MD10G1315700.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0017269
Physical Location & Seq
Forward (+)
39925561 .. 39926136
576 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1315700.v1.1.491

Sequence Viewer

Length: 576 bp
ATGGAAGCAGGCTCTCGAAAATGCTTGAAAATCTTTGCTGCTGTCACTGGCATTTTCTTTATCATCACCTTAGTTGTTCTAGTCGTTCTATTCGTCACAATTTTAAAACCCAAAGATCCTTCGGTTTTCACCGAGCCGGTAAGCCTAGAGGGATTTGAGTTTGTAGGTTTCCCAGTTATAAAGTTAAATATATCGATAAGAATATTGGTCACGGTGAAAAATCCAAATTATGGAGGCTTCAAGTATGAGAATAGTACAGCTCATATCAGCTACCATGGGAATGTTGTCGCCGAAGCTCCGATCAAGGACGACACAGTTCCGGCTCGTTCGACTCACAACATGACCACTGTTTTGAGTATTTTGGCTGACAAATTGGTAACTGATTCGCATTTCTTGGGTGAATTGGTCGTTGGGGTGCTGAATTTTACTTCAGAAACTACCCTGCACGGCAAGGTGAACTTGTGGAAGATCTTTAAGATGAAGGCAACCAGTTATACCGATTGCAACATTTCTATCACCATTGGAACCCAGAGTGCCGACTCCGTTTGCAAATCTAGGGTAAAGCTCAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

192

Amino Acids

20.95

Weight (kDa)

9.12

Isoelectric Point (pI)

27.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 70 - 161 1.5e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25442
malus_domestica MD10G1315700.v1.1
prunus_persica Prupe.4G024900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0003841
rosa_laevigata RLG00000031180
rosa_multiflora Rmu_co8436285.1_g000001
rosa_roxburghii Rroxscaffold_1G00072150
rosa_rugosa Rorug04G0407500
rosa_samantha Rh5AG034600 Rh5BG033000 Rh5CG037000 Rh5DG033300
rosa_wichuraiana Rw5G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 230
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 28, 241
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 4 cut(s) 260, 270, 296, 565
AluI AGCT 4 cut(s) 260, 270, 296, 565
AlwI GGATC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 421
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AsuHPI GGTGA 6 cut(s) 58, 121, 226, 410, 466, 508
BbvI GCAGC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 463
BfaI CTAG 3 cut(s) 80, 146, 555
BglII AGATCT 1 cut(s) 468
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 526
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 3 cut(s) 52, 173, 489
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 230
BseNI ACTGG 3 cut(s) 52, 173, 489
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 194
BsiSI CCGG 2 cut(s) 137, 320
BslI CCNNNNNNNGG 1 cut(s) 230
Bsp143I GATC 3 cut(s) 115, 300, 468
Bsp19I CCATGG 1 cut(s) 274
BspDI ATCGAT 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 3 cut(s) 52, 173, 489
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 3 cut(s) 115, 300, 468
BssT1I CCWWGG 1 cut(s) 274
Bst4CI ACNGT 3 cut(s) 214, 316, 349
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 274
BstKTI GATC 3 cut(s) 118, 303, 471
BstMBI GATC 3 cut(s) 115, 300, 468
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 115, 468
BstYI RGATCY 2 cut(s) 115, 468
Bsu15I ATCGAT 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 45, 345
Cac8I GCNNGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 194
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 275, 340
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 70
DpnI GATC 3 cut(s) 117, 302, 470
DpnII GATC 3 cut(s) 115, 300, 468
DraI TTTAAA 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 278, 343
FaiI YATR 8 cut(s) 179, 191, 231, 246, 264, 276, 341, 495
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FatI CATG 2 cut(s) 274, 339
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 80, 146, 555
GluI GCNGC 1 cut(s) 39
HapII CCGG 2 cut(s) 137, 320
Hin1II CATG 2 cut(s) 278, 343
HinfI GANTC 3 cut(s) 331, 383, 539
HpaII CCGG 2 cut(s) 137, 320
HphI GGTGA 6 cut(s) 58, 121, 226, 410, 466, 508
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 300, 433
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 2 cut(s) 129, 475
HpyCH4III ACNGT 3 cut(s) 214, 316, 349
HpyCH4V TGCA 3 cut(s) 445, 504, 549
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 2 cut(s) 278, 343
Kzo9I GATC 3 cut(s) 115, 300, 468
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 7 cut(s) 33, 150, 186, 333, 455, 502, 542
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 3 cut(s) 80, 146, 555
MaeIII GTNAC 4 cut(s) 43, 94, 208, 376
MalI GATC 3 cut(s) 117, 302, 470
MboI GATC 3 cut(s) 115, 300, 468
MboII GAAGA 1 cut(s) 478
MflI RGATCY 2 cut(s) 115, 468
MluCI AATT 5 cut(s) 99, 226, 371, 401, 421
MlyI GAGTC 2 cut(s) 325, 533
MnlI CCTC 2 cut(s) 142, 227
MseI TTAA 3 cut(s) 104, 185, 474
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 137, 320
NcoI CCATGG 1 cut(s) 274
NdeII GATC 3 cut(s) 115, 300, 468
NlaIII CATG 2 cut(s) 278, 343
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 3 cut(s) 43, 94, 208
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 2 cut(s) 325, 533
PpsI GAGTC 2 cut(s) 325, 533
PsiI TTATAA 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 526
PsuI RGATCY 2 cut(s) 115, 468
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 3 cut(s) 104, 185, 474
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 115, 300, 468
SchI GAGTC 2 cut(s) 325, 533
SetI ASST 7 cut(s) 71, 169, 262, 272, 298, 456, 567
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 5 cut(s) 99, 226, 371, 401, 421
SspI AATATT 1 cut(s) 204
SspMI CTAG 3 cut(s) 80, 146, 555
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 214, 316, 349
TaqI TCGA 3 cut(s) 16, 194, 329
TasI AATT 5 cut(s) 99, 226, 371, 401, 421
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 104, 185, 474
Tru9I TTAA 3 cut(s) 104, 185, 474
TscAI CASTG 2 cut(s) 52, 352
TseFI GTSAC 3 cut(s) 43, 94, 208
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 3 cut(s) 43, 94, 208
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 2 cut(s) 52, 352
Van91I CCANNNNNTGG 1 cut(s) 230
XapI RAATTY 1 cut(s) 421
XspI CTAG 3 cut(s) 80, 146, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.