FvH4_3g16830

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016219
Physical Location & Seq
Reverse (-)
10640174 .. 10641727
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16830.t1

Sequence Viewer

Length: 672 bp
ATGGCTGCCTCTGTGTTTAAGCTCTCAGTTTTGTTGAGCCTGCTCTCCAATCTGAACTTGGGTCTCTGGCCAGAAGCTCCGAAAAGCGTGGCAACGTTTCCACCATCATGTAACAGCATAGAGTGCCCAAGCTATGACTCCATTGAAGTTGGCAATGGCTATGAAATTCGTCGGTACAATTCGAGTGAATGGATATCAACTTCTCCTATTCAGGACATTTCTCTGGTTGCTGCCACCAGAACTGGCTTCTTACAGCTGTTTGATTACATTCAAGGGAAGAACGAGTATGGTGAGAAAATAGAGATGACTGCGCCAGTGCTCAGCGAAGTTCAACCAAGCGATGGACCCTTCTGTGAGTCTTCATTTGTGGTGAGCTTTTATGTGCCAAAGAAGAACCAAGCAAAACCACCACCAGCAGAAGGCCTCCATGTTCAAAAATGGACATCTACATTTGTGGCAGTGAGACAATTCAGTGGGTTTGTTTCCGACTATGATATCGGTGTAGAAGCTGCTGCCTTGCAGTCCAGCCTTGCCGGCACTGTTTGGTCTAAAGCCATTGAGAAAAGCCATGGAGCTGATCGCACTACAATTTATACTGTTGCACAGTACAACTCTCCATTTGAATTCGATCACAGGGTGAATGAGATCTGGATGTCATTTGATATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

224

Amino Acids

24.72

Weight (kDa)

