Prupe.6G089900_v2.0.a1

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014929
Physical Location & Seq
Forward (+)
6159614 .. 6162228
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G089900.1

Sequence Viewer

Length: 1470 bp
ATGATAGGCTTCAGAGCCACCCTCACTTGGGTTTTTCTCACCGTTTCTGTTCTCTATGTTCTCTACTCTTCCAACCACCTCCTCTATGATCGTCAAGATTGTCCAACCACTGCGGCACGACATCTTGAAGGCCTCTCCAATGTCACTACCTCTGATATTAAACTTGTGGAAAATAAAGAAGAAGAAGCCTCACAAATAACTGCACTTGCACAAAGGCCTCAGAGATTCGATACAGAGCTTAAACACATTATGTTTGGGATAGCAGCTTCGTCGAATTTGTGGGAAAAGAGGAAGGAGTACATCAAAGTGTGGTGGAGGCCTAAGGAGACTCGAGGGGTCGTTTGGTTGGACAAAAGAGTAAGGATTAGAAGAAACGAGGGACTGCCCGAGATTCGGATTTCAGGGGACACCAGAGGATTTAAGTACACAAATCGCCAAGGACAGAGATCTGCATTAAGGATTTCGAGGGTGGTTTCAGAGACATTGAGGCTCGGAGTGAAGGATGTGAGGTGGTTTGTAATGGGGGATGATGACACAGTTTTCATGGTGGAAAATGTGGTGAGAATTCTCAACAAGTATGACCACACACAATTTTATTATGTAGGAAGCTCATCGGAGAGTCACATTCAGAACATATTTTTCTCATATTCAATGGCATATGGTGGAGGGGGTTTTGCTATAAGTTATCCCTTGGCAGTGGAGCTGGAAAAGATGCAGGACCGGTGCATCCAACGCTATCCGGGGTTATATGGCAGTGATGACAGAATGCAGGCTTGTATGACTGAGCTAGGCGTGCCACTTACCAAGGAAACTGGATTTCATCAGTTTGATGTGTATGGAGATCTGCTAGGCCTGCTGAGTGCCCATCCTGTGACTCCACTGGTTTCCCTTCACCACCTTGATGTAGTGGAACCAATATTCCCACACATGACCCGAGTGAAAGCACTTCACCATCTATTTCAAACCGTCAAGCTCGACTCAGCTAGTGTTATGCAGCAAACAATCTGTTACGACAAAGATCGATACTGGTCCATCTCCATTTCTTGGGGTTATGTAGTTCAAATCTTTAGGGGAATCATTTCTCCAAGAGAACTAGAGACACCCTCAAGGACTTTTCTGAATTGGTATAGAAGAGCTGATTACACAGCATATGCATTCAACACTAGGCCTGTCTACAAGCATCCATGTCAGAAGGCCTTCATTTTCTATATGAACTCAACCCGGTATGATGAAGGTAGAAAGAAAATTATTGCTCACTATACTCGTCAAAAATTTCCTGTTCCTCACTGCCGATGGAAAATGGCCTCACCAGAAACAGTTGATACTGTTGTAGTCTTTAAAAGGCCAGATCCTCTTCGTTGGCAAAAGTCACCAAGGAGAGACTGTTGTAGAATTCTTCCGTCACAAAAGAAAACGACCATGTACCTAATGATTGACTATTGCAGAGTAGGTGAGGTTAGTCAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

490

Amino Acids

57.17

Weight (kDa)

