Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017269

Physical Location & Seq

Genomic Coordinates Forward (+)

18348699 .. 18355581

Gene Structure 6883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25442.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGCTTCTCATCGAGGCTGGAAAATATGTGCTACTGTTACAGGCATTCTCTTAATCACCATCTTAGTGGTTCTAGTCGTTCTATTCCTCACAGTCTTCAAGCTCAAAGATCCTGACATTGTGGCAAGTCCGATCAACCTAGAAAGCTTTCATGTAATAGTTTTTCCGGTGATAAAATTTAATGTATCAATCGGAATTTTGATCACAGTGAAAAATCGCAACTATGGAAGCTTCAAGTATGACAATAGCACAGCTCATATCAGTTATCGTGGCAAAGTTATAGCTGAAGCTCCACTCGAAGAAGGTACGATTCCATCTCACAAGAATTACAACATCACGACTTCCATGGATATATTAGCAGACAAACTGGCATTTGATGCGAACTTTCAAAGAGACTTGACTACAGTTGGGGTAGTGAATTTTACTTCACACACTGTGGTGCATGGGAAGGGAAGCATGTTGAAGATCTTCCATAAAAAGGCCCTTAGTCATACCGATTGTAACATCTCTATCACTGTTGGATCTCAAACTGTCGATTCTGCATGCACAAGCTCAGTCAAGCTAAATAGTCCAATCAATTTCGATTTAATCTTGACAGTCGGTCAAGGCCGTGCTCTGGCACGCAGGGGGCTTTGGTTCATTGTTTTTACTGCTTTCTGGATTGGGTTCTTTGGAGTTCGATTTGGAAGACATGGAATCGGTTTCTCAATCTCAGAGAAGTCTGGTTTTTGTGATGGGGTTCCTCATCTCACAAGGCTTGATGCATCTGATCGAGTAGTGTATGGGCCGGAGGTATGGGTGCTCGAAGTTCGTGACCCATGGCGATTTCACCGGCGACAAGGGCCTTCGCGAGCAGAGCAACCAAAGGAAAGTAAACGAGAACGCAACGGTCCGAGGAACTTGAAAAGTAAAGGGTGCAAAGCTCCGAAGAGCTTGAAAAGTAAAAAGGGTGCTAAGGCGAGATGTTTTAGCATCGGTTTCAACTATGTTGAAGGTTGTATTGTGTTTATAGATTGTAGAGTGTCCTTAGACCAGATTCTCAAACTCTCTTATATAGAGGTGAATTCACTAGTTGTTGATAATGATTCGGGCCACATAGATTGGCGCAAAGCAAGTCAAAGAGTTGTAGAATTCTTCAACGGAGATGTAGCCGAGGTCAAGCAAGAGGCTGTCGTTGGAATAGAAGATCTAGTTGAGGTCGTCAACGAAATAGGAGGTTCGGTTGAGATATATAGCGAGGTCGTCGTCAATGAAATTGGAGACGCAGTTGAGGTCGATCTGACATCGTTGTCGAAGGCGAAGAAGAACCCCAACGATAATCTCCTGCCACTCTCAATTCGGAGTCTTTGTTGTTCAATTGGAGTCCATCGTCGCCTCTGCCGTCCAGATGCCATCGCCGCCCTATGCCTTGATCTCCTCTCTGGTCTTACCTTCGCCATCTACGTAACACAAAGAAAGCCGATCCCTGAGTTCAGAATGTGCAAGCCCGGTCCGGACAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

502

Amino Acids

55.5

Weight (kDa)

