FvH4_3g34260

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014929
Physical Location & Seq
Reverse (-)
29729956 .. 29733169
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34260.t1

Sequence Viewer

Length: 1554 bp
ATGGGAGGCAGCGGCTACAAGTTTGAAGATTCCGATAAGAAATCGTCGCATACCGGCTCCCATATGATAGGTTTCAGAGCCACCATCACTTGGGTTTTCCTCATAGTGTCAATGCTTTATGTTCTTTATTCTTCCAACCACCTCCTGAACTCTCAAGATTGTGCTACCCCTGTAAATATTAAAAATCATCTTCAGATCGTCACAAATGTCACTGGCAGTAATGATGTTAGTAAACTTGAGGTACAAGGCAAACAAGGACTAGGGCAAGGAGCCAAAGAAGTAGTACCTTCACGTCCACAACAATTTTCTAGATTTGATACAGAATTGAAACACATTGTGTTTGGGATTGCAGCCTCGTCAAATTTGTGGGAAAAGAGGAAGGAATACATAAAACTGTGGTGGAAGAAGGAGATGAGAGGGGTGGTATGGTTGGACAAAAAGGTGAGGATGCGGGGAAATGAGGTGTTACCTGAGATTCGAATCTCTGGGGACACCAGAGGATTCAAGTACACAAATCGGCAAGGGCAGAGATCAGCATTGAGGATTTCGAGGGTGGTTTCAGAAACATTGAGGCTTGGAATGAAGGATGTGAGATGGTTTGTGATGGGGGATGATGACACAGTTTTCGTGGTGGAAAATGTGTTGAGGATTCTTTCAAAATATGATCATAACCAGTTTTATTATATAGGACACCCATCAGAGAGTCACATTCAGAACATATTTTTCTCGTATACTATGGCCTTTGGGGGAGGTGGATTCGCCATAAGTTATCCATTGGCAGTGGAACTAGAGAAGATGCAGGACCGGTGCATCCAACGATATCCGGCATTATATGGCAGTGATGATAGAATGCAGGCTTGTATGGCGGAGCTAGGAGTCCCTCTTACCAAGGAAGCTGGATTTCATCAGTATGATGTGTATGGAAACCTAGTAGGCCTTCTGAGTGCCCATCCTGTGGCTCCATTGGTGACTCTTCACCACCTTGATGTAGTTGAGCCGGTATTCCCACGCATGAGCCGTGTTAAAGCACTTCAACATCTATTCCAGTCTGTAGAGTTCGACTCGGCTAGTATCATGCAACAATCAATCTGCTATGACAAAGATCATTTATGGTCCATCTCCATTTCATGGGGCTATGTAGTTCAAGTCATCAGGGGAGTAATGTCTCCAAGAGAACTAGAGACACCCTCAAGAACCTTTCTTAATTGGTACAGAAAAGGTGATTTCACATCATATTCATTTAACACTAGGCCTGTGTACAGAGACCCTTGTCAGAAACCCTTCCTTTTCTATTTGACCACGAATCGCCTTCATCGAGACAAAAATAAAGTATTTGGTTTCTATAAGCTAGAGAGATCTCCATCTCCTCATTGCCGTTGGAAAATGGCCTCCCCAGACACAATTGATACCATCATTGTCTTGAAAAGGCCAGATCCTATTCGTTGGGAAAAGTCACCAAGGAGAGACTGCTGTAGAATTCTTCCATCAAAAAAGAATTCGACGATGTTTCTATGGGTTGACAATTGTCGAGAAGGTGAGATGAGTGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

518

Amino Acids

59.76

Weight (kDa)

