Prupe.6G089000_v2.0.a1

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017274
Physical Location & Seq
Reverse (-)
6095493 .. 6096735
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G089000.1

Sequence Viewer

Length: 579 bp
ATGGGAAATGGAGGACCCTTCTTAATATGTTGTGTGCTTCTTCTTGCTTTAATGGCCGGCGGTCAACGTGCCACGCCAAGAAACAAGGAAAACTGCACCTACGCAGTTACAATTGAAACAACATGCACAAAAGGTGCCGAGACCTCAAACCACATCAGCCTAAGATTTGGTGACACAAATTCAAATGACGTTGTGGTGAGGCACCTAAATTCCAAGCACATAAGAAGGGTGGATCCTTTGGAGCCTGAGGTCCTCGACGATGTGCCGAGAAAACCATTTCAAGCTTGTGTTGTGGATGAGTTCCAAGTGAAGGGTGCATGCGTGGAGTCGCCCATCTGCTACCTCTATCTCAAACTGAGTGGAGCTGATGACTGGAGACCTGGTTTTGCACAAGTCCATGTTTTGGAGGGCTCTGGCTCTCATCTCAGCTCTGAGTACTTCTATTTTCGAAGGTACCTGCCACGCCATGTTTGGCATGGCTTGGATGTGTGCGATGATAAAGAAGTTACTCCTTTTGGGATCAAGCACAAGAGGAAAGTGTTTTGGAAAAAACAAGTGAAAAAATTGCCAGTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

193

Amino Acids

21.7

Weight (kDa)

