Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017269

Physical Location & Seq

Genomic Coordinates Forward (+)

93283544 .. 93288255

Gene Structure 4712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTCTCACAGGGGCTGGAAAATCTGTGCTATTGTTACCGGCATTCTCTTCATCACCATCTTAGTGGTTTTAGTCGTTCTGTTCCTTACAGTCTTGAAGATCAAAGAACCTGACATTGTGGCGAGGCCGGTTAATCTAGAAAGCTATGAAGTGGTGGTCTTTCCGGCGATAAAGTTTAATGTATCAATCGGAATTTTGATCACAGTGAAAAATCGAAACTATGGAAGCTTCAAGTATGACAATAGCACAGCTCTTATCAGTTATCATGGCAAAGTTATCGCTGTAACTTCACTGAAAGATGGTACGATCCCATCTCACAGGAAGTATAACATCACGGCTTCTATGGATATATTAGCAGACAAACTGCTATTTGATCCAAACTTCCTAAGGGACTTGCGTGCCGGGGTACTCAATTTTACTTCACACACCACAGTGCATGGGAAGGGGAGCCTGTTGAAGATCTTTCATAAAAAGGCTACTAGTAAGACCGATTGTAACATCTCTATCATTGTCGGGGAATTCCCAGGACATAAAAAGACGGTGTCCTTAAGTCTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

187

Amino Acids

20.67

Weight (kDa)

9.78

Isoelectric Point (pI)

18.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	68 - 156	3.3e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25442
malus_domestica	MD10G1315700.v1.1
prunus_persica	Prupe.4G024900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0003841
rosa_laevigata	RLG00000031180
rosa_multiflora	Rmu_co8436285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072150
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG034600 Rh5BG033000 Rh5CG037000 Rh5DG033300
rosa_wichuraiana	Rw5G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	304, 371
AcsI	RAATTY	2 cut(s)	195, 521
AfaI	GTAC	2 cut(s)	307, 411
AflII	CTTAAG	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	100, 235, 460
AhlI	ACTAGT	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	526
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	147, 231, 254
AluI	AGCT	3 cut(s)	147, 231, 254
AlwI	GGATC	2 cut(s)	304, 371
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	195, 521
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	389
BccI	CCATC	3 cut(s)	68, 296, 322
BceAI	ACGGC	1 cut(s)	354
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	406
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	2 cut(s)	140, 483
BfrI	CTTAAG	1 cut(s)	550
BglII	AGATCT	1 cut(s)	462
Bme1390I	CCNGG	2 cut(s)	406, 528
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	406, 528
BpuMI	CCSGG	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	405, 526
Bse118I	RCCGGY	2 cut(s)	41, 130
Bse21I	CCTNAGG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	405, 526
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	4 cut(s)	42, 131, 167, 405
BslFI	GGGAC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	102, 201, 309, 376, 462
BspANI	GGCC	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	304, 371
BspTI	CTTAAG	1 cut(s)	550
BsrFI	RCCGGY	2 cut(s)	41, 130
BssAI	RCCGGY	2 cut(s)	41, 130
BssECI	CCNNGG	2 cut(s)	405, 526
BssMI	GATC	5 cut(s)	102, 201, 309, 376, 462
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	4 cut(s)	94, 208, 436, 544
Bst6I	CTCTTC	1 cut(s)	56
BstAFI	CTTAAG	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	64, 389
BstKTI	GATC	5 cut(s)	105, 204, 312, 379, 465
BstMBI	GATC	5 cut(s)	102, 201, 309, 376, 462
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	404, 526
BstX2I	RGATCY	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	213, 293, 441
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr10I	RCCGGY	2 cut(s)	41, 130
Csp6I	GTAC	2 cut(s)	306, 410
CviAII	CATG	2 cut(s)	269, 440
CviJI	RGCY	9 cut(s)	5, 18, 130, 147, 231, 254, 341, 453, 479
CviKI_1	RGCY	9 cut(s)	5, 18, 130, 147, 231, 254, 341, 453, 479
CviQI	GTAC	2 cut(s)	306, 410
DdeI	CTNAG	2 cut(s)	64, 389
DpnI	GATC	5 cut(s)	104, 203, 311, 378, 464
DpnII	GATC	5 cut(s)	102, 201, 309, 376, 462
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	526
FaeI	CATG	2 cut(s)	272, 443
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	268, 439
FbaI	TGATCA	1 cut(s)	201
FspBI	CTAG	2 cut(s)	140, 483
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	4 cut(s)	42, 131, 167, 405
Hin1II	CATG	2 cut(s)	272, 443
HindIII	AAGCTT	1 cut(s)	229
HpaII	CCGG	4 cut(s)	42, 131, 167, 405
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	2 cut(s)	97, 140
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	94, 208, 436, 544
HpyCH4V	TGCA	1 cut(s)	439
HpyF3I	CTNAG	2 cut(s)	64, 389
Hsp92II	CATG	2 cut(s)	272, 443
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	102, 201, 309, 376, 462
LmnI	GCTCC	1 cut(s)	450
MaeI	CTAG	2 cut(s)	140, 483
MaeIII	GTNAC	3 cut(s)	37, 286, 497
MalI	GATC	5 cut(s)	104, 203, 311, 378, 464
MboI	GATC	5 cut(s)	102, 201, 309, 376, 462
MboII	GAAGA	3 cut(s)	43, 112, 472
MflI	RGATCY	1 cut(s)	462
MluCI	AATT	3 cut(s)	195, 415, 521
MnlI	CCTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	135, 180, 551
MslI	CAYNNNNRTG	2 cut(s)	65, 434
MspCI	CTTAAG	1 cut(s)	550
MspI	CCGG	4 cut(s)	42, 131, 167, 405
MspR9I	CCNGG	2 cut(s)	406, 528
Mva1269I	GAATGC	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	528
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	102, 201, 309, 376, 462
NlaIII	CATG	2 cut(s)	272, 443
NlaIV	GGNNCC	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	434
PctI	GAATGC	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	462
PsyI	GACNNNGTC	1 cut(s)	544
RsaI	GTAC	2 cut(s)	307, 411
RsaNI	GTAC	2 cut(s)	306, 410
RseI	CAYNNNNRTG	2 cut(s)	65, 434
SaqAI	TTAA	3 cut(s)	135, 180, 551
Sau3AI	GATC	5 cut(s)	102, 201, 309, 376, 462
ScrFI	CCNGG	2 cut(s)	406, 528
SetI	ASST	4 cut(s)	115, 149, 233, 256
SmiMI	CAYNNNNRTG	2 cut(s)	65, 434
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SpeI	ACTAGT	1 cut(s)	482
Sse9I	AATT	3 cut(s)	195, 415, 521
SspMI	CTAG	2 cut(s)	140, 483
StyD4I	CCNGG	2 cut(s)	404, 526
TaaI	ACNGT	4 cut(s)	94, 208, 436, 544
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	3 cut(s)	195, 415, 521
Tru1I	TTAA	3 cut(s)	135, 180, 551
Tru9I	TTAA	3 cut(s)	135, 180, 551
TscAI	CASTG	3 cut(s)	213, 300, 441
TspDTI	ATGAA	3 cut(s)	43, 165, 458
TspRI	CASTG	3 cut(s)	213, 300, 441
Tth111I	GACNNNGTC	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	550
XapI	RAATTY	2 cut(s)	195, 521
XbaI	TCTAGA	1 cut(s)	139
XspI	CTAG	2 cut(s)	140, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.