI AGGCCT 1 cut(s) 1316
SspI AATATT 1 cut(s) 114
SspMI CTAG 4 cut(s) 24, 338, 1260, 1720
SstI GAGCTC 1 cut(s) 1286
StuI AGGCCT 1 cut(s) 1316
StyD4I CCNGG 4 cut(s) 298, 322, 349, 670
StyI CCWWGG 1 cut(s) 820
TaaI ACNGT 3 cut(s) 626, 641, 956
TaiI ACGT 1 cut(s) 1198
TaqI TCGA 2 cut(s) 694, 1009
TatI WGTACW 2 cut(s) 433, 568
TauI GCSGC 6 cut(s) 17, 20, 23, 140, 580, 1086
TfiI GAWTC 9 cut(s) 5, 221, 423, 449, 908, 973, 1172, 1397, 1419
Tru1I TTAA 3 cut(s) 951, 995, 1211
Tru9I TTAA 3 cut(s) 951, 995, 1211
TscAI CASTG 5 cut(s) 159, 205, 646, 904, 1192
TseFI GTSAC 3 cut(s) 584, 1468, 1572
TseI GCWGC 4 cut(s) 376, 667, 816, 1086
Tsp45I GTSAC 3 cut(s) 584, 1468, 1572
TspDTI ATGAA 7 cut(s) 104, 223, 519, 874, 1358, 1394, 1410
TspGWI ACGGA 3 cut(s) 43, 1217, 1294
TspRI CASTG 5 cut(s) 159, 205, 646, 904, 1192
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 5 cut(s) 119, 1147, 1288, 1586, 1612
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 2 cut(s) 686, 1466
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XmiI GTMKAC 2 cut(s) 57, 679
XmnI GAANNNNTTC 2 cut(s) 1368, 1401
XspI CTAG 4 cut(s) 24, 338, 1260, 1720
Zsp2I ATGCAT 1 cut(s) 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.