DNA RNA polymerases superfamily protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g23981 FvH4_4g10392 |
| malus_domestica | MD14G1073100.v1.1 |
| pyrus_communis | pycom01g01230 |
| rosa_chinensis | RchiOBHm_Chr7g0227361 |
| rosa_roxburghii | Rroxscaffold_6G00402460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 906 |
| AccI | GTMKAC | 1 cut(s) | 582 |
| AccIII | TCCGGA | 1 cut(s) | 319 |
| AciI | CCGC | 3 cut(s) | 81, 183, 1107 |
| AclI | AACGTT | 2 cut(s) | 71, 995 |
| AclWI | GGATC | 2 cut(s) | 438, 777 |
| AcsI | RAATTY | 6 cut(s) | 114, 279, 506, 758, 1038, 1241 |
| AflIII | ACRYGT | 1 cut(s) | 847 |
| AgsI | TTSAA | 4 cut(s) | 335, 474, 650, 1297 |
| AjnI | CCWGG | 3 cut(s) | 255, 857, 1217 |
| Alw26I | GTCTC | 3 cut(s) | 9, 666, 933 |
| AlwI | GGATC | 2 cut(s) | 438, 777 |
| Aor13HI | TCCGGA | 1 cut(s) | 319 |
| AoxI | GGCC | 2 cut(s) | 193, 1117 |
| ApeKI | GCWGC | 1 cut(s) | 416 |
| ApoI | RAATTY | 6 cut(s) | 114, 279, 506, 758, 1038, 1241 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 507, 573 |
| AsuHPI | GGTGA | 4 cut(s) | 44, 916, 968, 1154 |
| BanII | GRGCYC | 2 cut(s) | 211, 1135 |
| BbsI | GAAGAC | 1 cut(s) | 912 |
| BbvI | GCAGC | 1 cut(s) | 403 |
| BccI | CCATC | 6 cut(s) | 92, 382, 549, 760, 1016, 1344 |
| BciT130I | CCWGG | 3 cut(s) | 257, 859, 1219 |
| BcoDI | GTCTC | 3 cut(s) | 9, 666, 933 |
| BfaI | CTAG | 1 cut(s) | 879 |
| BfuAI | ACCTGC | 1 cut(s) | 906 |
| BisI | GCNGC | 1 cut(s) | 417 |
| BlsI | GCNGC | 1 cut(s) | 418 |
| Bme1390I | CCNGG | 3 cut(s) | 257, 859, 1219 |
| BmiI | GGNNCC | 3 cut(s) | 366, 615, 1328 |
| BmrFI | CCNGG | 3 cut(s) | 257, 859, 1219 |
| BmsI | GCATC | 2 cut(s) | 403, 511 |
| BpiI | GAAGAC | 1 cut(s) | 912 |
| BpuEI | CTTGAG | 1 cut(s) | 683 |
| BsaAI | YACGTR | 2 cut(s) | 215, 1139 |
| BsaWI | WCCGGW | 1 cut(s) | 319 |
| Bse3DI | GCAATG | 2 cut(s) | 33, 957 |
| BseAI | TCCGGA | 1 cut(s) | 319 |
| BseBI | CCWGG | 3 cut(s) | 257, 859, 1219 |
| BseGI | GGATG | 2 cut(s) | 418, 537 |
| BseMI | GCAATG | 2 cut(s) | 33, 957 |
| BseRI | GAGGAG | 1 cut(s) | 848 |
| BseXI | GCAGC | 1 cut(s) | 403 |
| BshFI | GGCC | 2 cut(s) | 195, 1119 |
| BsiSI | CCGG | 1 cut(s) | 320 |
| BsmAI | GTCTC | 3 cut(s) | 9, 666, 933 |
| BsmBI | CGTCTC | 1 cut(s) | 666 |
| BsmI | GAATGC | 2 cut(s) | 659, 814 |
| BsnI | GGCC | 2 cut(s) | 195, 1119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 211, 1135 |
| Bsp13I | TCCGGA | 1 cut(s) | 319 |
| Bsp143I | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| BspACI | CCGC | 3 cut(s) | 81, 183, 1107 |
| BspANI | GGCC | 2 cut(s) | 195, 1119 |
| BspEI | TCCGGA | 1 cut(s) | 319 |
| BspHI | TCATGA | 2 cut(s) | 544, 741 |
| BspLI | GGNNCC | 3 cut(s) | 366, 615, 1328 |
| BspMI | ACCTGC | 1 cut(s) | 906 |
| BspPI | GGATC | 2 cut(s) | 438, 777 |
| BsrDI | GCAATG | 2 cut(s) | 33, 957 |
| BssMI | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| Bst2UI | CCWGG | 3 cut(s) | 257, 859, 1219 |
