Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| E1_DerP2_DerF2 | PF02221 | 46 - 164 | 7.9e-28 | ML domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 152 |
| AciI | CCGC | 2 cut(s) | 150, 410 |
| AclWI | GGATC | 2 cut(s) | 410, 508 |
| AfaI | GTAC | 3 cut(s) | 146, 312, 375 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 337 |
| AgsI | TTSAA | 4 cut(s) | 235, 287, 481, 487 |
| AhlI | ACTAGT | 1 cut(s) | 65 |
| AjnI | CCWGG | 2 cut(s) | 180, 397 |
| AluBI | AGCT | 3 cut(s) | 96, 227, 343 |
| AluI | AGCT | 3 cut(s) | 96, 227, 343 |
| Alw26I | GTCTC | 2 cut(s) | 361, 514 |
| AlwI | GGATC | 2 cut(s) | 410, 508 |
| ApeKI | GCWGC | 1 cut(s) | 224 |
| AspS9I | GGNCC | 1 cut(s) | 178 |
| AsuC2I | CCSGG | 1 cut(s) | 414 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 223, 292 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BanI | GGYRCC | 1 cut(s) | 152 |
| BanII | GRGCYC | 1 cut(s) | 419 |
| BbvI | GCAGC | 1 cut(s) | 236 |
| BccI | CCATC | 2 cut(s) | 15, 269 |
| BceAI | ACGGC | 1 cut(s) | 155 |
| BciT130I | CCWGG | 2 cut(s) | 182, 399 |
| BcnI | CCSGG | 1 cut(s) | 414 |
| BcoDI | GTCTC | 2 cut(s) | 361, 514 |
| BcuI | ACTAGT | 1 cut(s) | 65 |
| BfaI | CTAG | 2 cut(s) | 66, 516 |
| BisI | GCNGC | 1 cut(s) | 225 |
| BlpI | GCTNAGC | 1 cut(s) | 92 |
| BlsI | GCNGC | 1 cut(s) | 226 |
| BmcAI | AGTACT | 1 cut(s) | 146 |
| Bme1390I | CCNGG | 3 cut(s) | 182, 399, 414 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 1 cut(s) | 178 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmrFI | CCNGG | 3 cut(s) | 182, 399, 414 |
| BmrI | ACTGGG | 1 cut(s) | 200 |
| BmsI | GCATC | 1 cut(s) | 480 |
| BmuI | ACTGGG | 1 cut(s) | 200 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 92 |
| BpuMI | CCSGG | 1 cut(s) | 414 |
| BsaI | GGTCTC | 1 cut(s) | 514 |
| BsaJI | CCNNGG | 2 cut(s) | 181, 398 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 337 |
| Bse1I | ACTGG | 1 cut(s) | 206 |
| BseBI | CCWGG | 2 cut(s) | 182, 399 |
| BseDI | CCNNGG | 2 cut(s) | 181, 398 |
| BseGI | GGATG | 1 cut(s) | 438 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BseMII | CTCAG | 4 cut(s) | 83, 255, 279, 372 |
| BseNI | ACTGG | 1 cut(s) | 206 |
| BseRI | GAGGAG | 1 cut(s) | 353 |
| BseXI | GCAGC | 1 cut(s) | 236 |
| BshNI | GGYRCC | 1 cut(s) | 152 |
| BsiSI | CCGG | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BsmAI | GTCTC | 2 cut(s) | 361, 514 |
| Bso31I | GGTCTC | 1 cut(s) | 514 |
| Bsp1286I | GDGCHC | 1 cut(s) | 419 |
| Bsp1407I | TGTACA | 1 cut(s) | 310 |
| Bsp143I | GATC | 2 cut(s) | 402, 500 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 92 |