9.4

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07850
fragaria_vesca FvH4_3g34260
malus_domestica MD03G1107200.v1.1 MD11G1119800.v1.1
prunus_persica Prupe.6G089900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0061811
rosa_laevigata RLG00000035508
rosa_multiflora Rmu_sc0004134.1_g000009
rosa_roxburghii Rroxscaffold_1G00018920
rosa_rugosa Rorug05G0344100 Rorug05G0344200
rosa_samantha Rh5AG405000 Rh5BG418000 Rh5CG442500 Rh5DG432100
rosa_wichuraiana Rw5G038040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1044
AccI GTMKAC 1 cut(s) 1173
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 1343
AcsI RAATTY 4 cut(s) 274, 564, 1271, 1392
AfaI GTAC 3 cut(s) 299, 425, 1424
AfiI CCNNNNNNNGG 4 cut(s) 27, 28, 393, 1044
AgeI ACCGGT 1 cut(s) 720
AgsI TTSAA 5 cut(s) 128, 651, 962, 1061, 1159
AloI GAACNNNNNNTCC 2 cut(s) 903, 935
AluBI AGCT 8 cut(s) 238, 266, 609, 703, 787, 973, 983, 1136
AluI AGCT 8 cut(s) 238, 266, 609, 703, 787, 973, 983, 1136
Alw26I GTCTC 4 cut(s) 320, 473, 1091, 1374
AlwI GGATC 1 cut(s) 1343
Ama87I CYCGRG 3 cut(s) 330, 386, 933
AoxI GGCC 8 cut(s) 130, 215, 317, 850, 1166, 1194, 1302, 1343
ApeKI GCWGC 2 cut(s) 263, 994
ApoI RAATTY 4 cut(s) 274, 564, 1271, 1392
AsiGI ACCGGT 1 cut(s) 720
Asp700I GAANNNNTTC 2 cut(s) 1078, 1196
AspS9I GGNCC 2 cut(s) 718, 1029
AsuC2I CCSGG 2 cut(s) 741, 1222
AsuHPI GGTGA 7 cut(s) 31, 571, 884, 941, 1299, 1362, 1463
AvaI CYCGRG 3 cut(s) 330, 386, 933
AvaII GGWCC 2 cut(s) 718, 1029
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 865
BaeI ACNNNNGTAYC 2 cut(s) 1314, 1347
BbvI GCAGC 2 cut(s) 275, 1006
BccI CCATC 4 cut(s) 873, 960, 1040, 1287
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BcnI CCSGG 2 cut(s) 741, 1222
BcoDI GTCTC 4 cut(s) 320, 473, 1091, 1374
BfaI CTAG 5 cut(s) 788, 848, 984, 1094, 1164
BglII AGATCT 2 cut(s) 446, 841
BisI GCNGC 3 cut(s) 114, 264, 995
BlsI GCNGC 3 cut(s) 115, 265, 996
Bme1390I CCNGG 2 cut(s) 741, 1222
Bme18I GGWCC 2 cut(s) 718, 1029
BmeT110I CYCGRG 3 cut(s) 330, 386, 933
BmgT120I GGNCC 2 cut(s) 718, 1029
BmiI GGNNCC 1 cut(s) 912
BmrFI CCNGG 2 cut(s) 741, 1222
BmsI GCATC 3 cut(s) 702, 735, 1189
BplI GAGNNNNNCTC 3 cut(s) 38, 1088, 1120
BpuEI CTTGAG 1 cut(s) 1090
BpuMI CCSGG 2 cut(s) 741, 1222
Bsa29I ATCGAT 1 cut(s) 1021
BsaJI CCNNGG 5 cut(s) 436, 690, 740, 804, 1373
BsaWI WCCGGW 1 cut(s) 720
BsaXI ACNNNNNCTCC 2 cut(s) 1369, 1399
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 28, 393, 1044
Bse118I RCCGGY 1 cut(s) 720
Bse1I ACTGG 3 cut(s) 817, 885, 1031
Bse21I CCTNAGG 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 1021