| Bst4CI | ACNGT | 1 cut(s) | 789 |
| Bst6I | CTCTTC | 1 cut(s) | 549 |
| BstBAI | YACGTR | 2 cut(s) | 215, 1139 |
| BstC8I | GCNNGC | 2 cut(s) | 381, 1343 |
| BstDEI | CTNAG | 3 cut(s) | 384, 684, 1346 |
| BstF5I | GGATG | 2 cut(s) | 418, 537 |
| BstKTI | GATC | 5 cut(s) | 357, 433, 772, 843, 1319 |
| BstMAI | GTCTC | 3 cut(s) | 9, 666, 933 |
| BstMBI | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| BstNI | CCWGG | 3 cut(s) | 257, 859, 1219 |
| BstNSI | RCATGY | 1 cut(s) | 851 |
| BstSCI | CCNGG | 3 cut(s) | 255, 857, 1217 |
| BstV1I | GCAGC | 1 cut(s) | 403 |
| BstV2I | GAAGAC | 1 cut(s) | 912 |
| BsuRI | GGCC | 2 cut(s) | 195, 1119 |
| BtsCI | GGATG | 2 cut(s) | 418, 537 |
| BtsI | GCAGTG | 1 cut(s) | 1002 |
| BtsIMutI | CAGTG | 1 cut(s) | 1002 |
| BveI | ACCTGC | 1 cut(s) | 906 |
| Cac8I | GCNNGC | 2 cut(s) | 381, 1343 |
| CciI | TCATGA | 2 cut(s) | 544, 741 |
| DdeI | CTNAG | 3 cut(s) | 384, 684, 1346 |
| DpnI | GATC | 5 cut(s) | 356, 432, 771, 842, 1318 |
| DpnII | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| Eam1104I | CTCTTC | 1 cut(s) | 549 |
| EarI | CTCTTC | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 2 cut(s) | 211, 1135 |
| Eco32I | GATATC | 4 cut(s) | 52, 643, 909, 976 |
| EcoRII | CCWGG | 3 cut(s) | 255, 857, 1217 |
| EcoRV | GATATC | 4 cut(s) | 52, 643, 909, 976 |
| EcoT22I | ATGCAT | 1 cut(s) | 712 |
| EcoT38I | GRGCYC | 2 cut(s) | 211, 1135 |
| Esp3I | CGTCTC | 1 cut(s) | 666 |
| FauI | CCCGC | 2 cut(s) | 176, 1100 |
| FauNDI | CATATG | 1 cut(s) | 712 |
| FblI | GTMKAC | 1 cut(s) | 582 |
| Fnu4HI | GCNGC | 1 cut(s) | 417 |
| FokI | GGATG | 2 cut(s) | 425, 524 |
| FriOI | GRGCYC | 2 cut(s) | 211, 1135 |
| Fsp4HI | GCNGC | 1 cut(s) | 417 |
| FspBI | CTAG | 1 cut(s) | 879 |
| GluI | GCNGC | 1 cut(s) | 417 |
| HaeIII | GGCC | 2 cut(s) | 195, 1119 |
| HapII | CCGG | 1 cut(s) | 320 |
| HinfI | GANTC | 5 cut(s) | 345, 677, 720, 1166, 1307 |
| HpaII | CCGG | 1 cut(s) | 320 |
| HphI | GGTGA | 4 cut(s) | 44, 916, 968, 1154 |
| Hpy166II | GTNNAC | 4 cut(s) | 75, 583, 875, 999 |
| Hpy188III | TCNNGA | 6 cut(s) | 320, 545, 650, 662, 742, 1282 |
| Hpy8I | GTNNAC | 4 cut(s) | 75, 583, 875, 999 |
| Hpy99I | CGWCG | 1 cut(s) | 903 |
| HpyAV | CCTTC | 3 cut(s) | 182, 403, 1106 |
| HpyCH4III | ACNGT | 1 cut(s) | 789 |
| HpyCH4IV | ACGT | 5 cut(s) | 71, 214, 898, 995, 1138 |
| HpyCH4V | TGCA | 6 cut(s) | 229, 657, 710, 764, 814, 1191 |
| HpyF3I | CTNAG | 3 cut(s) | 384, 684, 1346 |
| HpySE526I | ACGT | 5 cut(s) | 71, 214, 898, 995, 1138 |
| Kpn2I | TCCGGA | 1 cut(s) | 319 |
| Kzo9I | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| LmnI | GCTCC | 1 cut(s) | 529 |
| Lsp1109I | GCAGC | 1 cut(s) | 403 |
| LweI | GCATC | 2 cut(s) | 403, 511 |
| MaeI | CTAG | 1 cut(s) | 879 |
| MaeII | ACGT | 5 cut(s) | 71, 214, 898, 995, 1138 |
| MaeIII | GTNAC | 2 cut(s) | 37, 961 |