9.31

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 107 - 303 2.3e-17 Fringe-like
DUF604 PF04646 238 - 491 6.3e-115 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07850
fragaria_vesca FvH4_3g34260
malus_domestica MD03G1107200.v1.1 MD11G1119800.v1.1
prunus_persica Prupe.6G089900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0061811
rosa_laevigata RLG00000035508
rosa_multiflora Rmu_sc0004134.1_g000009
rosa_roxburghii Rroxscaffold_1G00018920
rosa_rugosa Rorug05G0344100 Rorug05G0344200
rosa_samantha Rh5AG405000 Rh5BG418000 Rh5CG442500 Rh5DG432100
rosa_wichuraiana Rw5G038040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 90, 955, 1128
AccI GTMKAC 1 cut(s) 731
AciI CCGC 3 cut(s) 12, 451, 866
AclWI GGATC 1 cut(s) 1427
AcsI RAATTY 3 cut(s) 361, 1476, 1495
AcuI CTGAAG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 5 cut(s) 243, 285, 509, 1211, 1259
AfiI CCNNNNNNNGG 3 cut(s) 90, 955, 1128
AgeI ACCGGT 1 cut(s) 804
AgsI TTSAA 7 cut(s) 26, 328, 505, 657, 1034, 1145, 1423
AjiI CACGTC 1 cut(s) 293
AluBI AGCT 3 cut(s) 871, 896, 1348
AluI AGCT 3 cut(s) 871, 896, 1348
Alw26I GTCTC 5 cut(s) 1170, 1175, 1257, 1311, 1458
AlwI GGATC 1 cut(s) 1427
AoxI GGCC 5 cut(s) 738, 934, 1250, 1386, 1427
ApeKI GCWGC 2 cut(s) 9, 350
ApoI RAATTY 3 cut(s) 361, 1476, 1495
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AsiGI ACCGGT 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 1280
AspS9I GGNCC 2 cut(s) 802, 1113
AsuHPI GGTGA 6 cut(s) 454, 968, 979, 1232, 1446, 1547
AsuII TTCGAA 1 cut(s) 478
AvaII GGWCC 2 cut(s) 802, 1113
BaeGI GKGCMC 1 cut(s) 949
BbvI GCAGC 2 cut(s) 21, 362
BccI CCATC 9 cut(s) 92, 588, 598, 703, 957, 1124, 1369, 1418, 1492
BceAI ACGGC 2 cut(s) 1002, 1359
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 5 cut(s) 1170, 1175, 1257, 1311, 1458
BfaI CTAG 9 cut(s) 260, 309, 788, 872, 929, 1068, 1178, 1248, 1349
BfmI CTRYAG 2 cut(s) 1050, 1471
BglII AGATCT 1 cut(s) 1355
BisI GCNGC 3 cut(s) 10, 13, 351
BlsI GCNGC 3 cut(s) 11, 14, 352
Bme18I GGWCC 2 cut(s) 802, 1113
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 802, 1113
BmiI GGNNCC 3 cut(s) 58, 271, 960
BmsI GCATC 3 cut(s) 438, 786, 819
BoxI GACNNNNGTC 2 cut(s) 1269, 1524
BplI GAGNNNNNCTC 4 cut(s) 1046, 1078, 1172, 1204
Bpu14I TTCGAA 1 cut(s) 478
BpuEI CTTGAG 3 cut(s) 138, 257, 1174
BsaBI GATNNNNATC 2 cut(s) 479, 1360
BsaI GGTCTC 1 cut(s) 1257
BsaJI CCNNGG 2 cut(s) 888, 1457
BsaWI WCCGGW 1 cut(s) 804
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 955, 1128
Bse118I RCCGGY 3 cut(s) 53, 804, 997
Bse1I ACTGG 3 cut(s) 217, 673, 1045
Bse3DI GCAATG 1 cut(s) 1369
Bse8I GATNNNNATC 2 cut(s) 479, 1360
BseDI CCNNGG 2 cut(s) 888, 1457