BseDI CCNNGG 5 cut(s) 436, 690, 740, 804, 1373
BseGI GGATG 5 cut(s) 508, 532, 726, 865, 1180
BseLI CCNNNNNNNGG 4 cut(s) 27, 28, 393, 1044
BseMII CTCAG 4 cut(s) 233, 774, 848, 993
BseNI ACTGG 3 cut(s) 817, 885, 1031
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 2 cut(s) 275, 1006
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 8 cut(s) 132, 217, 319, 852, 1168, 1196, 1304, 1345
BshTI ACCGGT 1 cut(s) 720
BshVI ATCGAT 1 cut(s) 1021
BsiHKCI CYCGRG 3 cut(s) 330, 386, 933
BsiSI CCGG 3 cut(s) 721, 740, 1222
BslFI GGGAC 2 cut(s) 393, 419
BslI CCNNNNNNNGG 4 cut(s) 27, 28, 393, 1044
BsmAI GTCTC 4 cut(s) 320, 473, 1091, 1374
BsmFI GGGAC 2 cut(s) 393, 419
BsmI GAATGC 2 cut(s) 771, 1154
BsnI GGCC 8 cut(s) 132, 217, 319, 852, 1168, 1196, 1304, 1345
BsoBI CYCGRG 3 cut(s) 330, 386, 933
Bsp1286I GDGCHC 1 cut(s) 865
Bsp143I GATC 5 cut(s) 88, 446, 841, 1018, 1348
BspACI CCGC 1 cut(s) 113
BspANI GGCC 8 cut(s) 132, 217, 319, 852, 1168, 1196, 1304, 1345
BspCNI CTCAG 4 cut(s) 232, 775, 849, 992
BspDI ATCGAT 1 cut(s) 1021
BspLI GGNNCC 1 cut(s) 912
BspPI GGATC 1 cut(s) 1343
BspQI GCTCTTC 1 cut(s) 1126
BsrFI RCCGGY 1 cut(s) 720
BsrI ACTGG 3 cut(s) 817, 885, 1031
BssAI RCCGGY 1 cut(s) 720
BssECI CCNNGG 5 cut(s) 436, 690, 740, 804, 1373
BssMI GATC 5 cut(s) 88, 446, 841, 1018, 1348
BssT1I CCWWGG 4 cut(s) 436, 690, 804, 1373
Bst4CI ACNGT 6 cut(s) 43, 538, 967, 1318, 1327, 1385
Bst6I CTCTTC 3 cut(s) 73, 1126, 1359
BstC8I GCNNGC 3 cut(s) 771, 794, 854
BstDEI CTNAG 5 cut(s) 219, 321, 783, 857, 979
BstF5I GGATG 5 cut(s) 508, 532, 726, 865, 1180
BstKTI GATC 5 cut(s) 91, 449, 844, 1021, 1351
BstMAI GTCTC 4 cut(s) 320, 473, 1091, 1374
BstMBI GATC 5 cut(s) 88, 446, 841, 1018, 1348
BstMWI GCNNNNNNNGC 3 cut(s) 732, 793, 853
BstSCI CCNGG 2 cut(s) 739, 1220
BstSLI GKGCMC 1 cut(s) 865
BstV1I GCAGC 2 cut(s) 275, 1006
BstX2I RGATCY 3 cut(s) 446, 841, 1348
BstYI RGATCY 3 cut(s) 446, 841, 1348
Bsu15I ATCGAT 1 cut(s) 1021
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 8 cut(s) 132, 217, 319, 852, 1168, 1196, 1304, 1345
BsuTUI ATCGAT 1 cut(s) 1021
BtsCI GGATG 5 cut(s) 508, 532, 726, 865, 1180
BtsI GCAGTG 4 cut(s) 108, 702, 760, 1285
BtsIMutI CAGTG 5 cut(s) 108, 702, 760, 878, 1285
Cac8I GCNNGC 3 cut(s) 771, 794, 854
Cfr10I RCCGGY 1 cut(s) 720
Cfr13I GGNCC 2 cut(s) 718, 1029
ClaI ATCGAT 1 cut(s) 1021
Csp6I GTAC 3 cut(s) 298, 424, 1423
CspAI ACCGGT 1 cut(s) 720
CviAII CATG 4 cut(s) 544, 928, 1185, 1420
CviQI GTAC 3 cut(s) 298, 424, 1423
DdeI CTNAG 5 cut(s) 219, 321, 783, 857, 979
DpnI GATC 5 cut(s) 90, 448, 843, 1020, 1350
DpnII GATC 5 cut(s) 88, 446, 841, 1018, 1348