9.04

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25442
malus_domestica	MD10G1315700.v1.1
prunus_persica	Prupe.4G024900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0003841
rosa_laevigata	RLG00000031180
rosa_multiflora	Rmu_co8436285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072150
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG034600 Rh5BG033000 Rh5CG037000 Rh5DG033300
rosa_wichuraiana	Rw5G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1288
AccII	CGCG	1 cut(s)	850
AccIII	TCCGGA	1 cut(s)	1492
AciI	CCGC	1 cut(s)	1398
AclWI	GGATC	3 cut(s)	104, 529, 1456
AcsI	RAATTY	5 cut(s)	176, 195, 418, 1063, 1130
AcuI	CTGAAG	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	478, 616
AhdI	GACNNNNNGTC	1 cut(s)	600
AhlI	ACTAGT	1 cut(s)	1069
AleI	CACNNNNGTG	1 cut(s)	437
Alw21I	GWGCWC	2 cut(s)	616, 804
Alw26I	GTCTC	2 cut(s)	387, 1254
AlwI	GGATC	3 cut(s)	104, 529, 1456
Aor13HI	TCCGGA	1 cut(s)	1492
AoxI	GGCC	5 cut(s)	480, 607, 785, 842, 1090
ApoI	RAATTY	5 cut(s)	176, 195, 418, 1063, 1130
Asp700I	GAANNNNTTC	2 cut(s)	147, 467
AspLEI	GCGC	1 cut(s)	1107
AspS9I	GGNCC	6 cut(s)	481, 785, 842, 890, 1090, 1490
AsuC2I	CCSGG	1 cut(s)	1488
AsuHPI	GGTGA	4 cut(s)	49, 181, 821, 1072
AvaII	GGWCC	2 cut(s)	890, 1490
BbsI	GAAGAC	2 cut(s)	88, 694
Bbv12I	GWGCWC	2 cut(s)	616, 804
BccI	CCATC	6 cut(s)	68, 322, 728, 1374, 1400, 1445
BceAI	ACGGC	2 cut(s)	594, 1365
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	1488
BcoDI	GTCTC	2 cut(s)	387, 1254
BcuI	ACTAGT	1 cut(s)	1069
BfaI	CTAG	4 cut(s)	74, 140, 1070, 1190
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	2 cut(s)	465, 1186
BisI	GCNGC	1 cut(s)	1398
BlsI	GCNGC	1 cut(s)	1399
Bme1390I	CCNGG	1 cut(s)	1488
Bme18I	GGWCC	2 cut(s)	890, 1490
BmeRI	GACNNNNNGTC	1 cut(s)	600
BmgT120I	GGNCC	6 cut(s)	481, 785, 842, 890, 1090, 1490
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	1 cut(s)	1488
BmsI	GCATC	5 cut(s)	367, 751, 773, 981, 1378
BpiI	GAAGAC	2 cut(s)	88, 694
Bpu10I	CCTNAGC	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	1488
BsaAI	YACGTR	1 cut(s)	1444
BsaJI	CCNNGG	4 cut(s)	345, 818, 893, 1152
BsaWI	WCCGGW	2 cut(s)	166, 1492
BsaXI	ACNNNNNCTCC	6 cut(s)	1206, 1236, 1251, 1281, 1333, 1363
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 616
Bse118I	RCCGGY	1 cut(s)	831
Bse1I	ACTGG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	1492
BseDI	CCNNGG	4 cut(s)	345, 818, 893, 1152
BseLI	CCNNNNNNNGG	2 cut(s)	478, 616
BseMII	CTCAG	3 cut(s)	567, 726, 1458