BseGI GGATG 5 cut(s) 453, 592, 616, 810, 949
BseJI GATNNNNATC 2 cut(s) 479, 1360
BseLI CCNNNNNNNGG 3 cut(s) 90, 955, 1128
BseMI GCAATG 1 cut(s) 1369
BseMII CTCAG 2 cut(s) 462, 932
BseNI ACTGG 3 cut(s) 217, 673, 1045
BseRI GAGGAG 1 cut(s) 1356
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 2 cut(s) 21, 362
BshFI GGCC 5 cut(s) 740, 936, 1252, 1388, 1429
BshTI ACCGGT 1 cut(s) 804
BsiSI CCGG 4 cut(s) 54, 805, 824, 998
BslFI GGGAC 2 cut(s) 503, 863
BslI CCNNNNNNNGG 3 cut(s) 90, 955, 1128
BsmAI GTCTC 5 cut(s) 1170, 1175, 1257, 1311, 1458
BsmFI GGGAC 2 cut(s) 503, 863
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 5 cut(s) 740, 936, 1252, 1388, 1429
Bso31I GGTCTC 1 cut(s) 1257
Bsp119I TTCGAA 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 949
Bsp1407I TGTACA 1 cut(s) 1257
Bsp143I GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
BspACI CCGC 3 cut(s) 12, 451, 866
BspANI GGCC 5 cut(s) 740, 936, 1252, 1388, 1429
BspCNI CTCAG 2 cut(s) 463, 933
BspLI GGNNCC 3 cut(s) 58, 271, 960
BspPI GGATC 1 cut(s) 1427
BspT104I TTCGAA 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 1257
BsrDI GCAATG 1 cut(s) 1369
BsrFI RCCGGY 3 cut(s) 53, 804, 997
BsrGI TGTACA 1 cut(s) 1257
BsrI ACTGG 3 cut(s) 217, 673, 1045
BssAI RCCGGY 3 cut(s) 53, 804, 997
BssECI CCNNGG 2 cut(s) 888, 1457
BssMI GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
BssNAI GTATAC 1 cut(s) 732
BssT1I CCWWGG 2 cut(s) 888, 1457
Bst1107I GTATAC 1 cut(s) 732
Bst4CI ACNGT 2 cut(s) 396, 622
Bst6I CTCTTC 1 cut(s) 978
BstAUI TGTACA 1 cut(s) 1257
BstBI TTCGAA 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 2 cut(s) 471, 941
BstF5I GGATG 5 cut(s) 453, 592, 616, 810, 949
BstKTI GATC 6 cut(s) 198, 533, 667, 1105, 1358, 1435
BstMAI GTCTC 5 cut(s) 1170, 1175, 1257, 1311, 1458
BstMBI GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
BstMWI GCNNNNNNNGC 1 cut(s) 863
BstPAI GACNNNNGTC 2 cut(s) 1269, 1524
BstSFI CTRYAG 2 cut(s) 1050, 1471
BstSLI GKGCMC 1 cut(s) 949
BstV1I GCAGC 2 cut(s) 21, 362
BstX2I RGATCY 2 cut(s) 1355, 1432
BstYI RGATCY 2 cut(s) 1355, 1432
BstZ17I GTATAC 1 cut(s) 732
BsuRI GGCC 5 cut(s) 740, 936, 1252, 1388, 1429
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 5 cut(s) 453, 592, 616, 810, 949
BtsI GCAGTG 2 cut(s) 786, 844
BtsIMutI CAGTG 3 cut(s) 210, 786, 844
Cac8I GCNNGC 1 cut(s) 855
Cfr10I RCCGGY 3 cut(s) 53, 804, 997
Cfr13I GGNCC 2 cut(s) 802, 1113
Csp6I GTAC 5 cut(s) 242, 284, 508, 1210, 1258
CspAI ACCGGT 1 cut(s) 804
CviAII CATG 3 cut(s) 1012, 1075, 1128
CviQI GTAC 5 cut(s) 242, 284, 508, 1210, 1258
DdeI CTNAG 2 cut(s) 471, 941
DpnI GATC 6 cut(s) 197, 532, 666, 1104, 1357, 1434
