FvH4_3g21921

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0020131
Physical Location & Seq
Reverse (-)
14997685 .. 14998290
606 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21921.t1

Sequence Viewer

Length: 606 bp
ATGCAAATCTTTGTTAAGACCCTCACCGGTAAGACAATCACTTTGGAGGTTGAGAGTTCCGATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCACACTCTTGCAGATTACAACATCCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTTTGTGGTGGCATGCAAATCTTTGTCAAGACCCTTACTGGCAAAACCATCATTGTGGAAGTCGAAAGCTCTGACACCATTGATAATGTGAAAGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAAAGGTTGATTTTTGCAGGCAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAATATTCAAAAGGAGTCCACTCTGCAATTAGTGCTTCGTCTGCGCGGTGGTATGCAAATCATTGTCAAAACGTTGACAAGAAAGACCATAACATTGGAGGTAGAGAGTTCAGATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGCATCCCTCTGGACCAGCAAAGGCTCATATTCGCTGGAAAGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

202

Amino Acids

22.43

Weight (kDa)

7.8

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 71 2e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 73 5.6e-32 Ubiquitin family
Rad60-SLD PF11976 77 - 147 2.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 79 - 150 9.4e-31 Ubiquitin family
ubiquitin PF00240 155 - 186 7.3e-07 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020131)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21853 FvH4_3g21921 FvH4_3g21922
prunus_persica Prupe.4G025900_v2.0.a1
pyrus_communis pycom03g15910
rosa_roxburghii Rroxscaffold_6G00411980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 450
AciI CCGC 1 cut(s) 450
AclI AACGTT 1 cut(s) 476
AcsI RAATTY 1 cut(s) 315
AdeI CACNNNGTG 1 cut(s) 208
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 320, 413
AluBI AGCT 6 cut(s) 148, 285, 311, 376, 539, 602
AluI AGCT 6 cut(s) 148, 285, 311, 376, 539, 602
ApeKI GCWGC 2 cut(s) 373, 599
ApoI RAATTY 1 cut(s) 315
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AsiGI ACCGGT 1 cut(s) 26
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 569
BbvI GCAGC 1 cut(s) 385
BccI CCATC 3 cut(s) 149, 272, 377
BfaI CTAG 1 cut(s) 149
BisI GCNGC 2 cut(s) 374, 600
BlsI GCNGC 2 cut(s) 375, 601
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmsI GCATC 1 cut(s) 568
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 259
BseGI GGATG 4 cut(s) 160, 180, 388, 559
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 450
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 1 cut(s) 27
BsmI GAATGC 1 cut(s) 105
BspACI CCGC 1 cut(s) 450
BspFNI CGCG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 436
BstC8I GCNNGC 3 cut(s) 230, 367, 371
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 4 cut(s) 160, 180, 388, 559
BstFNI CGCG 1 cut(s) 450
BstHHI GCGC 1 cut(s) 450
BstMWI GCNNNNNNNGC 2 cut(s) 436, 445
BstNSI RCATGY 1 cut(s) 232
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 385
BstXI CCANNNNNNTGG 2 cut(s) 271, 499
BtsCI GGATG 4 cut(s) 160, 180, 388, 559
Cac8I GCNNGC 3 cut(s) 230, 367, 371
CfoI GCGC 1 cut(s) 450
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 569
CseI GACGC 1 cut(s) 203
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 1 cut(s) 229
CviJI RGCY 8 cut(s) 127, 148, 285, 311, 376, 539, 581, 602
CviKI_1 RGCY 8 cut(s) 127, 148, 285, 311, 376, 539, 581, 602
DdeI CTNAG 1 cut(s) 540
DraIII CACNNNGTG 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 569
FaeI CATG 1 cut(s) 232
FaiI YATR 5 cut(s) 230, 405, 458, 494, 585
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 374, 600
FokI GGATG 4 cut(s) 167, 167, 395, 546
Fsp4HI GCNGC 2 cut(s) 374, 600
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 449
GluI GCNGC 2 cut(s) 374, 600
GsuI CTGGAG 1 cut(s) 96
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 450
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HinfI GANTC 4 cut(s) 88, 191, 419, 544
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 423, 480
Hpy188I TCNGA 3 cut(s) 61, 289, 517
Hpy188III TCNNGA 7 cut(s) 92, 113, 184, 244, 320, 548, 567
Hpy8I GTNNAC 2 cut(s) 423, 480
HpyAV CCTTC 2 cut(s) 181, 381
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 7 cut(s) 4, 137, 170, 232, 365, 430, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 436, 445
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 1 cut(s) 476
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 568
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 158
MboII GAAGA 1 cut(s) 191
MfeI CAATTG 2 cut(s) 66, 522
MluCI AATT 4 cut(s) 66, 315, 431, 522
MlyI GAGTC 1 cut(s) 428
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 1 cut(s) 27
MunI CAATTG 2 cut(s) 66, 522
Mva1269I GAATGC 1 cut(s) 105
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 436, 445
NlaIII CATG 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 158
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 88, 191, 544
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 2 cut(s) 375, 601
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp1406I AACGTT 1 cut(s) 476
PspPI GGNCC 1 cut(s) 569
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 374, 600
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 428
SfaNI GCATC 1 cut(s) 568
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SphI GCATGC 1 cut(s) 232
Sse9I AATT 4 cut(s) 66, 315, 431, 522
SsiI CCGC 1 cut(s) 450
SspI AATATT 1 cut(s) 409
SspMI CTAG 1 cut(s) 149
TaiI ACGT 1 cut(s) 479
TaqI TCGA 1 cut(s) 279
TasI AATT 4 cut(s) 66, 315, 431, 522
TfiI GAWTC 3 cut(s) 88, 191, 544
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 2 cut(s) 373, 599
Tsp45I GTSAC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 315
XceI RCATGY 1 cut(s) 232
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.