Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017269

Physical Location & Seq

Genomic Coordinates Reverse (-)

2749246 .. 2749809

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTCTCACAGGGGCTGGAAAATCTGTGCTACTGTTACCGGCATTCTCTTCATCACCATCTTAGTGGTTTTAGTCGTTCTGTTCCTTACAATCTTGAAGATCAAAGAACCTGACATAGTGGCGAGGCCCGTTAATCTAGAAAGCTATGAAGTTGTGGTCTTTCCGGCAATAAAGTTTAATGTATCAGTCGGAATTTTGATCACAGTGAAAAATCGAAACTATGGAAGCTTCAAGTATGACAATAGCACAGCTCTTATCAGTTATCGTGGCAAAGTTATTGCGGTAACTCCACTGAAAGAAGGTACGATCCCATCTCATAAGAAGTATAACATCACGGCTTCTATGGATATATTAGGAGATAAATTGCTATTTGATTCAAACTTCCTAAGGGACTTGCGTGCCGGGGTACTCAATTTTACTTCACACACCACAGTGCATGGGAAGGGGAGCCTGTTGAAGATCTTTCATAAAAAGGCTACTAGTAAGACCGATTGTAACATCTCTATCATTGTTGCATCTCAGAGCATCGATTCCGGTTGCACAACCTCGATCAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

188

Amino Acids

20.56

Weight (kDa)

9.65

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	68 - 156	9.9e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25442
malus_domestica	MD10G1315700.v1.1
prunus_persica	Prupe.4G024900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0003841
rosa_laevigata	RLG00000031180
rosa_multiflora	Rmu_co8436285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072150
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG034600 Rh5BG033000 Rh5CG037000 Rh5DG033300
rosa_wichuraiana	Rw5G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	2 cut(s)	307, 411
AgsI	TTSAA	4 cut(s)	100, 235, 381, 460
AhlI	ACTAGT	1 cut(s)	482
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	147, 231, 254
AluI	AGCT	3 cut(s)	147, 231, 254
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	389
BccI	CCATC	2 cut(s)	68, 322
BceAI	ACGGC	1 cut(s)	354
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	406
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	2 cut(s)	140, 483
BglII	AGATCT	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	527, 537
BpuMI	CCSGG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	536
Bse118I	RCCGGY	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	389
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	531
BsiSI	CCGG	4 cut(s)	42, 167, 405, 537
BslFI	GGGAC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	102, 201, 309, 462, 552
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	535
BspDI	ATCGAT	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	5 cut(s)	102, 201, 309, 462, 552
Bst4CI	ACNGT	3 cut(s)	37, 208, 436
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	64, 389, 522
BstKTI	GATC	5 cut(s)	105, 204, 312, 465, 555
BstMBI	GATC	5 cut(s)	102, 201, 309, 462, 552
BstSCI	CCNGG	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	462
Bsu15I	ATCGAT	1 cut(s)	531
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	213, 293, 441
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	306, 410
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	9 cut(s)	5, 18, 130, 147, 231, 254, 341, 453, 479
CviKI_1	RGCY	9 cut(s)	5, 18, 130, 147, 231, 254, 341, 453, 479
CviQI	GTAC	2 cut(s)	306, 410
DdeI	CTNAG	3 cut(s)	64, 389, 522
DpnI	GATC	5 cut(s)	104, 203, 311, 464, 554
DpnII	GATC	5 cut(s)	102, 201, 309, 462, 552
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	389
FaeI	CATG	1 cut(s)	443
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	201
FspBI	CTAG	2 cut(s)	140, 483
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	4 cut(s)	42, 167, 405, 537
Hin1II	CATG	1 cut(s)	443
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	2 cut(s)	377, 533
HpaII	CCGG	4 cut(s)	42, 167, 405, 537
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	194, 525
Hpy188III	TCNNGA	2 cut(s)	97, 140
HpyAV	CCTTC	2 cut(s)	296, 439
HpyCH4III	ACNGT	3 cut(s)	37, 208, 436
HpyCH4V	TGCA	3 cut(s)	439, 518, 543
HpyF3I	CTNAG	3 cut(s)	64, 389, 522
Hsp92II	CATG	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	102, 201, 309, 462, 552
LmnI	GCTCC	1 cut(s)	450
LpnPI	CCDG	7 cut(s)	4, 55, 126, 180, 418, 467, 550
LweI	GCATC	2 cut(s)	527, 537
MaeI	CTAG	2 cut(s)	140, 483
MaeIII	GTNAC	3 cut(s)	37, 286, 497
MalI	GATC	5 cut(s)	104, 203, 311, 464, 554
MboI	GATC	5 cut(s)	102, 201, 309, 462, 552
MboII	GAAGA	3 cut(s)	43, 112, 472
MflI	RGATCY	1 cut(s)	462
MluCI	AATT	4 cut(s)	195, 365, 415, 556
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	120, 559
MseI	TTAA	2 cut(s)	135, 180
MslI	CAYNNNNRTG	2 cut(s)	65, 434
MspI	CCGG	4 cut(s)	42, 167, 405, 537
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	102, 201, 309, 462, 552
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	434
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	377, 533
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	2 cut(s)	307, 411
RsaNI	GTAC	2 cut(s)	306, 410
RseI	CAYNNNNRTG	2 cut(s)	65, 434
SaqAI	TTAA	2 cut(s)	135, 180
Sau3AI	GATC	5 cut(s)	102, 201, 309, 462, 552
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	406
SetI	ASST	6 cut(s)	115, 149, 233, 256, 307, 551
SfaNI	GCATC	2 cut(s)	527, 537
SmiMI	CAYNNNNRTG	2 cut(s)	65, 434
SpeI	ACTAGT	1 cut(s)	482
Sse9I	AATT	4 cut(s)	195, 365, 415, 556
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	140, 483
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	3 cut(s)	37, 208, 436
TaqI	TCGA	3 cut(s)	217, 531, 551
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	4 cut(s)	195, 365, 415, 556
TfiI	GAWTC	2 cut(s)	377, 533
Tru1I	TTAA	2 cut(s)	135, 180
Tru9I	TTAA	2 cut(s)	135, 180
TscAI	CASTG	3 cut(s)	213, 300, 441
TspDTI	ATGAA	3 cut(s)	43, 165, 458
TspRI	CASTG	3 cut(s)	213, 300, 441
XapI	RAATTY	1 cut(s)	195
XbaI	TCTAGA	1 cut(s)	139
XspI	CTAG	2 cut(s)	140, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.