DraI TTTAAA 1 cut(s) 1339
Eam1104I CTCTTC 3 cut(s) 73, 1126, 1359
EarI CTCTTC 3 cut(s) 73, 1126, 1359
Eco130I CCWWGG 4 cut(s) 436, 690, 804, 1373
Eco147I AGGCCT 6 cut(s) 132, 217, 319, 852, 1168, 1196
Eco47I GGWCC 2 cut(s) 718, 1029
Eco81I CCTNAGG 1 cut(s) 321
Eco88I CYCGRG 3 cut(s) 330, 386, 933
EcoRI GAATTC 2 cut(s) 564, 1392
EcoT14I CCWWGG 4 cut(s) 436, 690, 804, 1373
EcoT22I ATGCAT 1 cut(s) 1156
ErhI CCWWGG 4 cut(s) 436, 690, 804, 1373
FaeI CATG 4 cut(s) 547, 931, 1188, 1423
FaqI GGGAC 2 cut(s) 393, 419
FatI CATG 4 cut(s) 543, 927, 1184, 1419
FauNDI CATATG 2 cut(s) 658, 1150
FblI GTMKAC 1 cut(s) 1173
Fnu4HI GCNGC 3 cut(s) 114, 264, 995
FokI GGATG 5 cut(s) 515, 539, 713, 852, 1167
Fsp4HI GCNGC 3 cut(s) 114, 264, 995
FspBI CTAG 5 cut(s) 788, 848, 984, 1094, 1164
GluI GCNGC 3 cut(s) 114, 264, 995
HaeIII GGCC 8 cut(s) 132, 217, 319, 852, 1168, 1196, 1304, 1345
HapII CCGG 3 cut(s) 721, 740, 1222
Hin1II CATG 4 cut(s) 547, 931, 1188, 1423
HinfI GANTC 7 cut(s) 225, 328, 391, 619, 874, 977, 1074
HpaII CCGG 3 cut(s) 721, 740, 1222
HphI GGTGA 7 cut(s) 31, 571, 884, 941, 1299, 1362, 1463
Hpy166II GTNNAC 2 cut(s) 426, 1174
Hpy188III TCNNGA 2 cut(s) 95, 125
Hpy8I GTNNAC 2 cut(s) 426, 1174
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 7 cut(s) 122, 286, 493, 899, 1186, 1207, 1226
HpyCH4III ACNGT 6 cut(s) 43, 538, 967, 1318, 1327, 1385
HpyCH4V TGCA 9 cut(s) 203, 209, 452, 715, 726, 769, 994, 1154, 1443
HpyF10VI GCNNNNNNNGC 3 cut(s) 732, 793, 853
HpyF3I CTNAG 5 cut(s) 219, 321, 783, 857, 979
Hsp92II CATG 4 cut(s) 547, 931, 1188, 1423
Kzo9I GATC 5 cut(s) 88, 446, 841, 1018, 1348
LguI GCTCTTC 1 cut(s) 1126
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 2 cut(s) 275, 1006
LweI GCATC 3 cut(s) 702, 735, 1189
MaeI CTAG 5 cut(s) 788, 848, 984, 1094, 1164
MaeIII GTNAC 6 cut(s) 142, 620, 871, 1007, 1368, 1401
MalI GATC 5 cut(s) 90, 448, 843, 1020, 1350
MboI GATC 5 cut(s) 88, 446, 841, 1018, 1348
MboII GAAGA 7 cut(s) 60, 191, 194, 381, 1143, 1346, 1388
MflI RGATCY 3 cut(s) 446, 841, 1348
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 7 cut(s) 274, 564, 590, 1120, 1245, 1271, 1392
MlyI GAGTC 4 cut(s) 322, 628, 868, 971
MmeI TCCRAC 4 cut(s) 96, 128, 327, 754
Mph1103I ATGCAT 1 cut(s) 1156
MroXI GAANNNNTTC 2 cut(s) 1078, 1196
MseI TTAA 5 cut(s) 159, 240, 420, 455, 1338
MslI CAYNNNNRTG 2 cut(s) 305, 900
MspI CCGG 3 cut(s) 721, 740, 1222
MspR9I CCNGG 2 cut(s) 741, 1222
Mva1269I GAATGC 2 cut(s) 771, 1154
MwoI GCNNNNNNNGC 3 cut(s) 732, 793, 853
NciI CCSGG 2 cut(s) 741, 1222
NdeI CATATG 2 cut(s) 658, 1150
NdeII GATC 5 cut(s) 88, 446, 841, 1018, 1348