| BspACI | CCGC | 2 cut(s) | 150, 410 |
| BspCNI | CTCAG | 4 cut(s) | 84, 254, 278, 371 |
| BspHI | TCATGA | 1 cut(s) | 325 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspPI | GGATC | 2 cut(s) | 410, 508 |
| BspT107I | GGYRCC | 1 cut(s) | 152 |
| BspTNI | GGTCTC | 1 cut(s) | 514 |
| BsrGI | TGTACA | 1 cut(s) | 310 |
| BsrI | ACTGG | 1 cut(s) | 206 |
| BssECI | CCNNGG | 2 cut(s) | 181, 398 |
| BssMI | GATC | 2 cut(s) | 402, 500 |
| Bst2UI | CCWGG | 2 cut(s) | 182, 399 |
| Bst4CI | ACNGT | 1 cut(s) | 120 |
| BstAUI | TGTACA | 1 cut(s) | 310 |
| BstC8I | GCNNGC | 1 cut(s) | 364 |
| BstDEI | CTNAG | 6 cut(s) | 41, 92, 241, 265, 358, 428 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 335 |
| BstF5I | GGATG | 1 cut(s) | 438 |
| BstKTI | GATC | 2 cut(s) | 405, 503 |
| BstMAI | GTCTC | 2 cut(s) | 361, 514 |
| BstMBI | GATC | 2 cut(s) | 402, 500 |
| BstNI | CCWGG | 2 cut(s) | 182, 399 |
| BstSCI | CCNGG | 3 cut(s) | 180, 397, 412 |
| BstV1I | GCAGC | 1 cut(s) | 236 |
| BstX2I | RGATCY | 1 cut(s) | 500 |
| BstYI | RGATCY | 1 cut(s) | 500 |
| BtgZI | GCGATG | 1 cut(s) | 74 |
| BtsCI | GGATG | 1 cut(s) | 438 |
| BtsIMutI | CAGTG | 1 cut(s) | 213 |
| Cac8I | GCNNGC | 1 cut(s) | 364 |
| CciI | TCATGA | 1 cut(s) | 325 |
| Cfr13I | GGNCC | 1 cut(s) | 178 |
| Csp6I | GTAC | 3 cut(s) | 145, 311, 374 |
| CviAII | CATG | 1 cut(s) | 326 |
| CviJI | RGCY | 6 cut(s) | 96, 227, 245, 260, 343, 417 |
| CviKI_1 | RGCY | 6 cut(s) | 96, 227, 245, 260, 343, 417 |
| CviQI | GTAC | 3 cut(s) | 145, 311, 374 |
| DdeI | CTNAG | 6 cut(s) | 41, 92, 241, 265, 358, 428 |
| DpnI | GATC | 2 cut(s) | 404, 502 |
| DpnII | GATC | 2 cut(s) | 402, 500 |
| EciI | GGCGGA | 1 cut(s) | 399 |
| Eco24I | GRGCYC | 1 cut(s) | 419 |
| Eco31I | GGTCTC | 1 cut(s) | 514 |
| Eco32I | GATATC | 1 cut(s) | 195 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 335 |
| EcoRII | CCWGG | 2 cut(s) | 180, 397 |
| EcoRV | GATATC | 1 cut(s) | 195 |
| EcoT38I | GRGCYC | 1 cut(s) | 419 |
| FaeI | CATG | 1 cut(s) | 329 |
| FaiI | YATR | 6 cut(s) | 168, 315, 327, 384, 421, 453 |
| FatI | CATG | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 1 cut(s) | 225 |
| FokI | GGATG | 1 cut(s) | 445 |
| FriOI | GRGCYC | 1 cut(s) | 419 |
| Fsp4HI | GCNGC | 1 cut(s) | 225 |
| FspBI | CTAG | 2 cut(s) | 66, 516 |
| GluI | GCNGC | 1 cut(s) | 225 |
| HapII | CCGG | 1 cut(s) | 413 |
| Hin1II | CATG | 1 cut(s) | 329 |
| HinfI | GANTC | 1 cut(s) | 186 |
| HpaII | CCGG | 1 cut(s) | 413 |
| HphI | GGTGA | 3 cut(s) | 91, 223, 292 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 292, 311 |
| Hpy188I | TCNGA | 1 cut(s) | 500 |