DpnII GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
DraIII CACNNNGTG 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
EciI GGCGGA 1 cut(s) 881
Eco130I CCWWGG 2 cut(s) 888, 1457
Eco147I AGGCCT 2 cut(s) 936, 1252
Eco31I GGTCTC 1 cut(s) 1257
Eco32I GATATC 1 cut(s) 821
Eco47I GGWCC 2 cut(s) 802, 1113
Eco57I CTGAAG 1 cut(s) 176
EcoRI GAATTC 2 cut(s) 1476, 1495
EcoRV GATATC 1 cut(s) 821
EcoT14I CCWWGG 2 cut(s) 888, 1457
ErhI CCWWGG 2 cut(s) 888, 1457
FaeI CATG 3 cut(s) 1015, 1078, 1131
FaqI GGGAC 2 cut(s) 503, 863
FatI CATG 3 cut(s) 1011, 1074, 1127
FauI CCCGC 1 cut(s) 444
FauNDI CATATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 664
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 3 cut(s) 10, 13, 351
FokI GGATG 5 cut(s) 460, 599, 623, 797, 936
Fsp4HI GCNGC 3 cut(s) 10, 13, 351
FspBI CTAG 9 cut(s) 260, 309, 788, 872, 929, 1068, 1178, 1248, 1349
GluI GCNGC 3 cut(s) 10, 13, 351
HaeIII GGCC 5 cut(s) 740, 936, 1252, 1388, 1429
HapII CCGG 4 cut(s) 54, 805, 824, 998
Hin1II CATG 3 cut(s) 1015, 1078, 1131
HincII GTYRAC 1 cut(s) 1519
HindII GTYRAC 1 cut(s) 1519
HpaII CCGG 4 cut(s) 54, 805, 824, 998
HphI GGTGA 6 cut(s) 454, 968, 979, 1232, 1446, 1547
Hpy166II GTNNAC 6 cut(s) 233, 296, 510, 732, 1258, 1519
Hpy188I TCNGA 8 cut(s) 34, 77, 195, 562, 700, 714, 942, 1275
Hpy188III TCNNGA 7 cut(s) 145, 155, 309, 1191, 1316, 1420, 1529
Hpy8I GTNNAC 6 cut(s) 233, 296, 510, 732, 1258, 1519
Hpy99I CGWCG 2 cut(s) 49, 1504
HpyAV CCTTC 8 cut(s) 297, 373, 400, 577, 947, 1291, 1319, 1526
HpyCH4III ACNGT 2 cut(s) 396, 622
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 350, 799, 810, 853, 1078
HpyF10VI GCNNNNNNNGC 1 cut(s) 863
HpyF3I CTNAG 2 cut(s) 471, 941
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 3 cut(s) 1015, 1078, 1131
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
LmnI GCTCC 4 cut(s) 62, 269, 868, 964
Lsp1109I GCAGC 2 cut(s) 21, 362
LweI GCATC 3 cut(s) 438, 786, 819
MaeI CTAG 9 cut(s) 260, 309, 788, 872, 929, 1068, 1178, 1248, 1349
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 6 cut(s) 199, 208, 465, 704, 967, 1452
MalI GATC 6 cut(s) 197, 532, 666, 1104, 1357, 1434
MboI GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
MboII GAAGA 7 cut(s) 38, 123, 182, 415, 805, 965, 1472
MfeI CAATTG 2 cut(s) 1401, 1522
MflI RGATCY 2 cut(s) 1355, 1432
MhlI GDGCHC 1 cut(s) 949
MluCI AATT 8 cut(s) 302, 323, 361, 1204, 1401, 1476, 1495, 1522
MlyI GAGTC 4 cut(s) 712, 885, 964, 1055
MmeI TCCRAC 4 cut(s) 159, 411, 838, 1358
MroXI GAANNNNTTC 1 cut(s) 1280
MseI TTAA 4 cut(s) 180, 1023, 1203, 1242
MslI CAYNNNNRTG 2 cut(s) 909, 984
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 4 cut(s) 54, 805, 824, 998
