Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018668.1

Orthogroup ID

OG0021039

Physical Location & Seq

Genomic Coordinates Forward (+)

249 .. 4676

Gene Structure 4428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018668.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgaggtacaactataccattttttcaaatgagtatgaagattactttacttatactgcagtagatgaccaaagtgatggatcccaatgggtgatgaatgtactggggcggctacgtgactttgatataaacattgatattgtgcgagcagattactgttatggccattacaacgatagagggtgtgagagatgggagcagcctggttgcagacatgttggtgatcgatttgagctacaacaaggttattttcaagcaattaccagctctgcttcatttacgagtaattcaaatacgagtcaggacatagtgattgtaaagcaacttgttggaactattgtggctgccttggtttcaactatcagtttagtaatcagactggatgccagttttggactggaaactggaagtacattaattgaagacctcactgatgatgattcaaggatatttctttataaacaaagccaactcctactattaacggcatgggagttatggaaagatggtgcagggttaacattcaaagatccaacattaggtgattcatgcaacgaggatcaattgctgagatgcatccatgttggtctactatgtgtggaggagaatggagccaatcagcctactatgttagaagtcatttccatgttgacaaatgaaagcatgtcactaccggcatcgatctacaaagccagcattctatatatagagaaaaggattgagaactggcacagttggaaagggttcagaaactatgtcgttaaatactatgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

258

Amino Acids

29.54

Weight (kDa)

