FvH4_4g10392

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
13995968 .. 13996590
623 bp
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UTR
Exon/CDS
Intron
FvH4_4g10392.t1

Sequence Viewer

Length: 336 bp
ATGGCAAAGCTGCCACGTTCGACAGCCGCTACGATCTCTCCCAATCCTCACCTCATACCCCAACACTGCAATCCCCCAAACGATCAAGGTATCCGATGTCATCCAGCCCCACATGGAGGCGACCAGTCCCTCCGACGATGGCGAATCACTCACCGCCGGACAAGGAAGAAGGAGGTTGGTGAGGCTGGAGCGATTGAGTTCAAGGGAACTAAGGGACCACTTGATGCATATATTTGGGTGGATAAGATGGAGAAAGCTTTTGAGAGTACTGAACTTCCAGAAGATAAGAAGGTGAAGATGGCGGTGACTTTTCTTAATGATTCAGCGTATCAATAG

Protein Analysis

112

Amino Acids

12.52

Weight (kDa)

9.43

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020126)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23981 FvH4_4g10392
malus_domestica MD14G1073100.v1.1
pyrus_communis pycom01g01230
rosa_chinensis RchiOBHm_Chr7g0227361
rosa_roxburghii Rroxscaffold_6G00402460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 27, 154, 302
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 2 cut(s) 10, 257
AluI AGCT 2 cut(s) 10, 257
ApeKI GCWGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 5 cut(s) 41, 143, 191, 304, 316
AvaII GGWCC 1 cut(s) 215
BccI CCATC 3 cut(s) 132, 241, 292
BciVI GTATCC 1 cut(s) 101
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 2 cut(s) 11, 27
BlsI GCNGC 2 cut(s) 12, 28
BmcAI AGTACT 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 2 cut(s) 112, 228
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 112, 228
Bsp143I GATC 2 cut(s) 33, 82
BspACI CCGC 3 cut(s) 27, 154, 302
BspLI GGNNCC 1 cut(s) 216
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 33, 82
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 2 cut(s) 36, 85
BstMBI GATC 2 cut(s) 33, 82
BsuI GTATCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 10, 26, 107, 185, 257
CviKI_1 RGCY 5 cut(s) 10, 26, 107, 185, 257
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 35, 84
DpnII GATC 2 cut(s) 33, 82
Eco47I GGWCC 1 cut(s) 215
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 1 cut(s) 116
FaiI YATR 4 cut(s) 56, 114, 229, 231
FaqI GGGAC 2 cut(s) 112, 228
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 11, 27
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 2 cut(s) 11, 27
GluI GCNGC 2 cut(s) 11, 27
GsuI CTGGAG 1 cut(s) 207
HapII CCGG 1 cut(s) 157
Hin1II CATG 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 144, 320
HpaII CCGG 1 cut(s) 157
HphI GGTGA 5 cut(s) 41, 143, 191, 304, 316
Hpy188I TCNGA 2 cut(s) 95, 134
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 163, 283
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 69, 227
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 2 cut(s) 33, 82
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 5 cut(s) 117, 137, 170, 171, 291
LweI GCATC 1 cut(s) 214
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 35, 84
MboI GATC 2 cut(s) 33, 82
MboII GAAGA 3 cut(s) 178, 293, 307
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 6 cut(s) 57, 62, 110, 140, 166, 175
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 157
NdeII GATC 2 cut(s) 33, 82
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 229
PfeI GAWTC 2 cut(s) 144, 320
PkrI GCNGC 2 cut(s) 12, 28
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 11, 27
Sau3AI GATC 2 cut(s) 33, 82
Sau96I GGNCC 1 cut(s) 215
ScaI AGTACT 1 cut(s) 268
SetI ASST 7 cut(s) 12, 19, 54, 91, 177, 259, 294
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 215
SsiI CCGC 3 cut(s) 27, 154, 302
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 20
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 144, 320
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 304
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.