Rmu_sc0004134.1_g000009

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004134.1
OG0014929
Physical Location & Seq
Forward (+)
39174 .. 40856
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004134.1_g000009.1.cds

Sequence Viewer

Length: 1467 bp
atggggggcagcagcaacaagtttgaagattccgataagaaatcgtcgcataccggcacccaaatgataggtgtcagagccaccataacttgggttttcctcataatgtcaatgctttatgttctttattcttccaaccacctcctccattctcaagattgtcgtacccctgtaaatgtcaatcatcttcagagcgtcaaaaatgtcactgccagtaatgatgttagtagacttgaggaacgaggcaaacaaagaatagggcaagaagccaaagaagtagtaccttcacgtccacaaaaatctagatttgatacagaattgaaacacgttgtgtttgggattgcagcctcgtcaaagttgtgggagtggaggaaggaatacataaaagtgtggtggaggaaggagatgagaggggtggtttggttggacaaaaatgtgaggactcggagaaatgaggtattacctgagattcgtatttctggggacaccagaggattcaagtacacaaatcggcaaggggatagatcagcattgaggatttcgagggtggtttcggaaacgttgaggcttggattggaggatgtgagatggtttgtgatgggggatgatgacacagttttcgtggtggataatgtgttgaggattctttcaaaatatgatcatacacagttttactatataggaagctcatcagagagtcacattcagaacatatttttctcgtataccatggcctttggtggaggtggattcgcgataagttatccattggcagtgcaactcgagaagatgcaggaccggtgcatccaacgatatccggcattatatggcagtgatgatagaatacaggcttgcatggcagagctaggagttcctcttaccaaggaaacaggatttcatcagtatgatgtgtatggaaacctacaaggccttctgagtgcccatcctgtggctccattggtatctcttcaccaccttgatgtagttgacccagtattcccgcgcatgacccgtgtcagagcacttcaccatctattccagtctgtagagctcgactcagctagtatattgcaacaatcaatctgctatgacaaagatcattactggtccatctccatttcatggggctatgtagttcaaatcgtcaggggagtcatctctccaagagaactagaaacaccctcaagaacctttcttaattggcacagaagagctgatttcacagcatattcatttaacactaggcctgtgtacaaggacccttgtgagaaacccttccttttctatttgaacacgaatcgccttcatcgagatagacagaaagtttttggcttctatacgcgtgataaatctccagctcctctttgccgttggaaaatggcctccccagacacgattgataccatcattgtcttgaaaaggccagatcctgttcgttgggaaaaggtaaggtttcaaaagacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

488

Amino Acids

56.69

Weight (kDa)