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	1406
Bsh1236I	CGCG	1 cut(s)	850
BshFI	GGCC	5 cut(s)	482, 609, 787, 844, 1092
BsiHKAI	GWGCWC	2 cut(s)	616, 804
BsiSI	CCGG	5 cut(s)	167, 788, 832, 1488, 1493
BslI	CCNNNNNNNGG	2 cut(s)	478, 616
BsmAI	GTCTC	2 cut(s)	387, 1254
BsmBI	CGTCTC	1 cut(s)	1254
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	5 cut(s)	482, 609, 787, 844, 1092
Bsp1286I	GDGCHC	2 cut(s)	616, 804
Bsp13I	TCCGGA	1 cut(s)	1492
Bsp19I	CCATGG	2 cut(s)	345, 818
Bsp68I	TCGCGA	1 cut(s)	850
BspACI	CCGC	1 cut(s)	1398
BspANI	GGCC	5 cut(s)	482, 609, 787, 844, 1092
BspCNI	CTCAG	3 cut(s)	566, 725, 1459
BspEI	TCCGGA	1 cut(s)	1492
BspFNI	CGCG	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	741
BspPI	GGATC	3 cut(s)	104, 529, 1456
BspQI	GCTCTTC	1 cut(s)	923
BsrFI	RCCGGY	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	831
BssECI	CCNNGG	4 cut(s)	345, 818, 893, 1152
BssT1I	CCWWGG	2 cut(s)	345, 818
Bst4CI	ACNGT	9 cut(s)	37, 94, 208, 406, 436, 517, 532, 598, 890
Bst6I	CTCTTC	1 cut(s)	923
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	1444
BstC8I	GCNNGC	4 cut(s)	544, 622, 852, 1484
BstDEI	CTNAG	7 cut(s)	64, 485, 553, 712, 954, 1027, 1467
BstDSI	CCRYGG	2 cut(s)	345, 818
BstFNI	CGCG	1 cut(s)	850
BstHHI	GCGC	1 cut(s)	1107
BstMAI	GTCTC	2 cut(s)	387, 1254
BstMWI	GCNNNNNNNGC	4 cut(s)	377, 841, 856, 1397
BstNSI	RCATGY	2 cut(s)	460, 546
BstSCI	CCNGG	1 cut(s)	1486
BstSFI	CTRYAG	1 cut(s)	402
BstSNI	TACGTA	1 cut(s)	1444
BstUI	CGCG	1 cut(s)	850
BstV2I	GAAGAC	2 cut(s)	88, 694
BstX2I	RGATCY	4 cut(s)	109, 465, 521, 1186
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	4 cut(s)	109, 465, 521, 1186
BsuRI	GGCC	5 cut(s)	482, 609, 787, 844, 1092
BtgI	CCRYGG	2 cut(s)	345, 818
BtgZI	GCGATG	1 cut(s)	1378
BtsIMutI	CAGTG	3 cut(s)	213, 432, 513
BtuMI	TCGCGA	1 cut(s)	850
Cac8I	GCNNGC	4 cut(s)	544, 622, 852, 1484
CfoI	GCGC	1 cut(s)	1107
Cfr10I	RCCGGY	1 cut(s)	831
Cfr13I	GGNCC	6 cut(s)	481, 785, 842, 890, 1090, 1490
CpoI	CGGWCCG	2 cut(s)	890, 1490
CseI	GACGC	1 cut(s)	1271
Csp6I	GTAC	1 cut(s)	306
CspCI	CAANNNNNGTGG	2 cut(s)	1082, 1117
CspI	CGGWCCG	2 cut(s)	890, 1490
CviAII	CATG	7 cut(s)	152, 346, 443, 457, 543, 692, 819
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	7 cut(s)	64, 485, 553, 712, 954, 1027, 1467
DraIII	CACNNNGTG	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	1288
DriI	GACNNNNNGTC	1 cut(s)	600
DseDI	GACNNNNNNGTC	1 cut(s)	1288
Eam1104I	CTCTTC	1 cut(s)	923
