Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8436285.1

Orthogroup ID

OG0017269

Physical Location & Seq

Genomic Coordinates Reverse (-)

799 .. 1362

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8436285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggcttctcacaggggctggaaaatctgtgctacggttaccggcattctcttcatcaccatcttagtggttttagtcgttctgttccttacggtcttgaagatcaaagaacctgacattgtggcgaggccggttaatctagaaagctatgaagtggtggtctctccggcgataaagtttaatgtatcagtcggaattttgatcacagtgaaaaatcgaaactatggaagcttcaagtatgacaatagcacagctcttatcagttatcgtggcaaagttatcgctgtaactccactgaaagatggtacgatcccatctcacaggaagtatgacatcaccgcttctatggatatattagcagacaaactgctattggattcaaacttcctaagagacttgcttgccggggtactcaattttacttcacacaccacagtgcatgggaaggggagcttgttgaagatctttcataaaaaggctactagtaagaccgattgtaacatctctatcattgttgcatctcagagcgtcgattccgcttgcacaacctcgatcaatttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

187

Amino Acids

20.44

Weight (kDa)

9.49

Isoelectric Point (pI)

22.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25442
malus_domestica	MD10G1315700.v1.1
prunus_persica	Prupe.4G024900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0003841
rosa_laevigata	RLG00000031180
rosa_multiflora	Rmu_co8436285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072150
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG034600 Rh5BG033000 Rh5CG037000 Rh5DG033300
rosa_wichuraiana	Rw5G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	339, 537
AclWI	GGATC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	2 cut(s)	307, 411
AgsI	TTSAA	4 cut(s)	100, 235, 381, 460
AhlI	ACTAGT	1 cut(s)	482
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	147, 231, 254, 453
AluI	AGCT	4 cut(s)	147, 231, 254, 453
Alw26I	GTCTC	2 cut(s)	166, 387
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	49, 328
BccI	CCATC	3 cut(s)	68, 296, 322
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	166, 387
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	2 cut(s)	140, 483
BglII	AGATCT	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	405
Bse118I	RCCGGY	2 cut(s)	41, 130
BseDI	CCNNGG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	4 cut(s)	42, 131, 167, 405
BsmAI	GTCTC	2 cut(s)	166, 387
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	102, 201, 309, 462, 552
BspACI	CCGC	2 cut(s)	339, 537
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	535
BspPI	GGATC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	166
BsrFI	RCCGGY	2 cut(s)	41, 130
BssAI	RCCGGY	2 cut(s)	41, 130
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	5 cut(s)	102, 201, 309, 462, 552
Bst4CI	ACNGT	4 cut(s)	37, 94, 208, 436
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	402, 541
BstDEI	CTNAG	3 cut(s)	64, 389, 522
BstEII	GGTNACC	1 cut(s)	37
BstKTI	GATC	5 cut(s)	105, 204, 312, 465, 555
BstMAI	GTCTC	2 cut(s)	166, 387
BstMBI	GATC	5 cut(s)	102, 201, 309, 462, 552
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	213, 293, 441
Cac8I	GCNNGC	2 cut(s)	402, 541
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr10I	RCCGGY	2 cut(s)	41, 130
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	306, 410
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	8 cut(s)	5, 18, 130, 147, 231, 254, 453, 479
CviKI_1	RGCY	8 cut(s)	5, 18, 130, 147, 231, 254, 453, 479
CviQI	GTAC	2 cut(s)	306, 410
DdeI	CTNAG	3 cut(s)	64, 389, 522
DpnI	GATC	5 cut(s)	104, 203, 311, 464, 554
DpnII	GATC	5 cut(s)	102, 201, 309, 462, 552
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
FaeI	CATG	1 cut(s)	443
FaiI	YATR	8 cut(s)	150, 225, 240, 330, 347, 353, 441, 471
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	201
FspBI	CTAG	2 cut(s)	140, 483
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	4 cut(s)	42, 131, 167, 405
HgaI	GACGC	1 cut(s)	517
Hin1II	CATG	1 cut(s)	443
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	2 cut(s)	377, 533
HpaII	CCGG	4 cut(s)	42, 131, 167, 405
HphI	GGTGA	2 cut(s)	49, 328
Hpy188I	TCNGA	2 cut(s)	194, 525
Hpy188III	TCNNGA	2 cut(s)	97, 140
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	37, 94, 208, 436
HpyCH4V	TGCA	3 cut(s)	439, 518, 543
HpyF3I	CTNAG	3 cut(s)	64, 389, 522
Hsp92II	CATG	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	102, 201, 309, 462, 552
LmnI	GCTCC	1 cut(s)	450
LpnPI	CCDG	7 cut(s)	4, 55, 126, 144, 180, 307, 418
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	2 cut(s)	140, 483
MaeIII	GTNAC	3 cut(s)	37, 286, 497
MalI	GATC	5 cut(s)	104, 203, 311, 464, 554
MboI	GATC	5 cut(s)	102, 201, 309, 462, 552
MboII	GAAGA	3 cut(s)	43, 112, 472
MflI	RGATCY	1 cut(s)	462
MluCI	AATT	3 cut(s)	195, 415, 556
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	120, 559
MseI	TTAA	2 cut(s)	135, 180
MslI	CAYNNNNRTG	2 cut(s)	65, 434
MspI	CCGG	4 cut(s)	42, 131, 167, 405
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	102, 201, 309, 462, 552
NlaIII	CATG	1 cut(s)	443
OliI	CACNNNNGTG	1 cut(s)	434
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	377, 533
PspEI	GGTNACC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	2 cut(s)	307, 411
RsaNI	GTAC	2 cut(s)	306, 410
RseI	CAYNNNNRTG	2 cut(s)	65, 434
SaqAI	TTAA	2 cut(s)	135, 180
Sau3AI	GATC	5 cut(s)	102, 201, 309, 462, 552
ScrFI	CCNGG	1 cut(s)	406
SetI	ASST	6 cut(s)	115, 149, 233, 256, 455, 551
SfaNI	GCATC	1 cut(s)	527
SmiMI	CAYNNNNRTG	2 cut(s)	65, 434
SpeI	ACTAGT	1 cut(s)	482
Sse9I	AATT	3 cut(s)	195, 415, 556
SsiI	CCGC	2 cut(s)	339, 537
SspMI	CTAG	2 cut(s)	140, 483
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	4 cut(s)	37, 94, 208, 436
TaqI	TCGA	3 cut(s)	217, 531, 551
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	3 cut(s)	195, 415, 556
TfiI	GAWTC	2 cut(s)	377, 533
Tru1I	TTAA	2 cut(s)	135, 180
Tru9I	TTAA	2 cut(s)	135, 180
TscAI	CASTG	3 cut(s)	213, 300, 441
TspDTI	ATGAA	3 cut(s)	43, 165, 458
TspRI	CASTG	3 cut(s)	213, 300, 441
XapI	RAATTY	1 cut(s)	195
XbaI	TCTAGA	1 cut(s)	139
XspI	CTAG	2 cut(s)	140, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.