9.47

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07850
fragaria_vesca FvH4_3g34260
malus_domestica MD03G1107200.v1.1 MD11G1119800.v1.1
prunus_persica Prupe.6G089900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0061811
rosa_laevigata RLG00000035508
rosa_multiflora Rmu_sc0004134.1_g000009
rosa_roxburghii Rroxscaffold_1G00018920
rosa_rugosa Rorug05G0344100 Rorug05G0344200
rosa_samantha Rh5AG405000 Rh5BG418000 Rh5CG442500 Rh5DG432100
rosa_wichuraiana Rw5G038040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 3 cut(s) 90, 949, 1122
AccI GTMKAC 2 cut(s) 229, 725
AccII CGCG 3 cut(s) 755, 1003, 1342
AciI CCGC 1 cut(s) 1001
AclI AACGTT 1 cut(s) 560
AclWI GGATC 1 cut(s) 1421
AcuI CTGAAG 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 4 cut(s) 166, 282, 503, 1253
AfiI CCNNNNNNNGG 3 cut(s) 90, 949, 1122
AflIII ACRYGT 2 cut(s) 325, 1340
AgeI ACCGGT 1 cut(s) 798
AgsI TTSAA 8 cut(s) 26, 322, 499, 651, 1139, 1291, 1417, 1457
AjiI CACGTC 1 cut(s) 290
AluBI AGCT 6 cut(s) 687, 865, 1051, 1061, 1214, 1358
AluI AGCT 6 cut(s) 687, 865, 1051, 1061, 1214, 1358
Alw21I GWGCWC 2 cut(s) 1024, 1053
AlwI GGATC 1 cut(s) 1421
AlwNI CAGNNNCTG 1 cut(s) 1430
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 5 cut(s) 732, 928, 1244, 1380, 1421
ApeKI GCWGC 3 cut(s) 9, 12, 344
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AsiGI ACCGGT 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 1274
AspLEI GCGC 1 cut(s) 1005
AspS9I GGNCC 3 cut(s) 796, 1107, 1258
AsuHPI GGTGA 2 cut(s) 962, 1019
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 3 cut(s) 796, 1107, 1258
BaeGI GKGCMC 1 cut(s) 943
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 1053
Bbv12I GWGCWC 2 cut(s) 1024, 1053
BbvI GCAGC 3 cut(s) 21, 24, 356
BccI CCATC 6 cut(s) 582, 592, 951, 1038, 1118, 1412
BceAI ACGGC 1 cut(s) 1353
BclI TGATCA 1 cut(s) 658
BfaI CTAG 5 cut(s) 303, 866, 1062, 1172, 1242
BfmI CTRYAG 1 cut(s) 1044
BisI GCNGC 3 cut(s) 10, 13, 345
BlsI GCNGC 3 cut(s) 11, 14, 346
Bme18I GGWCC 3 cut(s) 796, 1107, 1258
BmeT110I CYCGRG 1 cut(s) 782
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 3 cut(s) 796, 1107, 1258
BmiI GGNNCC 3 cut(s) 58, 954, 1260
BmrI ACTGGG 1 cut(s) 986
BmsI GCATC 2 cut(s) 780, 813
BmuI ACTGGG 1 cut(s) 986
BoxI GACNNNNGTC 1 cut(s) 1013
BplI GAGNNNNNCTC 2 cut(s) 1040, 1072
BpmI CTGGAG 1 cut(s) 1338
BpuEI CTTGAG 3 cut(s) 138, 254, 1168
BsaJI CCNNGG 2 cut(s) 729, 882
BsaWI WCCGGW 1 cut(s) 798
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 949, 1122
Bse118I RCCGGY 2 cut(s) 53, 798
Bse1I ACTGG 4 cut(s) 213, 992, 1039, 1109
BseDI CCNNGG 2 cut(s) 729, 882
BseGI GGATG 4 cut(s) 586, 610, 804, 943
BseLI CCNNNNNNNGG 3 cut(s) 90, 949, 1122
BseMII CTCAG 3 cut(s) 456, 926, 1071