4.85

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 40 - 218 1e-51 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17100
fragaria_vesca FvH4_3g16830
malus_domestica MD10G1193800.v1.1
prunus_persica Prupe.4G150500_v2.0.a1
pyrus_communis pycom10g16760
rosa_chinensis RchiOBHm_Chr5g0028041
rosa_laevigata RLG00000033060
rosa_multiflora Rmu_sc0009432.1_g000007
rosa_roxburghii Rroxscaffold_1G00051620
rosa_rugosa Rorug05G0103700
rosa_samantha Rh5AG197300 Rh5BG195500 Rh5CG215700 Rh5DG197100
rosa_wichuraiana Rw5G017990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 341
AclI AACGTT 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 2 cut(s) 165, 623
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 2 cut(s) 176, 608
AfiI CCNNNNNNNGG 2 cut(s) 341, 419
AgsI TTSAA 5 cut(s) 146, 272, 332, 434, 623
AluBI AGCT 7 cut(s) 22, 77, 132, 256, 375, 509, 575
AluI AGCT 7 cut(s) 22, 77, 132, 256, 375, 509, 575
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 68, 457
AoxI GGCC 2 cut(s) 68, 421
ApeKI GCWGC 4 cut(s) 5, 230, 509, 512
ApoI RAATTY 2 cut(s) 165, 623
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 3 cut(s) 302, 382, 649
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 217, 496, 499
BccI CCATC 2 cut(s) 112, 335
BcoDI GTCTC 2 cut(s) 68, 457
BglI GCCNNNNNGGC 1 cut(s) 534
BglII AGATCT 1 cut(s) 645
BisI GCNGC 4 cut(s) 6, 231, 510, 513
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 4 cut(s) 7, 232, 511, 514
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 568
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 419
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 247, 314
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 2 cut(s) 341, 419
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 39, 334
BseNI ACTGG 2 cut(s) 247, 314
BseSI GKGCMC 1 cut(s) 128
BseXI GCAGC 3 cut(s) 217, 496, 499
BshFI GGCC 2 cut(s) 70, 423
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 341, 419
BsmAI GTCTC 2 cut(s) 68, 457
BsnI GGCC 2 cut(s) 70, 423
Bso31I GGTCTC 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 128, 321
Bsp143I GATC 3 cut(s) 577, 628, 645
Bsp1720I GCTNAGC 1 cut(s) 320
Bsp19I CCATGG 1 cut(s) 568
BspANI GGCC 2 cut(s) 70, 423
BspCNI CTCAG 2 cut(s) 38, 333
BspLI GGNNCC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 2 cut(s) 247, 314
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 3 cut(s) 577, 628, 645
BssT1I CCWWGG 1 cut(s) 568
Bst4CI ACNGT 3 cut(s) 541, 598, 606
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 41, 535
BstDEI CTNAG 2 cut(s) 25, 320
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 1 cut(s) 657
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 580, 631, 648
BstMAI GTCTC 2 cut(s) 68, 457
BstMBI GATC 3 cut(s) 577, 628, 645
BstMWI GCNNNNNNNGC 2 cut(s) 123, 534
BstSLI GKGCMC 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 217, 496, 499
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuRI GGCC 2 cut(s) 70, 423
BtgI CCRYGG 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 657
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 4 cut(s) 321, 465, 478, 537
Cac8I GCNNGC 2 cut(s) 41, 535
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 175, 607
CviAII CATG 3 cut(s) 108, 428, 569
CviQI GTAC 2 cut(s) 175, 607
DdeI CTNAG 2 cut(s) 25, 320
DpnI GATC 3 cut(s) 579, 630, 647
DpnII GATC 3 cut(s) 577, 628, 645
DraIII CACNNNGTG 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 568
Eco147I AGGCCT 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 68
Eco32I GATATC 2 cut(s) 195, 496
Eco47I GGWCC 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 623
EcoRV GATATC 2 cut(s) 195, 496
EcoT14I CCWWGG 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 3 cut(s) 111, 431, 572
FatI CATG 3 cut(s) 107, 427, 568
Fnu4HI GCNGC 4 cut(s) 6, 231, 510, 513
FokI GGATG 1 cut(s) 664
Fsp4HI GCNGC 4 cut(s) 6, 231, 510, 513
GlaI GCGC 1 cut(s) 312
GluI GCNGC 4 cut(s) 6, 231, 510, 513
HaeIII GGCC 2 cut(s) 70, 423
HapII CCGG 1 cut(s) 534
HhaI GCGC 1 cut(s) 313
Hin1II CATG 3 cut(s) 111, 431, 572
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 2 cut(s) 137, 356
HpaII CCGG 1 cut(s) 534
HphI GGTGA 3 cut(s) 302, 382, 649
Hpy188I TCNGA 3 cut(s) 54, 81, 487
Hpy188III TCNNGA 2 cut(s) 212, 649
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 358, 413
HpyCH4III ACNGT 3 cut(s) 541, 598, 606
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 520, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 534
HpyF3I CTNAG 2 cut(s) 25, 320
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 3 cut(s) 111, 431, 572
HspAI GCGC 1 cut(s) 311
KroI GCCGGC 1 cut(s) 533
KroNI GCCGGC 1 cut(s) 535
Kzo9I GATC 3 cut(s) 577, 628, 645
LmnI GCTCC 2 cut(s) 82, 572
Lsp1109I GCAGC 3 cut(s) 217, 496, 499
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 579, 630, 647
MboI GATC 3 cut(s) 577, 628, 645
MboII GAAGA 3 cut(s) 289, 351, 403
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 2 cut(s) 128, 321
MlsI TGGCCA 1 cut(s) 70
MluCI AATT 5 cut(s) 165, 178, 467, 588, 623
MluNI TGGCCA 1 cut(s) 70
MlyI GAGTC 2 cut(s) 131, 365
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 2 cut(s) 19, 434
Mox20I TGGCCA 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 533
MscI TGGCCA 1 cut(s) 70
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 106
Msp20I TGGCCA 1 cut(s) 70
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 123, 534
NaeI GCCGGC 1 cut(s) 535
NcoI CCATGG 1 cut(s) 568
NdeII GATC 3 cut(s) 577, 628, 645
NgoMIV GCCGGC 1 cut(s) 533
NlaIII CATG 3 cut(s) 111, 431, 572
NlaIV GGNNCC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 423
PdiI GCCGGC 1 cut(s) 535
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 4 cut(s) 7, 232, 511, 514
PleI GAGTC 2 cut(s) 131, 364
PpsI GAGTC 2 cut(s) 131, 364
Psp1406I AACGTT 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 645
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 2 cut(s) 176, 608
RsaNI GTAC 2 cut(s) 175, 607
RseI CAYNNNNRTG 1 cut(s) 106
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 4 cut(s) 6, 231, 510, 513
Sau3AI GATC 3 cut(s) 577, 628, 645
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 2 cut(s) 131, 365
SduI GDGCHC 2 cut(s) 128, 321
SetI ASST 8 cut(s) 24, 79, 98, 134, 258, 377, 511, 577
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 5 cut(s) 165, 178, 467, 588, 623
SseBI AGGCCT 1 cut(s) 423
StuI AGGCCT 1 cut(s) 423
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 3 cut(s) 541, 598, 606
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 182, 627
TasI AATT 5 cut(s) 165, 178, 467, 588, 623
TatI WGTACW 1 cut(s) 606
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 4 cut(s) 321, 465, 478, 544
TseI GCWGC 4 cut(s) 5, 230, 509, 512
TspDTI ATGAA 2 cut(s) 177, 351
TspRI CASTG 4 cut(s) 321, 465, 478, 544
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 2 cut(s) 165, 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.