Eam1105I	GACNNNNNGTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	923
Eco105I	TACGTA	1 cut(s)	1444
Eco130I	CCWWGG	2 cut(s)	345, 818
Eco47I	GGWCC	2 cut(s)	890, 1490
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	2 cut(s)	481, 842
EcoRI	GAATTC	2 cut(s)	1063, 1130
EcoT14I	CCWWGG	2 cut(s)	345, 818
EcoT22I	ATGCAT	1 cut(s)	766
ErhI	CCWWGG	2 cut(s)	345, 818
Esp3I	CGTCTC	1 cut(s)	1254
FaeI	CATG	7 cut(s)	155, 349, 446, 460, 546, 695, 822
FatI	CATG	7 cut(s)	151, 345, 442, 456, 542, 691, 818
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	1398
Fsp4HI	GCNGC	1 cut(s)	1398
FspBI	CTAG	4 cut(s)	74, 140, 1070, 1190
GlaI	GCGC	1 cut(s)	1106
GluI	GCNGC	1 cut(s)	1398
HaeIII	GGCC	5 cut(s)	482, 609, 787, 844, 1092
HapII	CCGG	5 cut(s)	167, 788, 832, 1488, 1493
HgaI	GACGC	1 cut(s)	1271
HhaI	GCGC	1 cut(s)	1107
Hin1II	CATG	7 cut(s)	155, 349, 446, 460, 546, 695, 822
Hin6I	GCGC	1 cut(s)	1105
HinP1I	GCGC	1 cut(s)	1105
HincII	GTYRAC	1 cut(s)	1204
HindII	GTYRAC	1 cut(s)	1204
HindIII	AAGCTT	2 cut(s)	145, 229
HinfI	GANTC	7 cut(s)	310, 536, 696, 1036, 1085, 1342, 1362
HpaII	CCGG	5 cut(s)	167, 788, 832, 1488, 1493
HphI	GGTGA	4 cut(s)	49, 181, 821, 1072
Hpy166II	GTNNAC	2 cut(s)	875, 1204
Hpy188I	TCNGA	9 cut(s)	132, 194, 715, 769, 894, 927, 1281, 1341, 1475
Hpy188III	TCNNGA	8 cut(s)	113, 337, 592, 658, 812, 849, 1385, 1493
Hpy8I	GTNNAC	2 cut(s)	875, 1204
Hpy99I	CGWCG	2 cut(s)	1247, 1374
HpyAV	CCTTC	6 cut(s)	296, 442, 855, 986, 1288, 1441
HpyCH4III	ACNGT	9 cut(s)	37, 94, 208, 406, 436, 517, 532, 598, 890
HpyCH4IV	ACGT	1 cut(s)	1443
HpyCH4V	TGCA	6 cut(s)	442, 542, 546, 764, 918, 1482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	377, 841, 856, 1397
HpyF3I	CTNAG	7 cut(s)	64, 485, 553, 712, 954, 1027, 1467
HpySE526I	ACGT	1 cut(s)	1443
Hsp92II	CATG	7 cut(s)	155, 349, 446, 460, 546, 695, 822
HspAI	GCGC	1 cut(s)	1105
Kpn2I	TCCGGA	1 cut(s)	1492
Ksp22I	TGATCA	1 cut(s)	201
LguI	GCTCTTC	1 cut(s)	923
LmnI	GCTCC	2 cut(s)	295, 928
LweI	GCATC	5 cut(s)	367, 751, 773, 981, 1378
MaeI	CTAG	4 cut(s)	74, 140, 1070, 1190
MaeII	ACGT	1 cut(s)	1443
MaeIII	GTNAC	4 cut(s)	37, 500, 812, 1444
MfeI	CAATTG	1 cut(s)	1356
MflI	RGATCY	4 cut(s)	109, 465, 521, 1186
MhlI	GDGCHC	2 cut(s)	616, 804
MlyI	GAGTC	2 cut(s)	1351, 1371
MmeI	TCCRAC	2 cut(s)	499, 1156
Mph1103I	ATGCAT	1 cut(s)	766
MroI	TCCGGA	1 cut(s)	1492
MroXI	GAANNNNTTC	2 cut(s)	147, 467
MseI	TTAA	3 cut(s)	53, 180, 587
MslI	CAYNNNNRTG	2 cut(s)	65, 437
MspI	CCGG	5 cut(s)	167, 788, 832, 1488, 1493