BseNI ACTGG 4 cut(s) 213, 992, 1039, 1109
BseRI GAGGAG 2 cut(s) 134, 1350
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 3 cut(s) 21, 24, 356
Bsh1236I CGCG 3 cut(s) 755, 1003, 1342
BshFI GGCC 5 cut(s) 734, 930, 1246, 1382, 1423
BshNI GGYRCC 1 cut(s) 56
BshTI ACCGGT 1 cut(s) 798
BsiHKAI GWGCWC 2 cut(s) 1024, 1053
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 3 cut(s) 54, 799, 818
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 90, 949, 1122
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 5 cut(s) 734, 930, 1246, 1382, 1423
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 3 cut(s) 943, 1024, 1053
Bsp1407I TGTACA 1 cut(s) 1251
Bsp143I GATC 4 cut(s) 524, 658, 1096, 1426
Bsp19I CCATGG 1 cut(s) 729
Bsp68I TCGCGA 1 cut(s) 755
BspACI CCGC 1 cut(s) 1001
BspANI GGCC 5 cut(s) 734, 930, 1246, 1382, 1423
BspCNI CTCAG 3 cut(s) 457, 927, 1070
BspFNI CGCG 3 cut(s) 755, 1003, 1342
BspLI GGNNCC 3 cut(s) 58, 954, 1260
BspPI GGATC 1 cut(s) 1421
BspQI GCTCTTC 1 cut(s) 1204
BspT107I GGYRCC 1 cut(s) 56
BsrFI RCCGGY 2 cut(s) 53, 798
BsrGI TGTACA 1 cut(s) 1251
BsrI ACTGG 4 cut(s) 213, 992, 1039, 1109
BssAI RCCGGY 2 cut(s) 53, 798
BssECI CCNNGG 2 cut(s) 729, 882
BssMI GATC 4 cut(s) 524, 658, 1096, 1426
BssNAI GTATAC 1 cut(s) 726
BssT1I CCWWGG 2 cut(s) 729, 882
Bst1107I GTATAC 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 616, 669
Bst6I CTCTTC 2 cut(s) 972, 1204
BstAUI TGTACA 1 cut(s) 1251
BstC8I GCNNGC 1 cut(s) 853
BstDEI CTNAG 3 cut(s) 465, 935, 1057
BstDSI CCRYGG 1 cut(s) 729
BstF5I GGATG 4 cut(s) 586, 610, 804, 943
BstFNI CGCG 3 cut(s) 755, 1003, 1342
BstHHI GCGC 1 cut(s) 1005
BstKTI GATC 4 cut(s) 527, 661, 1099, 1429
BstMBI GATC 4 cut(s) 524, 658, 1096, 1426
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstPAI GACNNNNGTC 1 cut(s) 1013
BstSFI CTRYAG 1 cut(s) 1044
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 3 cut(s) 755, 1003, 1342
BstV1I GCAGC 3 cut(s) 21, 24, 356
BstX2I RGATCY 1 cut(s) 1426
BstYI RGATCY 1 cut(s) 1426
BstZ17I GTATAC 1 cut(s) 726
BsuRI GGCC 5 cut(s) 734, 930, 1246, 1382, 1423
BtgI CCRYGG 1 cut(s) 729
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 4 cut(s) 586, 610, 804, 943
BtsI GCAGTG 3 cut(s) 207, 780, 838
BtsIMutI CAGTG 3 cut(s) 207, 780, 838
BtuMI TCGCGA 1 cut(s) 755
Cac8I GCNNGC 1 cut(s) 853
CaiI CAGNNNCTG 1 cut(s) 1430
CfoI GCGC 1 cut(s) 1005
Cfr10I RCCGGY 2 cut(s) 53, 798
Cfr13I GGNCC 3 cut(s) 796, 1107, 1258
CseI GACGC 1 cut(s) 184
Csp6I GTAC 4 cut(s) 165, 281, 502, 1252
CspAI ACCGGT 1 cut(s) 798
CviAII CATG 5 cut(s) 730, 856, 1006, 1122, 1464
CviQI GTAC 4 cut(s) 165, 281, 502, 1252
DdeI CTNAG 3 cut(s) 465, 935, 1057
DpnI GATC 4 cut(s) 526, 660, 1098, 1428
DpnII GATC 4 cut(s) 524, 658, 1096, 1426
