FvH4_3g34350

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017274
Physical Location & Seq
Forward (+)
29827161 .. 29828464
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34350.t1

Sequence Viewer

Length: 585 bp
ATGGCAACAAAGAACTATGGATCGTTCTTAACATGCTGTGTACTTTTGCTTGCTTTGCTTGCCGGAGGTGAAAGTCTCGCGCCAGGAAACAAGGAAAATTGTACATACGCAGTTACAATTGAAACAACATGCATCAAAGGTGCTTCGACCTCAAACAACATTAGCCTAAGATTTGGCGACACAAATTCTAATGACGTTCTGGTAAAGCACCTGAACTCCAAGCACATAAGAAGGGTGGATCCAGTAGAGCCCCAAGTCCTTGATGAAGTGCCCAGAAAACCATTTCAAGCTTGTGTTGTGGATCAGTTCCAAGTGATGGGTCAATGCGTTGACTCCCCCATCTGCTATTTGTATCTCAAACTGGCTGGAACTGATGACTGGAGGCCTGGTTTTGCTCAAGTCCATGTCTTGGAGGGATCTCACTCTCATCTGAGTTCCGATTACTTCTACTTCCGTCGCTACCTGCCTCGTCGTGCTTGGCATGGTTCGGATACATGTCAAAAAGAGGTCACTCCCTTTGGCCCCAAACAAAAGAGAGAGGACTTTGCAAAGAAACTAGGGAAAGATATGTCCTTGTTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

195

Amino Acids

21.72

Weight (kDa)