| MalI | GATC | 5 cut(s) | 356, 432, 771, 842, 1318 |
| MboI | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| MfeI | CAATTG | 1 cut(s) | 434 |
| MhlI | GDGCHC | 2 cut(s) | 211, 1135 |
| MlyI | GAGTC | 2 cut(s) | 714, 1175 |
| MmeI | TCCRAC | 1 cut(s) | 916 |
| Mph1103I | ATGCAT | 1 cut(s) | 712 |
| MroI | TCCGGA | 1 cut(s) | 319 |
| MroXI | GAANNNNTTC | 2 cut(s) | 507, 573 |
| MseI | TTAA | 2 cut(s) | 561, 594 |
| MslI | CAYNNNNRTG | 1 cut(s) | 746 |
| MspI | CCGG | 1 cut(s) | 320 |
| MspR9I | CCNGG | 3 cut(s) | 257, 859, 1219 |
| MunI | CAATTG | 1 cut(s) | 434 |
| Mva1269I | GAATGC | 2 cut(s) | 659, 814 |
| MvaI | CCWGG | 3 cut(s) | 257, 859, 1219 |
| NdeI | CATATG | 1 cut(s) | 712 |
| NdeII | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| NlaIV | GGNNCC | 3 cut(s) | 366, 615, 1328 |
| NsiI | ATGCAT | 1 cut(s) | 712 |
| NspI | RCATGY | 1 cut(s) | 851 |
| PagI | TCATGA | 2 cut(s) | 544, 741 |
| PciI | ACATGT | 1 cut(s) | 847 |
| PctI | GAATGC | 2 cut(s) | 659, 814 |
| PdmI | GAANNNNTTC | 2 cut(s) | 507, 573 |
| PfeI | GAWTC | 3 cut(s) | 345, 677, 1307 |
| PflFI | GACNNNGTC | 1 cut(s) | 897 |
| PkrI | GCNGC | 1 cut(s) | 418 |
| PleI | GAGTC | 2 cut(s) | 714, 1174 |
| PpsI | GAGTC | 2 cut(s) | 714, 1174 |
| Ppu21I | YACGTR | 2 cut(s) | 215, 1139 |
| PscI | ACATGT | 1 cut(s) | 847 |
| Psp1406I | AACGTT | 2 cut(s) | 71, 995 |
| Psp6I | CCWGG | 3 cut(s) | 255, 857, 1217 |
| PspGI | CCWGG | 3 cut(s) | 255, 857, 1217 |
| PspN4I | GGNNCC | 3 cut(s) | 366, 615, 1328 |
| PsyI | GACNNNGTC | 1 cut(s) | 897 |
| RseI | CAYNNNNRTG | 1 cut(s) | 746 |
| SaqAI | TTAA | 2 cut(s) | 561, 594 |
| SatI | GCNGC | 1 cut(s) | 417 |
| Sau3AI | GATC | 5 cut(s) | 354, 430, 769, 840, 1316 |
| SchI | GAGTC | 2 cut(s) | 714, 1175 |
| ScrFI | CCNGG | 3 cut(s) | 257, 859, 1219 |
| SduI | GDGCHC | 2 cut(s) | 211, 1135 |
| SfaNI | GCATC | 2 cut(s) | 403, 511 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 746 |
| SmlI | CTYRAG | 1 cut(s) | 662 |
| SmoI | CTYRAG | 1 cut(s) | 662 |
| SsiI | CCGC | 3 cut(s) | 81, 183, 1107 |
| SspMI | CTAG | 1 cut(s) | 879 |
| StyD4I | CCNGG | 3 cut(s) | 255, 857, 1217 |
| TaaI | ACNGT | 1 cut(s) | 789 |
| TaiI | ACGT | 5 cut(s) | 74, 217, 901, 998, 1141 |
| TaqI | TCGA | 6 cut(s) | 54, 450, 501, 911, 978, 1175 |
| TfiI | GAWTC | 3 cut(s) | 345, 677, 1307 |
| Tru1I | TTAA | 2 cut(s) | 561, 594 |
| Tru9I | TTAA | 2 cut(s) | 561, 594 |
| TscAI | CASTG | 1 cut(s) | 1009 |
| TseI | GCWGC | 1 cut(s) | 416 |
| TspDTI | ATGAA | 9 cut(s) | 110, 504, 566, 582, 615, 730, 807, 1034, 1145 |
| TspRI | CASTG | 1 cut(s) | 1009 |
| Tth111I | GACNNNGTC | 1 cut(s) | 897 |
| XapI | RAATTY | 6 cut(s) | 114, 279, 506, 758, 1038, 1241 |
| XceI | RCATGY | 1 cut(s) | 851 |
| XmiI | GTMKAC | 1 cut(s) | 582 |
| XmnI | GAANNNNTTC | 2 cut(s) | 507, 573 |
| XspI | CTAG | 1 cut(s) | 879 |
| Zsp2I | ATGCAT | 1 cut(s) | 712 |