DraIII CACNNNGTG 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 972, 1204
EarI CTCTTC 2 cut(s) 972, 1204
Ecl136II GAGCTC 1 cut(s) 1051
Eco130I CCWWGG 2 cut(s) 729, 882
Eco147I AGGCCT 2 cut(s) 930, 1246
Eco24I GRGCYC 1 cut(s) 1053
Eco32I GATATC 1 cut(s) 815
Eco47I GGWCC 3 cut(s) 796, 1107, 1258
Eco53kI GAGCTC 1 cut(s) 1051
Eco57I CTGAAG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 1051
EcoO109I RGGNCCY 1 cut(s) 1258
EcoRV GATATC 1 cut(s) 815
EcoT14I CCWWGG 2 cut(s) 729, 882
EcoT38I GRGCYC 1 cut(s) 1053
ErhI CCWWGG 2 cut(s) 729, 882
FaeI CATG 5 cut(s) 733, 859, 1009, 1125, 1467
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 729, 855, 1005, 1121, 1463
FauI CCCGC 1 cut(s) 1008
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 2 cut(s) 229, 725
Fnu4HI GCNGC 3 cut(s) 10, 13, 345
FokI GGATG 4 cut(s) 593, 617, 791, 930
FriOI GRGCYC 1 cut(s) 1053
Fsp4HI GCNGC 3 cut(s) 10, 13, 345
FspBI CTAG 5 cut(s) 303, 866, 1062, 1172, 1242
GlaI GCGC 1 cut(s) 1004
GluI GCNGC 3 cut(s) 10, 13, 345
GsuI CTGGAG 1 cut(s) 1338
HaeIII GGCC 5 cut(s) 734, 930, 1246, 1382, 1423
HapII CCGG 3 cut(s) 54, 799, 818
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 1005
Hin1II CATG 5 cut(s) 733, 859, 1009, 1125, 1467
Hin6I GCGC 1 cut(s) 1003
HinP1I GCGC 1 cut(s) 1003
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HpaII CCGG 3 cut(s) 54, 799, 818
HphI GGTGA 2 cut(s) 962, 1019
Hpy166II GTNNAC 6 cut(s) 230, 293, 504, 726, 988, 1252
Hpy188I TCNGA 9 cut(s) 34, 77, 192, 447, 556, 694, 708, 936, 1019
Hpy188III TCNNGA 7 cut(s) 155, 303, 754, 784, 1185, 1310, 1414
Hpy8I GTNNAC 6 cut(s) 230, 293, 504, 726, 988, 1252
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 6 cut(s) 294, 367, 394, 941, 1285, 1313
HpyCH4III ACNGT 2 cut(s) 616, 669
HpyCH4IV ACGT 3 cut(s) 289, 327, 560
HpyCH4V TGCA 6 cut(s) 344, 778, 793, 804, 855, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 3 cut(s) 465, 935, 1057
HpySE526I ACGT 3 cut(s) 289, 327, 560
Hsp92II CATG 5 cut(s) 733, 859, 1009, 1125, 1467
HspAI GCGC 1 cut(s) 1003
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 4 cut(s) 524, 658, 1096, 1426
LguI GCTCTTC 1 cut(s) 1204
LmnI GCTCC 2 cut(s) 958, 1363
Lsp1109I GCAGC 3 cut(s) 21, 24, 356
LweI GCATC 2 cut(s) 780, 813
MaeI CTAG 5 cut(s) 303, 866, 1062, 1172, 1242
MaeII ACGT 3 cut(s) 289, 327, 560
MaeIII GTNAC 2 cut(s) 205, 698
MalI GATC 4 cut(s) 526, 660, 1098, 1428
MboI GATC 4 cut(s) 524, 658, 1096, 1426
MboII GAAGA 6 cut(s) 38, 123, 179, 799, 959, 1221
MflI RGATCY 1 cut(s) 1426
MhlI GDGCHC 3 cut(s) 943, 1024, 1053
MluCI AATT 2 cut(s) 317, 1198
MluI ACGCGT 1 cut(s) 1340
MlyI GAGTC 4 cut(s) 436, 706, 1049, 1161
MmeI TCCRAC 4 cut(s) 159, 405, 832, 1352
MroXI GAANNNNTTC 1 cut(s) 1274
MseI TTAA 2 cut(s) 1197, 1236