8.39

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 24 - 166 1e-40 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34350
prunus_persica Prupe.6G089000_v2.0.a1
pyrus_communis pycom03g08580
rosa_laevigata RLG00000035520
rosa_multiflora Rmu_sc0011641.1_g000001
rosa_roxburghii Rroxscaffold_1G00018780
rosa_rugosa Rorug05G0345200
rosa_samantha Rh5AG406300 Rh5BG419500 Rh5CG443700 Rh5DG435000
rosa_wichuraiana Rw5G038220 Rw5G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 471
AccB7I CCANNNNNTGG 2 cut(s) 316, 409
AccII CGCG 1 cut(s) 80
AclWI GGATC 5 cut(s) 28, 233, 246, 309, 424
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 2 cut(s) 42, 103
AfiI CCNNNNNNNGG 2 cut(s) 316, 409
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 2 cut(s) 122, 287
AjnI CCWGG 2 cut(s) 82, 385
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 5 cut(s) 28, 233, 246, 309, 424
AoxI GGCC 2 cut(s) 383, 520
ApoI RAATTY 1 cut(s) 184
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 273
BamHI GGATCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 252
BccI CCATC 2 cut(s) 310, 347
BciT130I CCWGG 2 cut(s) 84, 387
BciVI GTATCC 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 557
BfuAI ACCTGC 1 cut(s) 471
BfuI GTATCC 1 cut(s) 484
Bme1390I CCNGG 2 cut(s) 84, 387
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 240, 523
BmrFI CCNGG 2 cut(s) 84, 387
BmsI GCATC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 381
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 373, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 409
Bse1I ACTGG 3 cut(s) 242, 366, 383
BseBI CCWGG 2 cut(s) 84, 387
BseLI CCNNNNNNNGG 2 cut(s) 316, 409
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 3 cut(s) 242, 366, 383
BseSI GKGCMC 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 385, 522
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 316, 409
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 2 cut(s) 385, 522
Bsp1286I GDGCHC 2 cut(s) 252, 273
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 4 cut(s) 20, 238, 301, 416
BspANI GGCC 2 cut(s) 385, 522
BspCNI CTCAG 1 cut(s) 423
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 240, 523
BspMI ACCTGC 1 cut(s) 471
BspPI GGATC 5 cut(s) 28, 233, 246, 309, 424
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 3 cut(s) 242, 366, 383
BssMI GATC 4 cut(s) 20, 238, 301, 416
Bst2UI CCWGG 2 cut(s) 84, 387
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 51, 60
BstDEI CTNAG 2 cut(s) 167, 431
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 4 cut(s) 23, 241, 304, 419
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 4 cut(s) 20, 238, 301, 416
BstMWI GCNNNNNNNGC 2 cut(s) 55, 59
BstNI CCWGG 2 cut(s) 84, 387
BstNSI RCATGY 3 cut(s) 36, 132, 498
BstSCI CCNGG 2 cut(s) 82, 385
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 238, 416
BstYI RGATCY 2 cut(s) 238, 416
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 2 cut(s) 385, 522
BveI ACCTGC 1 cut(s) 471
Cac8I GCNNGC 2 cut(s) 51, 60
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 521
Csp6I GTAC 2 cut(s) 41, 102
CviAII CATG 6 cut(s) 33, 129, 404, 482, 495, 582
CviJI RGCY 6 cut(s) 165, 250, 290, 365, 385, 522
CviKI_1 RGCY 6 cut(s) 165, 250, 290, 365, 385, 522
CviQI GTAC 2 cut(s) 41, 102
DdeI CTNAG 2 cut(s) 167, 431
DpnI GATC 4 cut(s) 22, 240, 303, 418
DpnII GATC 4 cut(s) 20, 238, 301, 416
Eco147I AGGCCT 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 82, 385
EcoT22I ATGCAT 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 6 cut(s) 36, 132, 407, 485, 498, 585
FatI CATG 6 cut(s) 32, 128, 403, 481, 494, 581
FriOI GRGCYC 1 cut(s) 252
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 2 cut(s) 385, 522
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 82
Hin1II CATG 6 cut(s) 36, 132, 407, 485, 498, 585
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 1 cut(s) 332
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 41, 331
Hpy188I TCNGA 3 cut(s) 432, 439, 490
Hpy8I GTNNAC 2 cut(s) 41, 331
Hpy99I CGWCG 2 cut(s) 459, 474
HpyAV CCTTC 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 132, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 59
HpyF3I CTNAG 2 cut(s) 167, 431
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 6 cut(s) 36, 132, 407, 485, 498, 585
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 4 cut(s) 20, 238, 301, 416
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 112, 508
MalI GATC 4 cut(s) 22, 240, 303, 418
MboI GATC 4 cut(s) 20, 238, 301, 416
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 2 cut(s) 238, 416
MhlI GDGCHC 2 cut(s) 252, 273
MluCI AATT 3 cut(s) 97, 117, 184
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 7 cut(s) 59, 160, 375, 406, 477, 499, 532
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 84, 387
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 2 cut(s) 84, 387
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 55, 59
NdeII GATC 4 cut(s) 20, 238, 301, 416
NlaIII CATG 6 cut(s) 36, 132, 407, 485, 498, 585
NlaIV GGNNCC 2 cut(s) 240, 523
NmuCI GTSAC 1 cut(s) 508
NsiI ATGCAT 1 cut(s) 134
NspI RCATGY 3 cut(s) 36, 132, 498
PceI AGGCCT 1 cut(s) 385
PciI ACATGT 1 cut(s) 494
PflMI CCANNNNNTGG 2 cut(s) 316, 409
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PscI ACATGT 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 82, 385
PspGI CCWGG 2 cut(s) 82, 385
PspN4I GGNNCC 2 cut(s) 240, 523
PspPI GGNCC 1 cut(s) 521
PsuI RGATCY 2 cut(s) 238, 416
RsaI GTAC 2 cut(s) 42, 103
RsaNI GTAC 2 cut(s) 41, 102
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 4 cut(s) 20, 238, 301, 416
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 84, 387
SduI GDGCHC 2 cut(s) 252, 273
SetI ASST 8 cut(s) 70, 142, 152, 198, 213, 292, 465, 510
SfaNI GCATC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 3 cut(s) 97, 117, 184
SseBI AGGCCT 1 cut(s) 385
SspMI CTAG 1 cut(s) 557
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 2 cut(s) 82, 385
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 97, 117, 184
TatI WGTACW 2 cut(s) 40, 101
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseFI GTSAC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 443
Van91I CCANNNNNTGG 2 cut(s) 316, 409
XapI RAATTY 1 cut(s) 184
XceI RCATGY 3 cut(s) 36, 132, 498
XspI CTAG 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.