| Hpy188III | TCNNGA | 2 cut(s) | 190, 326 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 292, 311 |
| HpyAV | CCTTC | 3 cut(s) | 42, 169, 241 |
| HpyCH4III | ACNGT | 1 cut(s) | 120 |
| HpyCH4V | TGCA | 1 cut(s) | 471 |
| HpyF3I | CTNAG | 6 cut(s) | 41, 92, 241, 265, 358, 428 |
| Hsp92II | CATG | 1 cut(s) | 329 |
| Kzo9I | GATC | 2 cut(s) | 402, 500 |
| LmnI | GCTCC | 2 cut(s) | 117, 340 |
| Lsp1109I | GCAGC | 1 cut(s) | 236 |
| LweI | GCATC | 1 cut(s) | 480 |
| MaeI | CTAG | 2 cut(s) | 66, 516 |
| MalI | GATC | 2 cut(s) | 404, 502 |
| MboI | GATC | 2 cut(s) | 402, 500 |
| MboII | GAAGA | 2 cut(s) | 57, 487 |
| MfeI | CAATTG | 1 cut(s) | 438 |
| MflI | RGATCY | 1 cut(s) | 500 |
| MhlI | GDGCHC | 1 cut(s) | 419 |
| MluCI | AATT | 2 cut(s) | 438, 489 |
| MlyI | GAGTC | 1 cut(s) | 195 |
| MnlI | CCTC | 4 cut(s) | 112, 209, 331, 436 |
| MseI | TTAA | 1 cut(s) | 141 |
| MspI | CCGG | 1 cut(s) | 413 |
| MspR9I | CCNGG | 3 cut(s) | 182, 399, 414 |
| MunI | CAATTG | 1 cut(s) | 438 |
| MvaI | CCWGG | 2 cut(s) | 182, 399 |
| NciI | CCSGG | 1 cut(s) | 414 |
| NdeII | GATC | 2 cut(s) | 402, 500 |
| NlaIII | CATG | 1 cut(s) | 329 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| PagI | TCATGA | 1 cut(s) | 325 |
| PkrI | GCNGC | 1 cut(s) | 226 |
| PleI | GAGTC | 1 cut(s) | 194 |
| PpsI | GAGTC | 1 cut(s) | 194 |
| Psp6I | CCWGG | 2 cut(s) | 180, 397 |
| PspGI | CCWGG | 2 cut(s) | 180, 397 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PspPI | GGNCC | 1 cut(s) | 178 |
| PsuI | RGATCY | 1 cut(s) | 500 |
| RsaI | GTAC | 3 cut(s) | 146, 312, 375 |
| RsaNI | GTAC | 3 cut(s) | 145, 311, 374 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| SatI | GCNGC | 1 cut(s) | 225 |
| Sau3AI | GATC | 2 cut(s) | 402, 500 |
| Sau96I | GGNCC | 1 cut(s) | 178 |
| ScaI | AGTACT | 1 cut(s) | 146 |
| SchI | GAGTC | 1 cut(s) | 195 |
| ScrFI | CCNGG | 3 cut(s) | 182, 399, 414 |
| SduI | GDGCHC | 1 cut(s) | 419 |
| SfaNI | GCATC | 1 cut(s) | 480 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SpeI | ACTAGT | 1 cut(s) | 65 |
| Sse9I | AATT | 2 cut(s) | 438, 489 |
| SsiI | CCGC | 2 cut(s) | 150, 410 |
| SspMI | CTAG | 2 cut(s) | 66, 516 |
| StyD4I | CCNGG | 3 cut(s) | 180, 397, 412 |
| TaaI | ACNGT | 1 cut(s) | 120 |
| TasI | AATT | 2 cut(s) | 438, 489 |
| TatI | WGTACW | 2 cut(s) | 144, 310 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TscAI | CASTG | 1 cut(s) | 213 |
| TseI | GCWGC | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 213 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 335 |
| XspI | CTAG | 2 cut(s) | 66, 516 |
| ZrmI | AGTACT | 1 cut(s) | 146 |