Prupe.4G150500_v2.0.a1

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016219
Physical Location & Seq
Reverse (-)
8617981 .. 8619446
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G150500.1

Sequence Viewer

Length: 690 bp
ATGGCTGCTTCTAGCATGTTTAAGCTATCATTTTTCTTGAGCCTTCTTTCCCATCTGAACTTGGGTCTGTGGCCACAAACTCATAGCAGCTTGGCCATATTTCCACCATCATGTAACAGCATAGAGTGCCCAAGCTTTGACACAATTGAGGTTGGCAATGGCTATGAAGTCCGTCGATACAATTCGAGTGAATGGATATCCACTTCTCCAATTCAAGATATCTCTCTTGTTGAAGCCACCAGAACTGGCTTCTTACAGCTGTTTGAGTACATTCAAGGGAAGAACAAGTACGGAGAGAAAATAGAGATGACTGCCCCAGTGCTCAGTGAAGTTTCACCAAGCGATGGACCCTTTTGTGAATCTTCATTTGTGGTGAGCTTCTATGTGCCAAAGAAGAACCAAGAAAACCCACCACCAGCAGAAGGCCTCCATGTCCAAAAATGGAAAACCACATATGTTGCAGTGAGACAATTCAGTGGGTTTGTATCAGACGACAGCGTTGGAGAAGAAGCTGCTGCCTTGAAGGCCAGTCTTGCAGGTACTGTTTGGTCTGCCGCCATCGAGAAAAGCCATGCAGCTGATCATACTTCAGTTTATACTGTTGCACAGTACAATTCCCCATTTGAATTTGATCATAGGGTGAATGAGATCTGGTTGTCCTTCGATTTGGAAGACGGCGTTGCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

230

Amino Acids

25.35

Weight (kDa)

