FvH4_3g23981
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0020126
Physical Location & Seq
Reverse (-)
17060988 .. 17062470
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23981.t1

Sequence Viewer

Length: 1089 bp
ATGATACTTTTCAGTTTCTGCCCTGCATTAGCTGGTATCAGAGCAGGTCAGGGACGTAGGGAAGCCCTGGATGGCGACCCTAACCCCTTGGAGGATGAACTGGAAGGTAATCCCGACAAAGAACAGGATGTTGACAACCCTTTTCATGAGGTTGCTGGAGATGGAGAACACCCAAATCGCAACGGTTTAGAAGAGCGGTTGGTTCGCGCCCTAGATTTCAGTGGTGGAGGAATTAAAATCGAAGTTTCTGATTTTTATGGCCAGATGCATGCAGAAGACTACATGGACTGGGAGGTTAGTTTGGAAAATTATTTTGAGTGGAAGCCTATGGCAGAGAGCAGAAAAGTGTTGTTTGTGAAGCTTAACTTGAAGAGTACTACACTTCAATGGTGGAAGAGAGTTGAAGAGCAGCGTACCAGGCAAGGGAAAAGATGCGCGACAATATGCCTTAATGGCAAAAAAAAGCTACAGCGTCGTGGAGTTAGGAGGCCTACTACTGGACGTTTTGATGGTGCTTGGCAAAGGAATTCAGCCACAGTTCGTGGGGTTCGCAGTGACCAAGTTGCTATCCCAACTCCTCAGCCAGGTGGTAAGAATGTCGTTGGTGTTGATAAGAATGAGAAAGGAAAGGAAGTTGCAAGGCTTGGCTATCAAAACACAGGTGCAGGAACTTCAAAGGTTGGGAATTCTTCCCAGGTTCGGTGTTTTACGTGTGGGGAGAAGGGACATACTTCTTATGCATGTCCACAGAGAAGGGTGAACTTAGCAGAGTTTGAAGGTGATGACTCAATTTTCCTTGGATCAGTTTATGATGAGTATGGCGATGAAGAGGAAAATATTGATCTTTTACCTGTAGAAGGACAGTCTTTGGTTCTGAGGCGAGTGATGACAGCACCAAAGGTGGAGGAAGAGGACTGGAGGTGGCGTAGCATATTTCGCACACGTGTCCTATGTGGGGGAAAGGTTTGCAACTTGATTCTTGATGGGGGTAGTACTGAAAATATCATCTCAAAGGAAGCAGTAGAGAAGTTAAAGCTGCCTTTGGAGAAACACCCCAACCCCTACAAAATTTTGGTTTCAAAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.69

Weight (kDa)

6.58

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020126)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23981 FvH4_4g10392
malus_domestica MD14G1073100.v1.1
pyrus_communis pycom01g01230
rosa_chinensis RchiOBHm_Chr7g0227361
rosa_roxburghii Rroxscaffold_6G00402460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 196
AccII CGCG 2 cut(s) 207, 437
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 3 cut(s) 526, 685, 1068
AcvI CACGTG 1 cut(s) 944
AfaI GTAC 3 cut(s) 376, 415, 994
AfiI CCNNNNNNNGG 7 cut(s) 91, 423, 497, 584, 699, 857, 955
AflIII ACRYGT 3 cut(s) 710, 941, 943
AgsI TTSAA 6 cut(s) 370, 386, 404, 675, 776, 1080
AjnI CCWGG 4 cut(s) 66, 416, 583, 693
AluBI AGCT 4 cut(s) 32, 361, 466, 1036
AluI AGCT 4 cut(s) 32, 361, 466, 1036
AlwI GGATC 1 cut(s) 808
AlwNI CAGNNNCTG 1 cut(s) 18
AoxI GGCC 2 cut(s) 259, 488
ApeKI GCWGC 2 cut(s) 409, 1036
ApoI RAATTY 3 cut(s) 526, 685, 1068
AspLEI GCGC 2 cut(s) 209, 437
AsuHPI GGTGA 2 cut(s) 769, 791
BalI TGGCCA 1 cut(s) 261
BbrPI CACGTG 1 cut(s) 944
BbsI GAAGAC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 421, 1023