MunI CAATTG 2 cut(s) 1401, 1522
Mva1269I GAATGC 1 cut(s) 855
MwoI GCNNNNNNNGC 1 cut(s) 863
NdeI CATATG 1 cut(s) 63
NdeII GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
NlaIII CATG 3 cut(s) 1015, 1078, 1131
NlaIV GGNNCC 3 cut(s) 58, 271, 960
NmeAIII GCCGAG 1 cut(s) 1043
NmuCI GTSAC 5 cut(s) 199, 208, 704, 967, 1452
NspV TTCGAA 1 cut(s) 478
PceI AGGCCT 2 cut(s) 936, 1252
PcsI WCGNNNNNNNCGW 2 cut(s) 1015, 1312
PctI GAATGC 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 1280
PfeI GAWTC 7 cut(s) 29, 475, 480, 501, 649, 756, 1303
PflMI CCANNNNNTGG 3 cut(s) 90, 955, 1128
PinAI ACCGGT 1 cut(s) 804
PkrI GCNGC 3 cut(s) 11, 14, 352
PleI GAGTC 4 cut(s) 711, 884, 964, 1055
PpsI GAGTC 4 cut(s) 711, 884, 964, 1055
PshAI GACNNNNGTC 2 cut(s) 1269, 1524
PspN4I GGNNCC 3 cut(s) 58, 271, 960
PspPI GGNCC 2 cut(s) 802, 1113
PsuI RGATCY 2 cut(s) 1355, 1432
RsaI GTAC 5 cut(s) 243, 285, 509, 1211, 1259
RsaNI GTAC 5 cut(s) 242, 284, 508, 1210, 1258
RseI CAYNNNNRTG 2 cut(s) 909, 984
SaqAI TTAA 4 cut(s) 180, 1023, 1203, 1242
SatI GCNGC 3 cut(s) 10, 13, 351
Sau3AI GATC 6 cut(s) 195, 530, 664, 1102, 1355, 1432
Sau96I GGNCC 2 cut(s) 802, 1113
SchI GAGTC 4 cut(s) 712, 885, 964, 1055
SduI GDGCHC 1 cut(s) 949
SfaNI GCATC 3 cut(s) 438, 786, 819
SfcI CTRYAG 2 cut(s) 1050, 1471
SfuI TTCGAA 1 cut(s) 478
SinI GGWCC 2 cut(s) 802, 1113
SmiMI CAYNNNNRTG 2 cut(s) 909, 984
SmlI CTYRAG 3 cut(s) 153, 236, 1189
SmoI CTYRAG 3 cut(s) 153, 236, 1189
Sse9I AATT 8 cut(s) 302, 323, 361, 1204, 1401, 1476, 1495, 1522
SseBI AGGCCT 2 cut(s) 936, 1252
SsiI CCGC 3 cut(s) 12, 451, 866
SspI AATATT 1 cut(s) 178
SspMI CTAG 9 cut(s) 260, 309, 788, 872, 929, 1068, 1178, 1248, 1349
StuI AGGCCT 2 cut(s) 936, 1252
StyI CCWWGG 2 cut(s) 888, 1457
TaaI ACNGT 2 cut(s) 396, 622
TaiI ACGT 1 cut(s) 295
TaqI TCGA 6 cut(s) 478, 548, 1059, 1315, 1499, 1528
TasI AATT 8 cut(s) 302, 323, 361, 1204, 1401, 1476, 1495, 1522
TatI WGTACW 2 cut(s) 507, 1257
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 7 cut(s) 29, 475, 480, 501, 649, 756, 1303
Tru1I TTAA 4 cut(s) 180, 1023, 1203, 1242
Tru9I TTAA 4 cut(s) 180, 1023, 1203, 1242
TscAI CASTG 3 cut(s) 217, 786, 844
TseFI GTSAC 5 cut(s) 199, 208, 704, 967, 1452
TseI GCWGC 2 cut(s) 9, 350
Tsp45I GTSAC 5 cut(s) 199, 208, 704, 967, 1452
TspDTI ATGAA 5 cut(s) 596, 893, 1116, 1227, 1301
TspRI CASTG 3 cut(s) 217, 786, 844
Van91I CCANNNNNTGG 3 cut(s) 90, 955, 1128
VpaK11BI GGWCC 2 cut(s) 802, 1113
XapI RAATTY 3 cut(s) 361, 1476, 1495
XbaI TCTAGA 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 1280
XspI CTAG 9 cut(s) 260, 309, 788, 872, 929, 1068, 1178, 1248, 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.