4.85

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17100
fragaria_vesca FvH4_3g16830
malus_domestica MD10G1193800.v1.1
prunus_persica Prupe.4G150500_v2.0.a1
pyrus_communis pycom10g16760
rosa_chinensis RchiOBHm_Chr5g0028041
rosa_laevigata RLG00000033060
rosa_multiflora Rmu_sc0009432.1_g000007
rosa_roxburghii Rroxscaffold_1G00051620
rosa_rugosa Rorug05G0103700
rosa_samantha Rh5AG197300 Rh5BG195500 Rh5CG215700 Rh5DG197100
rosa_wichuraiana Rw5G017990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 527
AccB7I CCANNNNNTGG 1 cut(s) 344
AciI CCGC 1 cut(s) 555
AcoI YGGCCR 2 cut(s) 71, 93
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 4 cut(s) 269, 290, 541, 611
AfiI CCNNNNNNNGG 2 cut(s) 344, 422
AgsI TTSAA 5 cut(s) 215, 233, 275, 523, 626
AluBI AGCT 7 cut(s) 25, 90, 135, 259, 378, 512, 578
AluI AGCT 7 cut(s) 25, 90, 135, 259, 378, 512, 578
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 460
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 4 cut(s) 71, 93, 424, 525
ApeKI GCWGC 5 cut(s) 5, 87, 512, 515, 575
ApoI RAATTY 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 327, 385, 652
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 2 cut(s) 73, 95
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 99, 499, 502, 587
BccI CCATC 4 cut(s) 60, 115, 338, 566
BclI TGATCA 2 cut(s) 580, 631
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 524
BglII AGATCT 1 cut(s) 648
BisI GCNGC 6 cut(s) 6, 88, 513, 516, 555, 576
BlsI GCNGC 6 cut(s) 7, 89, 514, 517, 556, 577
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 349
BmrI ACTGGG 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 422
Bse1I ACTGG 3 cut(s) 250, 317, 528
Bse3DI GCAATG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 344, 422
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 3 cut(s) 250, 317, 528
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 4 cut(s) 99, 499, 502, 587
BshFI GGCC 4 cut(s) 73, 95, 426, 527
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 344, 422
BsmAI GTCTC 1 cut(s) 460
BsnI GGCC 4 cut(s) 73, 95, 426, 527
Bsp1286I GDGCHC 2 cut(s) 131, 324
Bsp143I GATC 3 cut(s) 580, 631, 648
BspACI CCGC 1 cut(s) 555
BspANI GGCC 4 cut(s) 73, 95, 426, 527
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 3 cut(s) 250, 317, 528
BssMI GATC 3 cut(s) 580, 631, 648
Bst4CI ACNGT 3 cut(s) 544, 601, 609
BstAPI GCANNNNNTGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 323
BstKTI GATC 3 cut(s) 583, 634, 651
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 3 cut(s) 580, 631, 648
BstMWI GCNNNNNNNGC 3 cut(s) 126, 524, 533
BstNSI RCATGY 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 4 cut(s) 99, 499, 502, 587
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
BsuRI GGCC 4 cut(s) 73, 95, 426, 527
BtgZI GCGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 4 cut(s) 324, 331, 468, 481
BveI ACCTGC 1 cut(s) 527
CaiI CAGNNNCTG 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 4 cut(s) 268, 289, 540, 610
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 4 cut(s) 16, 111, 431, 572
CviQI GTAC 4 cut(s) 268, 289, 540, 610
DdeI CTNAG 1 cut(s) 323
DpnI GATC 3 cut(s) 582, 633, 650
DpnII GATC 3 cut(s) 580, 631, 648
EaeI YGGCCR 2 cut(s) 71, 93
Eco147I AGGCCT 1 cut(s) 426
Eco32I GATATC 2 cut(s) 198, 220
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 573
EcoRV GATATC 2 cut(s) 198, 220
FaeI CATG 4 cut(s) 19, 114, 434, 575
FatI CATG 4 cut(s) 15, 110, 430, 571
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 2 cut(s) 580, 631
Fnu4HI GCNGC 6 cut(s) 6, 88, 513, 516, 555, 576
Fsp4HI GCNGC 6 cut(s) 6, 88, 513, 516, 555, 576
FspBI CTAG 1 cut(s) 12
GluI GCNGC 6 cut(s) 6, 88, 513, 516, 555, 576
HaeIII GGCC 4 cut(s) 73, 95, 426, 527
Hin1II CATG 4 cut(s) 19, 114, 434, 575
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 1 cut(s) 359
HphI GGTGA 3 cut(s) 327, 385, 652
Hpy188I TCNGA 2 cut(s) 57, 490
Hpy188III TCNNGA 3 cut(s) 37, 215, 562
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 4 cut(s) 53, 416, 517, 670
HpyCH4III ACNGT 3 cut(s) 544, 601, 609
HpyCH4V TGCA 5 cut(s) 461, 536, 575, 605, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 524, 533
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 4 cut(s) 19, 114, 434, 575
Ksp22I TGATCA 2 cut(s) 580, 631
Kzo9I GATC 3 cut(s) 580, 631, 648
LpnPI CCDG 7 cut(s) 231, 253, 330, 429, 522, 541, 637
Lsp1109I GCAGC 4 cut(s) 99, 499, 502, 587
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 113
MalI GATC 3 cut(s) 582, 633, 650
MboI GATC 3 cut(s) 580, 631, 648
MboII GAAGA 5 cut(s) 292, 354, 406, 518, 683
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 2 cut(s) 131, 324
MlsI TGGCCA 2 cut(s) 73, 95
MluCI AATT 6 cut(s) 144, 181, 210, 470, 613, 626
MluNI TGGCCA 2 cut(s) 73, 95
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 2 cut(s) 142, 437
Mox20I TGGCCA 2 cut(s) 73, 95
MscI TGGCCA 2 cut(s) 73, 95
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 109
Msp20I TGGCCA 2 cut(s) 73, 95
MspA1I CMGCKG 2 cut(s) 259, 578
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 126, 524, 533
NdeI CATATG 1 cut(s) 454
NdeII GATC 3 cut(s) 580, 631, 648
NlaIII CATG 4 cut(s) 19, 114, 434, 575
NlaIV GGNNCC 1 cut(s) 349
NspI RCATGY 1 cut(s) 19
PceI AGGCCT 1 cut(s) 426
PfeI GAWTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 6 cut(s) 7, 89, 514, 517, 556, 577
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 648
PvuII CAGCTG 2 cut(s) 259, 578
RsaI GTAC 4 cut(s) 269, 290, 541, 611
RsaNI GTAC 4 cut(s) 268, 289, 540, 610
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 6 cut(s) 6, 88, 513, 516, 555, 576
Sau3AI GATC 3 cut(s) 580, 631, 648
Sau96I GGNCC 1 cut(s) 347
SduI GDGCHC 2 cut(s) 131, 324
SetI ASST 9 cut(s) 27, 92, 137, 153, 261, 380, 514, 541, 580
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 6 cut(s) 144, 181, 210, 470, 613, 626
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 1 cut(s) 555
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 426
TaaI ACNGT 3 cut(s) 544, 601, 609
TaqI TCGA 4 cut(s) 175, 185, 561, 663
TasI AATT 6 cut(s) 144, 181, 210, 470, 613, 626
TatI WGTACW 2 cut(s) 267, 609
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 4 cut(s) 324, 331, 468, 481
TseI GCWGC 5 cut(s) 5, 87, 512, 515, 575
TspDTI ATGAA 2 cut(s) 180, 354
TspGWI ACGGA 2 cut(s) 161, 306
TspRI CASTG 4 cut(s) 324, 331, 468, 481
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 626
XceI RCATGY 1 cut(s) 19
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.