8.76

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34350
prunus_persica Prupe.6G089000_v2.0.a1
pyrus_communis pycom03g08580
rosa_laevigata RLG00000035520
rosa_multiflora Rmu_sc0011641.1_g000001
rosa_roxburghii Rroxscaffold_1G00018780
rosa_rugosa Rorug05G0345200
rosa_samantha Rh5AG406300 Rh5BG419500 Rh5CG443700 Rh5DG435000
rosa_wichuraiana Rw5G038220 Rw5G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 465
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 3 cut(s) 134, 201, 453
AccB7I CCANNNNNTGG 1 cut(s) 403
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 227, 240, 527
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 178, 208
AfaI GTAC 2 cut(s) 437, 455
AfiI CCNNNNNNNGG 2 cut(s) 310, 403
AgsI TTSAA 3 cut(s) 116, 183, 281
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 3 cut(s) 284, 365, 429
AluI AGCT 3 cut(s) 284, 365, 429
Alw26I GTCTC 2 cut(s) 134, 370
AlwI GGATC 3 cut(s) 227, 240, 527
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 2 cut(s) 178, 208
Asp718I GGTACC 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 14, 250
AsuHPI GGTGA 2 cut(s) 182, 208
AsuII TTCGAA 1 cut(s) 448
AvaII GGWCC 2 cut(s) 14, 250
AxyI CCTNAGG 1 cut(s) 246
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 3 cut(s) 134, 201, 453
BanII GRGCYC 1 cut(s) 413
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 134, 370
BfuAI ACCTGC 1 cut(s) 465
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 2 cut(s) 14, 250
BmgT120I GGNCC 2 cut(s) 14, 250
BmiI GGNNCC 6 cut(s) 16, 136, 203, 234, 243, 455
BmrFI CCNGG 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 394
Bpu14I TTCGAA 1 cut(s) 448
BsaI GGTCTC 2 cut(s) 134, 370
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 403
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 377, 569
Bse21I CCTNAGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 301, 490
BseLI CCNNNNNNNGG 2 cut(s) 310, 403
BseMII CTCAG 4 cut(s) 237, 347, 423, 439
BseNI ACTGG 2 cut(s) 377, 569
BsgI GTGCAG 1 cut(s) 79
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 3 cut(s) 134, 201, 453
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 310, 403
BsmAI GTCTC 2 cut(s) 134, 370
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 2 cut(s) 134, 370
Bsp119I TTCGAA 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 232, 519
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 4 cut(s) 238, 348, 424, 438
BspLI GGNNCC 6 cut(s) 16, 136, 203, 234, 243, 455
BspMI ACCTGC 1 cut(s) 465
BspPI GGATC 3 cut(s) 227, 240, 527
BspT104I TTCGAA 1 cut(s) 448
BspT107I GGYRCC 3 cut(s) 134, 201, 453
BspTNI GGTCTC 2 cut(s) 134, 370
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 377, 569
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 2 cut(s) 232, 519
Bst2UI CCWGG 1 cut(s) 381
BstBI TTCGAA 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 58, 319
BstDEI CTNAG 5 cut(s) 161, 246, 356, 425, 432
BstF5I GGATG 2 cut(s) 301, 490
BstKTI GATC 2 cut(s) 235, 522
BstMAI GTCTC 2 cut(s) 134, 370
BstMBI GATC 2 cut(s) 232, 519
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 2 cut(s) 126, 321
BstSCI CCNGG 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 246
BsuRI GGCC 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 2 cut(s) 301, 490
BveI ACCTGC 1 cut(s) 465
Cac8I GCNNGC 2 cut(s) 58, 319
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 14, 250
CsiI ACCWGGT 1 cut(s) 379
Csp6I GTAC 2 cut(s) 436, 454
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 6 cut(s) 123, 318, 398, 467, 476, 576
CviJI RGCY 9 cut(s) 56, 159, 244, 284, 365, 411, 417, 429, 480
CviKI_1 RGCY 9 cut(s) 56, 159, 244, 284, 365, 411, 417, 429, 480
CviQI GTAC 2 cut(s) 436, 454
DdeI CTNAG 5 cut(s) 161, 246, 356, 425, 432
DpnI GATC 2 cut(s) 234, 521
DpnII GATC 2 cut(s) 232, 519
EaeI YGGCCR 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 413
Eco31I GGTCTC 2 cut(s) 134, 370
Eco47I GGWCC 2 cut(s) 14, 250
Eco81I CCTNAGG 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 14, 250
EcoRII CCWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 413
FaeI CATG 6 cut(s) 126, 321, 401, 470, 479, 579
FaiI YATR 8 cut(s) 28, 124, 221, 319, 399, 468, 477, 577
FatI CATG 6 cut(s) 122, 317, 397, 466, 475, 575
FokI GGATG 2 cut(s) 308, 497
FriOI GRGCYC 1 cut(s) 413
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 57
Hin1II CATG 6 cut(s) 126, 321, 401, 470, 479, 579
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 326
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 182, 208
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 433
Hpy8I GTNNAC 1 cut(s) 65
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 28, 219, 304, 444
HpyCH4IV ACGT 2 cut(s) 67, 189
HpyCH4V TGCA 4 cut(s) 96, 126, 317, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 5 cut(s) 161, 246, 356, 425, 432
HpySE526I ACGT 2 cut(s) 67, 189
Hsp92II CATG 6 cut(s) 126, 321, 401, 470, 479, 579
KpnI GGTACC 1 cut(s) 457
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 2 cut(s) 232, 519
LmnI GCTCC 2 cut(s) 241, 362
LpnPI CCDG 7 cut(s) 70, 258, 358, 366, 393, 399, 470
MabI ACCWGGT 1 cut(s) 379
MaeII ACGT 2 cut(s) 67, 189
MaeIII GTNAC 3 cut(s) 106, 170, 505
MalI GATC 2 cut(s) 234, 521
MboI GATC 2 cut(s) 232, 519
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 4 cut(s) 111, 178, 208, 563
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 8 cut(s) 5, 154, 192, 241, 263, 353, 400, 525
MroNI GCCGGC 1 cut(s) 56
MseI TTAA 2 cut(s) 23, 50
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 53
NaeI GCCGGC 1 cut(s) 58
NdeII GATC 2 cut(s) 232, 519
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 6 cut(s) 126, 321, 401, 470, 479, 579
NlaIV GGNNCC 6 cut(s) 16, 136, 203, 234, 243, 455
NmeAIII GCCGAG 2 cut(s) 163, 291
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 2 cut(s) 126, 321
NspV TTCGAA 1 cut(s) 448
PaeI GCATGC 1 cut(s) 321
PdiI GCCGGC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 403
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 2 cut(s) 14, 250
Psp5II RGGWCCY 2 cut(s) 14, 250
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 6 cut(s) 16, 136, 203, 234, 243, 455
PspPI GGNCC 2 cut(s) 14, 250
PspPPI RGGWCCY 2 cut(s) 14, 250
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 437, 455
RsaNI GTAC 2 cut(s) 436, 454
SaqAI TTAA 2 cut(s) 23, 50
Sau3AI GATC 2 cut(s) 232, 519
Sau96I GGNCC 2 cut(s) 14, 250
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 413
SexAI ACCWGGT 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 448
SinI GGWCC 2 cut(s) 14, 250
SphI GCATGC 1 cut(s) 321
Sse9I AATT 4 cut(s) 111, 178, 208, 563
SsiI CCGC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 379
TaiI ACGT 2 cut(s) 70, 192
TaqI TCGA 2 cut(s) 255, 448
TasI AATT 4 cut(s) 111, 178, 208, 563
TatI WGTACW 1 cut(s) 435
Tru1I TTAA 2 cut(s) 23, 50
Tru9I TTAA 2 cut(s) 23, 50
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 2 cut(s) 14, 250
XapI RAATTY 2 cut(s) 178, 208
XceI RCATGY 2 cut(s) 126, 321
XcmI CCANNNNNNNNNTGG 2 cut(s) 468, 473
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.