BccI CCATC 4 cut(s) 65, 155, 503, 977
BciT130I CCWGG 4 cut(s) 68, 418, 585, 695
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 2 cut(s) 467, 852
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 1 cut(s) 453
BisI GCNGC 2 cut(s) 410, 1037
BlsI GCNGC 2 cut(s) 411, 1038
BmcAI AGTACT 2 cut(s) 376, 994
Bme1390I CCNGG 4 cut(s) 68, 418, 585, 695
BmrFI CCNGG 4 cut(s) 68, 418, 585, 695
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 255, 422
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 177, 937
Bpu10I CCTNAGC 1 cut(s) 579
BsaAI YACGTR 2 cut(s) 711, 944
BsaJI CCNNGG 4 cut(s) 66, 87, 693, 796
BsaXI ACNNNNNCTCC 2 cut(s) 910, 940
Bsc4I CCNNNNNNNGG 7 cut(s) 91, 423, 497, 584, 699, 857, 955
Bse1I ACTGG 4 cut(s) 105, 293, 502, 920
BseBI CCWGG 4 cut(s) 68, 418, 585, 695
BseDI CCNNGG 4 cut(s) 66, 87, 693, 796
BseGI GGATG 3 cut(s) 76, 100, 133
BseLI CCNNNNNNNGG 7 cut(s) 91, 423, 497, 584, 699, 857, 955
BseMII CTCAG 2 cut(s) 593, 866
BseNI ACTGG 4 cut(s) 105, 293, 502, 920
BseRI GAGGAG 1 cut(s) 567
BseXI GCAGC 2 cut(s) 421, 1023
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 2 cut(s) 207, 437
BshFI GGCC 2 cut(s) 261, 490
BslFI GGGAC 2 cut(s) 66, 738
BslI CCNNNNNNNGG 7 cut(s) 91, 423, 497, 584, 699, 857, 955
BsmFI GGGAC 2 cut(s) 66, 738
BsnI GGCC 2 cut(s) 261, 490
Bsp143I GATC 2 cut(s) 800, 841
BspACI CCGC 1 cut(s) 196
BspANI GGCC 2 cut(s) 261, 490
BspCNI CTCAG 2 cut(s) 592, 867
BspFNI CGCG 2 cut(s) 207, 437
BspHI TCATGA 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 808
BspQI GCTCTTC 2 cut(s) 186, 399
BsrBI CCGCTC 1 cut(s) 196
BsrI ACTGG 4 cut(s) 105, 293, 502, 920
BssECI CCNNGG 4 cut(s) 66, 87, 693, 796
BssMI GATC 2 cut(s) 800, 841
BssT1I CCWWGG 2 cut(s) 87, 796
Bst2UI CCWGG 4 cut(s) 68, 418, 585, 695
Bst4CI ACNGT 3 cut(s) 185, 538, 864
Bst6I CTCTTC 6 cut(s) 186, 365, 389, 399, 822, 903
BstBAI YACGTR 2 cut(s) 711, 944
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 579, 763, 875
BstENI CCTNNNNNAGG 2 cut(s) 582, 855
BstF5I GGATG 3 cut(s) 76, 100, 133
BstFNI CGCG 2 cut(s) 207, 437
BstHHI GCGC 2 cut(s) 209, 437
BstKTI GATC 2 cut(s) 803, 844
BstMBI GATC 2 cut(s) 800, 841
BstMWI GCNNNNNNNGC 3 cut(s) 418, 453, 936
BstNI CCWGG 4 cut(s) 68, 418, 585, 695
BstNSI RCATGY 2 cut(s) 272, 744
BstSCI CCNGG 4 cut(s) 66, 416, 583, 693
BstSFI CTRYAG 2 cut(s) 467, 852
BstUI CGCG 2 cut(s) 207, 437
BstV1I GCAGC 2 cut(s) 421, 1023
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 2 cut(s) 261, 490