NlaIII CATG 4 cut(s) 547, 931, 1188, 1423
NlaIV GGNNCC 1 cut(s) 912
NmuCI GTSAC 5 cut(s) 142, 620, 871, 1368, 1401
NsiI ATGCAT 1 cut(s) 1156
PaeR7I CTCGAG 1 cut(s) 330
PceI AGGCCT 6 cut(s) 132, 217, 319, 852, 1168, 1196
PciSI GCTCTTC 1 cut(s) 1126
PctI GAATGC 2 cut(s) 771, 1154
PdmI GAANNNNTTC 2 cut(s) 1078, 1196
PfeI GAWTC 3 cut(s) 225, 391, 1074
PflMI CCANNNNNTGG 1 cut(s) 1044
PinAI ACCGGT 1 cut(s) 720
PkrI GCNGC 3 cut(s) 115, 265, 996
PleI GAGTC 4 cut(s) 322, 627, 868, 971
PpsI GAGTC 4 cut(s) 322, 627, 868, 971
PspN4I GGNNCC 1 cut(s) 912
PspPI GGNCC 2 cut(s) 718, 1029
PspXI VCTCGAGB 1 cut(s) 330
PsuI RGATCY 3 cut(s) 446, 841, 1348
RsaI GTAC 3 cut(s) 299, 425, 1424
RsaNI GTAC 3 cut(s) 298, 424, 1423
RseI CAYNNNNRTG 2 cut(s) 305, 900
SapI GCTCTTC 1 cut(s) 1126
SaqAI TTAA 5 cut(s) 159, 240, 420, 455, 1338
SatI GCNGC 3 cut(s) 114, 264, 995
Sau3AI GATC 5 cut(s) 88, 446, 841, 1018, 1348
Sau96I GGNCC 2 cut(s) 718, 1029
SchI GAGTC 4 cut(s) 322, 628, 868, 971
ScrFI CCNGG 2 cut(s) 741, 1222
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 3 cut(s) 702, 735, 1189
Sfr274I CTCGAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 718, 1029
SlaI CTCGAG 1 cut(s) 330
SmiMI CAYNNNNRTG 2 cut(s) 305, 900
SmlI CTYRAG 2 cut(s) 330, 1105
SmoI CTYRAG 2 cut(s) 330, 1105
Sse9I AATT 7 cut(s) 274, 564, 590, 1120, 1245, 1271, 1392
SseBI AGGCCT 6 cut(s) 132, 217, 319, 852, 1168, 1196
SsiI CCGC 1 cut(s) 113
SspI AATATT 1 cut(s) 918
SspMI CTAG 5 cut(s) 788, 848, 984, 1094, 1164
StuI AGGCCT 6 cut(s) 132, 217, 319, 852, 1168, 1196
StyD4I CCNGG 2 cut(s) 739, 1220
StyI CCWWGG 4 cut(s) 436, 690, 804, 1373
TaaI ACNGT 6 cut(s) 43, 538, 967, 1318, 1327, 1385
TaqI TCGA 6 cut(s) 228, 272, 331, 464, 975, 1021
TasI AATT 7 cut(s) 274, 564, 590, 1120, 1245, 1271, 1392
TatI WGTACW 2 cut(s) 297, 423
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 225, 391, 1074
Tru1I TTAA 5 cut(s) 159, 240, 420, 455, 1338
Tru9I TTAA 5 cut(s) 159, 240, 420, 455, 1338
TscAI CASTG 5 cut(s) 115, 702, 760, 885, 1292
TseFI GTSAC 5 cut(s) 142, 620, 871, 1368, 1401
TseI GCWGC 2 cut(s) 263, 994
Tsp45I GTSAC 5 cut(s) 142, 620, 871, 1368, 1401
TspDTI ATGAA 5 cut(s) 532, 809, 1189, 1226, 1245
TspGWI ACGGA 1 cut(s) 1389
TspRI CASTG 5 cut(s) 115, 702, 760, 885, 1292
Van91I CCANNNNNTGG 1 cut(s) 1044
VpaK11BI GGWCC 2 cut(s) 718, 1029
XapI RAATTY 4 cut(s) 274, 564, 1271, 1392
XhoI CTCGAG 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 1173
XmnI GAANNNNTTC 2 cut(s) 1078, 1196
XspI CTAG 5 cut(s) 788, 848, 984, 1094, 1164
Zsp2I ATGCAT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.