4.63

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15091
rosa_multiflora	Rmu_sc0018668.1_g000001
rosa_samantha	Rh5AG178000 Rh5BG177100 Rh5CG193600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	589
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	4 cut(s)	75, 88, 524, 567
AcoI	YGGCCR	1 cut(s)	163
AfaI	GTAC	3 cut(s)	8, 102, 412
AfiI	CCNNNNNNNGG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	7 cut(s)	27, 254, 291, 357, 422, 444, 526
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	2 cut(s)	235, 267
AluI	AGCT	2 cut(s)	235, 267
AlwI	GGATC	4 cut(s)	75, 88, 524, 567
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	199, 344
AseI	ATTAAT	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	743
AsuHPI	GGTGA	3 cut(s)	103, 233, 554
BalI	TGGCCA	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	211, 331
BccI	CCATC	3 cut(s)	71, 186, 500
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	3 cut(s)	110, 200, 345
BlsI	GCNGC	3 cut(s)	111, 201, 346
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	82, 613
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	4 cut(s)	373, 563, 585, 686
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	429
Bsa29I	ATCGAT	2 cut(s)	226, 680
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	6 cut(s)	108, 384, 387, 402, 409, 731
BseBI	CCWGG	1 cut(s)	204
BseCI	ATCGAT	2 cut(s)	226, 680
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	388, 576
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	6 cut(s)	108, 384, 387, 402, 409, 731
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	211, 331
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	165
BshVI	ATCGAT	2 cut(s)	226, 680
BsiSI	CCGG	1 cut(s)	674
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	80, 223, 529, 559, 681
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	561
BspDI	ATCGAT	2 cut(s)	226, 680
BspLI	GGNNCC	2 cut(s)	82, 613
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	4 cut(s)	75, 88, 524, 567
BsrFI	RCCGGY	1 cut(s)	673
BsrI	ACTGG	6 cut(s)	108, 384, 387, 402, 409, 731
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	5 cut(s)	80, 223, 529, 559, 681
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	158, 734
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	147, 694
BstDEI	CTNAG	1 cut(s)	569
BstF5I	GGATG	2 cut(s)	388, 576
BstKTI	GATC	5 cut(s)	83, 226, 532, 562, 684
BstMBI	GATC	5 cut(s)	80, 223, 529, 559, 681
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	218, 667
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	211, 331
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	80, 529
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	2 cut(s)	80, 529
Bsu15I	ATCGAT	2 cut(s)	226, 680
BsuRI	GGCC	1 cut(s)	165
BsuTUI	ATCGAT	2 cut(s)	226, 680
BtsCI	GGATG	2 cut(s)	388, 576
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	147, 694
Cfr10I	RCCGGY	1 cut(s)	673
ClaI	ATCGAT	2 cut(s)	226, 680
Csp6I	GTAC	3 cut(s)	7, 101, 411
CviAII	CATG	6 cut(s)	215, 489, 549, 581, 646, 664
CviQI	GTAC	3 cut(s)	7, 101, 411
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	5 cut(s)	82, 225, 531, 561, 683
DpnII	GATC	5 cut(s)	80, 223, 529, 559, 681
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	6 cut(s)	218, 492, 552, 584, 649, 667
FatI	CATG	6 cut(s)	214, 488, 548, 580, 645, 663
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	110, 200, 345
FokI	GGATG	2 cut(s)	395, 563
Fsp4HI	GCNGC	3 cut(s)	110, 200, 345
GluI	GCNGC	3 cut(s)	110, 200, 345
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	674
Hin1II	CATG	6 cut(s)	218, 492, 552, 584, 649, 667
HincII	GTYRAC	2 cut(s)	519, 651
HindII	GTYRAC	2 cut(s)	519, 651
HinfI	GANTC	3 cut(s)	298, 440, 545
HpaI	GTTAAC	1 cut(s)	519
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	3 cut(s)	103, 233, 554
Hpy166II	GTNNAC	3 cut(s)	519, 590, 651
Hpy188I	TCNGA	2 cut(s)	377, 749
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	3 cut(s)	519, 590, 651
HpyCH4III	ACNGT	2 cut(s)	158, 734
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	59, 210, 512, 552, 576
HpyF3I	CTNAG	1 cut(s)	569
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	6 cut(s)	218, 492, 552, 584, 649, 667
KspAI	GTTAAC	1 cut(s)	519
Kzo9I	GATC	5 cut(s)	80, 223, 529, 559, 681
LmnI	GCTCC	2 cut(s)	196, 611
Lsp1109I	GCAGC	2 cut(s)	211, 331
LweI	GCATC	4 cut(s)	373, 563, 585, 686
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	116, 666
MalI	GATC	5 cut(s)	82, 225, 531, 561, 683
MboI	GATC	5 cut(s)	80, 223, 529, 559, 681
MboII	GAAGA	2 cut(s)	50, 434
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	2 cut(s)	80, 529
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	4 cut(s)	258, 286, 417, 563
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	3 cut(s)	310, 557, 716
MnlI	CCTC	4 cut(s)	173, 437, 550, 595
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	4 cut(s)	416, 482, 518, 762
MslI	CAYNNNNRTG	2 cut(s)	219, 644
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	204
NdeII	GATC	5 cut(s)	80, 223, 529, 559, 681
NlaIII	CATG	6 cut(s)	218, 492, 552, 584, 649, 667
NlaIV	GGNNCC	2 cut(s)	82, 613
NmuCI	GTSAC	2 cut(s)	116, 666
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	2 cut(s)	218, 667
PciI	ACATGT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	2 cut(s)	440, 545
PkrI	GCNGC	3 cut(s)	111, 201, 346
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	116
PscI	ACATGT	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	82, 613
PstI	CTGCAG	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	80, 529
RsaI	GTAC	3 cut(s)	8, 102, 412
RsaNI	GTAC	3 cut(s)	7, 101, 411
RseI	CAYNNNNRTG	2 cut(s)	219, 644
SaqAI	TTAA	4 cut(s)	416, 482, 518, 762
SatI	GCNGC	3 cut(s)	110, 200, 345
Sau3AI	GATC	5 cut(s)	80, 223, 529, 559, 681
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	7 cut(s)	8, 118, 237, 247, 269, 429, 544
SfaNI	GCATC	4 cut(s)	373, 563, 585, 686
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	219, 644
Sse9I	AATT	4 cut(s)	258, 286, 417, 563
SsiI	CCGC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	158, 734
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	226, 680
TasI	AATT	4 cut(s)	258, 286, 417, 563
TatI	WGTACW	2 cut(s)	100, 410
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	440, 545
Tru1I	TTAA	4 cut(s)	416, 482, 518, 762
Tru9I	TTAA	4 cut(s)	416, 482, 518, 762
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	116, 666
TseI	GCWGC	2 cut(s)	199, 344
Tsp45I	GTSAC	2 cut(s)	116, 666
TspDTI	ATGAA	5 cut(s)	51, 110, 264, 537, 672
TspRI	CASTG	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	416
XceI	RCATGY	2 cut(s)	218, 667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	743
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.