MslI CAYNNNNRTG 4 cut(s) 62, 386, 903, 978
MspI CCGG 3 cut(s) 54, 799, 818
MvnI CGCG 3 cut(s) 755, 1003, 1342
MwoI GCNNNNNNNGC 1 cut(s) 857
NcoI CCATGG 1 cut(s) 729
NdeII GATC 4 cut(s) 524, 658, 1096, 1426
NlaIII CATG 5 cut(s) 733, 859, 1009, 1125, 1467
NlaIV GGNNCC 3 cut(s) 58, 954, 1260
NmuCI GTSAC 2 cut(s) 205, 698
NruI TCGCGA 1 cut(s) 755
PaeR7I CTCGAG 1 cut(s) 782
PceI AGGCCT 2 cut(s) 930, 1246
PciSI GCTCTTC 1 cut(s) 1204
PcsI WCGNNNNNNNCGW 1 cut(s) 1306
PdmI GAANNNNTTC 1 cut(s) 1274
PfeI GAWTC 6 cut(s) 29, 469, 495, 643, 750, 1297
PflMI CCANNNNNTGG 3 cut(s) 90, 949, 1122
PinAI ACCGGT 1 cut(s) 798
PkrI GCNGC 3 cut(s) 11, 14, 346
PleI GAGTC 4 cut(s) 436, 705, 1049, 1160
PpsI GAGTC 4 cut(s) 436, 705, 1049, 1160
PpuMI RGGWCCY 1 cut(s) 1258
PshAI GACNNNNGTC 1 cut(s) 1013
Psp124BI GAGCTC 1 cut(s) 1053
Psp1406I AACGTT 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 1258
PspN4I GGNNCC 3 cut(s) 58, 954, 1260
PspPI GGNCC 3 cut(s) 796, 1107, 1258
PspPPI RGGWCCY 1 cut(s) 1258
PstNI CAGNNNCTG 1 cut(s) 1430
PsuI RGATCY 1 cut(s) 1426
RruI TCGCGA 1 cut(s) 755
RsaI GTAC 4 cut(s) 166, 282, 503, 1253
RsaNI GTAC 4 cut(s) 165, 281, 502, 1252
RseI CAYNNNNRTG 4 cut(s) 62, 386, 903, 978
SacI GAGCTC 1 cut(s) 1053
SapI GCTCTTC 1 cut(s) 1204
SaqAI TTAA 2 cut(s) 1197, 1236
SatI GCNGC 3 cut(s) 10, 13, 345
Sau3AI GATC 4 cut(s) 524, 658, 1096, 1426
Sau96I GGNCC 3 cut(s) 796, 1107, 1258
SchI GAGTC 4 cut(s) 436, 706, 1049, 1161
SduI GDGCHC 3 cut(s) 943, 1024, 1053
SfaNI GCATC 2 cut(s) 780, 813
SfcI CTRYAG 1 cut(s) 1044
Sfr274I CTCGAG 1 cut(s) 782
SinI GGWCC 3 cut(s) 796, 1107, 1258
SlaI CTCGAG 1 cut(s) 782
SmiMI CAYNNNNRTG 4 cut(s) 62, 386, 903, 978
SmlI CTYRAG 4 cut(s) 153, 233, 782, 1183
SmoI CTYRAG 4 cut(s) 153, 233, 782, 1183
Sse9I AATT 2 cut(s) 317, 1198
SseBI AGGCCT 2 cut(s) 930, 1246
SsiI CCGC 1 cut(s) 1001
SspMI CTAG 5 cut(s) 303, 866, 1062, 1172, 1242
SstI GAGCTC 1 cut(s) 1053
StuI AGGCCT 2 cut(s) 930, 1246
StyI CCWWGG 2 cut(s) 729, 882
TaaI ACNGT 2 cut(s) 616, 669
TaiI ACGT 3 cut(s) 292, 330, 563
TaqI TCGA 4 cut(s) 542, 783, 1053, 1309
TasI AATT 2 cut(s) 317, 1198
TatI WGTACW 2 cut(s) 501, 1251
TfiI GAWTC 6 cut(s) 29, 469, 495, 643, 750, 1297
Tru1I TTAA 2 cut(s) 1197, 1236
Tru9I TTAA 2 cut(s) 1197, 1236
TscAI CASTG 3 cut(s) 214, 780, 838
TseFI GTSAC 2 cut(s) 205, 698
TseI GCWGC 3 cut(s) 9, 12, 344
Tsp45I GTSAC 2 cut(s) 205, 698
TspDTI ATGAA 4 cut(s) 887, 1110, 1221, 1295
TspRI CASTG 3 cut(s) 214, 780, 838
Van91I CCANNNNNTGG 3 cut(s) 90, 949, 1122
VpaK11BI GGWCC 3 cut(s) 796, 1107, 1258
XbaI TCTAGA 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 229, 725
XmnI GAANNNNTTC 1 cut(s) 1274
XspI CTAG 5 cut(s) 303, 866, 1062, 1172, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.