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 3 cut(s) 76, 100, 133
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 226, 559
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 145
CfoI GCGC 2 cut(s) 209, 437
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 375, 414, 993
CviAII CATG 4 cut(s) 146, 269, 283, 741
CviQI GTAC 3 cut(s) 375, 414, 993
DdeI CTNAG 3 cut(s) 579, 763, 875
DpnI GATC 2 cut(s) 802, 843
DpnII GATC 2 cut(s) 800, 841
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 6 cut(s) 186, 365, 389, 399, 822, 903
EarI CTCTTC 6 cut(s) 186, 365, 389, 399, 822, 903
Eco130I CCWWGG 2 cut(s) 87, 796
Eco147I AGGCCT 1 cut(s) 490
Eco72I CACGTG 1 cut(s) 944
EcoNI CCTNNNNNAGG 2 cut(s) 582, 855
EcoRI GAATTC 2 cut(s) 526, 685
EcoRII CCWGG 4 cut(s) 66, 416, 583, 693
EcoT14I CCWWGG 2 cut(s) 87, 796
EcoT22I ATGCAT 2 cut(s) 270, 742
ErhI CCWWGG 2 cut(s) 87, 796
FaeI CATG 4 cut(s) 149, 272, 286, 744
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 2 cut(s) 66, 738
FatI CATG 4 cut(s) 145, 268, 282, 740
Fnu4HI GCNGC 2 cut(s) 410, 1037
FokI GGATG 3 cut(s) 83, 107, 140
Fsp4HI GCNGC 2 cut(s) 410, 1037
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 208, 436
GluI GCNGC 2 cut(s) 410, 1037
GsuI CTGGAG 2 cut(s) 177, 937
HaeIII GGCC 2 cut(s) 261, 490
HgaI GACGC 1 cut(s) 461
HhaI GCGC 2 cut(s) 209, 437
Hin1II CATG 4 cut(s) 149, 272, 286, 744
Hin6I GCGC 2 cut(s) 207, 435
HinP1I GCGC 2 cut(s) 207, 435
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 785, 976
HphI GGTGA 2 cut(s) 769, 791
Hpy166II GTNNAC 3 cut(s) 133, 746, 760
Hpy188I TCNGA 3 cut(s) 41, 250, 876
Hpy188III TCNNGA 3 cut(s) 113, 146, 980
Hpy8I GTNNAC 3 cut(s) 133, 746, 760
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 5 cut(s) 98, 715, 747, 770, 851
HpyCH4III ACNGT 3 cut(s) 185, 538, 864
HpyCH4IV ACGT 4 cut(s) 55, 502, 710, 943
HpyCH4V TGCA 7 cut(s) 26, 268, 272, 638, 665, 740, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 418, 453, 936
HpyF3I CTNAG 3 cut(s) 579, 763, 875
HpySE526I ACGT 4 cut(s) 55, 502, 710, 943
Hsp92II CATG 4 cut(s) 149, 272, 286, 744
HspAI GCGC 2 cut(s) 207, 435
Kzo9I GATC 2 cut(s) 800, 841
LguI GCTCTTC 2 cut(s) 186, 399
Lsp1109I GCAGC 2 cut(s) 421, 1023
LweI GCATC 2 cut(s) 255, 422
MaeI CTAG 1 cut(s) 212
MaeII ACGT 4 cut(s) 55, 502, 710, 943
MaeIII GTNAC 1 cut(s) 554
MalI GATC 2 cut(s) 802, 843
MbiI CCGCTC 1 cut(s) 196
MboI GATC 2 cut(s) 800, 841
MboII GAAGA 8 cut(s) 203, 287, 382, 406, 416, 681, 839, 920