MspR9I	CCNGG	1 cut(s)	1488
MunI	CAATTG	1 cut(s)	1356
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	850
MwoI	GCNNNNNNNGC	4 cut(s)	377, 841, 856, 1397
NciI	CCSGG	1 cut(s)	1488
NcoI	CCATGG	2 cut(s)	345, 818
NlaIII	CATG	7 cut(s)	155, 349, 446, 460, 546, 695, 822
NlaIV	GGNNCC	1 cut(s)	741
NmeAIII	GCCGAG	1 cut(s)	1177
NmuCI	GTSAC	1 cut(s)	812
NruI	TCGCGA	1 cut(s)	850
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	460, 546
OliI	CACNNNNGTG	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	923
PcsI	WCGNNNNNNNCGW	2 cut(s)	1378, 1440
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	2 cut(s)	147, 467
PfeI	GAWTC	5 cut(s)	310, 536, 696, 1036, 1085
PkrI	GCNGC	1 cut(s)	1399
PleI	GAGTC	2 cut(s)	1350, 1370
PpsI	GAGTC	2 cut(s)	1350, 1370
Ppu21I	YACGTR	1 cut(s)	1444
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	6 cut(s)	481, 785, 842, 890, 1090, 1490
PsuI	RGATCY	4 cut(s)	109, 465, 521, 1186
RruI	TCGCGA	1 cut(s)	850
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
RseI	CAYNNNNRTG	2 cut(s)	65, 437
Rsr2I	CGGWCCG	2 cut(s)	890, 1490
RsrII	CGGWCCG	2 cut(s)	890, 1490
SapI	GCTCTTC	1 cut(s)	923
SaqAI	TTAA	3 cut(s)	53, 180, 587
SatI	GCNGC	1 cut(s)	1398
Sau96I	GGNCC	6 cut(s)	481, 785, 842, 890, 1090, 1490
SchI	GAGTC	2 cut(s)	1351, 1371
ScrFI	CCNGG	1 cut(s)	1488
SduI	GDGCHC	2 cut(s)	616, 804
SfaNI	GCATC	5 cut(s)	367, 751, 773, 981, 1378
SfcI	CTRYAG	1 cut(s)	402
SgrAI	CRCCGGYG	1 cut(s)	831
SinI	GGWCC	2 cut(s)	890, 1490
SmiMI	CAYNNNNRTG	2 cut(s)	65, 437
SnaBI	TACGTA	1 cut(s)	1444
SpeI	ACTAGT	1 cut(s)	1069
SphI	GCATGC	1 cut(s)	546
SsiI	CCGC	1 cut(s)	1398
SspMI	CTAG	4 cut(s)	74, 140, 1070, 1190
StyD4I	CCNGG	1 cut(s)	1486
StyI	CCWWGG	2 cut(s)	345, 818
TaaI	ACNGT	9 cut(s)	37, 94, 208, 406, 436, 517, 532, 598, 890
TaiI	ACGT	1 cut(s)	1446
TaqI	TCGA	9 cut(s)	13, 297, 534, 582, 679, 772, 804, 1275, 1292
TaqII	GACCGA	1 cut(s)	590
TauI	GCSGC	1 cut(s)	1400
TfiI	GAWTC	5 cut(s)	310, 536, 696, 1036, 1085
Tru1I	TTAA	3 cut(s)	53, 180, 587
Tru9I	TTAA	3 cut(s)	53, 180, 587
TscAI	CASTG	3 cut(s)	213, 439, 520
TseFI	GTSAC	1 cut(s)	812
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	3 cut(s)	140, 628, 1266
TspGWI	ACGGA	1 cut(s)	1155
TspRI	CASTG	3 cut(s)	213, 439, 520
VpaK11BI	GGWCC	2 cut(s)	890, 1490
XapI	RAATTY	5 cut(s)	176, 195, 418, 1063, 1130
XceI	RCATGY	2 cut(s)	460, 546
XmnI	GAANNNNTTC	2 cut(s)	147, 467
XspI	CTAG	4 cut(s)	74, 140, 1070, 1190
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.