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 6 cut(s) 231, 307, 526, 685, 789, 1068
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 1 cut(s) 779
Mox20I TGGCCA 1 cut(s) 261
Mph1103I ATGCAT 2 cut(s) 270, 742
MscI TGGCCA 1 cut(s) 261
MseI TTAA 4 cut(s) 234, 363, 450, 1031
MslI CAYNNNNRTG 1 cut(s) 385
Msp20I TGGCCA 1 cut(s) 261
MspR9I CCNGG 4 cut(s) 68, 418, 585, 695
MvaI CCWGG 4 cut(s) 68, 418, 585, 695
MvnI CGCG 2 cut(s) 207, 437
MwoI GCNNNNNNNGC 3 cut(s) 418, 453, 936
NdeII GATC 2 cut(s) 800, 841
NlaIII CATG 4 cut(s) 149, 272, 286, 744
NmuCI GTSAC 1 cut(s) 554
NsiI ATGCAT 2 cut(s) 270, 742
NspI RCATGY 2 cut(s) 272, 744
PaeI GCATGC 1 cut(s) 272
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 490
PciSI GCTCTTC 2 cut(s) 186, 399
PfeI GAWTC 1 cut(s) 976
PkrI GCNGC 2 cut(s) 411, 1038
PleI GAGTC 1 cut(s) 779
PmaCI CACGTG 1 cut(s) 944
PmlI CACGTG 1 cut(s) 944
PpsI GAGTC 1 cut(s) 779
Ppu21I YACGTR 2 cut(s) 711, 944
Psp6I CCWGG 4 cut(s) 66, 416, 583, 693
PspCI CACGTG 1 cut(s) 944
PspGI CCWGG 4 cut(s) 66, 416, 583, 693
PstNI CAGNNNCTG 1 cut(s) 18
RsaI GTAC 3 cut(s) 376, 415, 994
RsaNI GTAC 3 cut(s) 375, 414, 993
RseI CAYNNNNRTG 1 cut(s) 385
SapI GCTCTTC 2 cut(s) 186, 399
SaqAI TTAA 4 cut(s) 234, 363, 450, 1031
SatI GCNGC 2 cut(s) 410, 1037
Sau3AI GATC 2 cut(s) 800, 841
ScaI AGTACT 2 cut(s) 376, 994
SchI GAGTC 1 cut(s) 779
ScrFI CCNGG 4 cut(s) 68, 418, 585, 695
SfaNI GCATC 2 cut(s) 255, 422
SfcI CTRYAG 2 cut(s) 467, 852
SmiMI CAYNNNNRTG 1 cut(s) 385
SphI GCATGC 1 cut(s) 272
Sse9I AATT 6 cut(s) 231, 307, 526, 685, 789, 1068
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 1 cut(s) 196
SspI AATATT 1 cut(s) 838
SspMI CTAG 1 cut(s) 212
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 4 cut(s) 66, 416, 583, 693
StyI CCWWGG 2 cut(s) 87, 796
TaaI ACNGT 3 cut(s) 185, 538, 864
TaiI ACGT 4 cut(s) 58, 505, 713, 946
TaqI TCGA 1 cut(s) 240
TasI AATT 6 cut(s) 231, 307, 526, 685, 789, 1068
TatI WGTACW 2 cut(s) 374, 992
TfiI GAWTC 1 cut(s) 976
Tru1I TTAA 4 cut(s) 234, 363, 450, 1031
Tru9I TTAA 4 cut(s) 234, 363, 450, 1031
TscAI CASTG 2 cut(s) 226, 559
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 2 cut(s) 409, 1036
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 3 cut(s) 111, 134, 840
TspRI CASTG 2 cut(s) 226, 559
XagI CCTNNNNNAGG 2 cut(s) 582, 855
XapI RAATTY 3 cut(s) 526, 685, 1068
XceI RCATGY 2 cut(s) 272, 744
XspI CTAG 1 cut(s) 212
ZrmI AGTACT 2 cut(s) 376, 994
Zsp2I ATGCAT 2 cut(s) 270, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.