DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1251 |
| Acc36I | ACCTGC | 1 cut(s) | 1054 |
| AccB1I | GGYRCC | 1 cut(s) | 22 |
| AccIII | TCCGGA | 1 cut(s) | 488 |
| AciI | CCGC | 5 cut(s) | 117, 144, 208, 315, 631 |
| AclWI | GGATC | 1 cut(s) | 143 |
| AcoI | YGGCCR | 1 cut(s) | 268 |
| AcsI | RAATTY | 3 cut(s) | 158, 213, 806 |
| AcuI | CTGAAG | 1 cut(s) | 108 |
| AcyI | GRCGYC | 1 cut(s) | 23 |
| AfaI | GTAC | 5 cut(s) | 50, 227, 604, 989, 1019 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 140, 326, 1063 |
| AgsI | TTSAA | 5 cut(s) | 97, 391, 569, 665, 811 |
| AjiI | CACGTC | 1 cut(s) | 365 |
| AjnI | CCWGG | 5 cut(s) | 334, 730, 928, 1197, 1240 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 383, 415 |
| AleI | CACNNNNGTG | 1 cut(s) | 1273 |
| AluBI | AGCT | 6 cut(s) | 740, 749, 910, 1015, 1082, 1114 |
| AluI | AGCT | 6 cut(s) | 740, 749, 910, 1015, 1082, 1114 |
| Alw21I | GWGCWC | 3 cut(s) | 461, 843, 1270 |
| Alw26I | GTCTC | 7 cut(s) | 73, 349, 355, 400, 605, 988, 1139 |
| Alw44I | GTGCAC | 1 cut(s) | 1266 |
| AlwI | GGATC | 1 cut(s) | 143 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 764, 1114 |
| Ama87I | CYCGRG | 1 cut(s) | 1058 |
| Aor13HI | TCCGGA | 1 cut(s) | 488 |
| AoxI | GGCC | 3 cut(s) | 268, 316, 960 |
| ApaLI | GTGCAC | 1 cut(s) | 1266 |
| ApeKI | GCWGC | 3 cut(s) | 577, 907, 1082 |
| ApoI | RAATTY | 3 cut(s) | 158, 213, 806 |
| AspLEI | GCGC | 2 cut(s) | 25, 1252 |
| AspS9I | GGNCC | 4 cut(s) | 260, 317, 554, 628 |
| AsuC2I | CCSGG | 2 cut(s) | 200, 264 |
| AsuHPI | GGTGA | 4 cut(s) | 242, 547, 746, 779 |
| AvaI | CYCGRG | 1 cut(s) | 1058 |
| AvaII | GGWCC | 3 cut(s) | 260, 554, 628 |
| BaeGI | GKGCMC | 1 cut(s) | 1270 |
| BalI | TGGCCA | 1 cut(s) | 270 |
| BanI | GGYRCC | 1 cut(s) | 22 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 89, 121 |
| BbsI | GAAGAC | 1 cut(s) | 411 |
| Bbv12I | GWGCWC | 3 cut(s) | 461, 843, 1270 |
| BbvI | GCAGC | 3 cut(s) | 589, 919, 1069 |
| BccI | CCATC | 7 cut(s) | 128, 138, 230, 623, 814, 893, 971 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1184, 1218 |
| BciT130I | CCWGG | 5 cut(s) | 336, 732, 930, 1199, 1242 |
| BclI | TGATCA | 1 cut(s) | 220 |
| BcnI | CCSGG | 2 cut(s) | 200, 264 |
| BcoDI | GTCTC | 7 cut(s) | 73, 349, 355, 400, 605, 988, 1139 |
| BfoI | RGCGCY | 1 cut(s) | 26 |
| BfuAI | ACCTGC | 1 cut(s) | 1054 |
| BisI | GCNGC | 5 cut(s) | 117, 316, 578, 908, 1083 |
| BlsI | GCNGC | 5 cut(s) | 118, 317, 579, 909, 1084 |
| BmcAI | AGTACT | 1 cut(s) | 50 |
| Bme1390I | CCNGG | 7 cut(s) | 200, 264, 336, 732, 930, 1199, 1242 |
| Bme18I | GGWCC | 3 cut(s) | 260, 554, 628 |
| BmeT110I | CYCGRG | 1 cut(s) | 1058 |
| BmgBI | CACGTC | 1 cut(s) | 365 |
| BmgT120I | GGNCC | 4 cut(s) | 260, 317, 554, 628 |
| BmiI | GGNNCC | 3 cut(s) | 24, 421, 493 |
| BmrFI | CCNGG | 7 cut(s) | 200, 264, 336, 732, 930, 1199, 1242 |
| BmsI | GCATC | 4 cut(s) | 556, 564, 850, 1109 |
| BpiI | GAAGAC | 1 cut(s) | 411 |
| BpmI | CTGGAG | 1 cut(s) | 627 |
| Bpu10I | CCTNAGC | 1 cut(s) | 174 |
| BpuEI | CTTGAG | 2 cut(s) | 227, 1078 |
| BpuMI | CCSGG | 2 cut(s) | 200, 264 |
| BsaHI | GRCGYC | 1 cut(s) | 23 |
| BsaI | GGTCTC | 3 cut(s) | 400, 605, 988 |
| BsaJI | CCNNGG | 2 cut(s) | 517, 928 |
| BsaWI | WCCGGW | 1 cut(s) | 488 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 275, 305, 360, 390, 642, 672 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 140, 326, 1063 |
| Bse1I | ACTGG | 4 cut(s) | 529, 610, 769, 877 |
| Bse3DI | GCAATG | 3 cut(s) | 454, 595, 1268 |
| BseAI | TCCGGA | 1 cut(s) | 488 |
| BseBI | CCWGG | 5 cut(s) | 336, 732, 930, 1199, 1242 |
| BseDI | CCNNGG | 2 cut(s) | 517, 928 |
| BseGI | GGATG | 8 cut(s) | 130, 241, 799, 829, 904, 1020, 1138, 1234 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 140, 326, 1063 |
| BseMI | GCAATG | 3 cut(s) | 454, 595, 1268 |
| BseMII | CTCAG | 4 cut(s) | 188, 1043, 1044, 1121 |
| BseNI | ACTGG | 4 cut(s) | 529, 610, 769, 877 |
| BseRI | GAGGAG | 8 cut(s) | 24, 27, 283, 1157, 1187, 1190, 1198, 1238 |
| BseSI | GKGCMC | 1 cut(s) | 1270 |
| BseXI | GCAGC | 3 cut(s) | 589, 919, 1069 |
| BshFI | GGCC | 3 cut(s) | 270, 318, 962 |
| BshNI | GGYRCC | 1 cut(s) | 22 |
| BsiHKAI | GWGCWC | 3 cut(s) | 461, 843, 1270 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1058 |
| BsiSI | CCGG | 3 cut(s) | 200, 263, 489 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 140, 326, 1063 |
| BsmAI | GTCTC | 7 cut(s) | 73, 349, 355, 400, 605, 988, 1139 |
| BsmBI | CGTCTC | 2 cut(s) | 355, 1139 |
| BsnI | GGCC | 3 cut(s) | 270, 318, 962 |
| Bso31I | GGTCTC | 3 cut(s) | 400, 605, 988 |
| BsoBI | CYCGRG | 1 cut(s) | 1058 |
| Bsp1286I | GDGCHC | 3 cut(s) | 461, 843, 1270 |
| Bsp13I | TCCGGA | 1 cut(s) | 488 |
| Bsp1407I | TGTACA | 1 cut(s) | 1017 |
| Bsp143I | GATC | 4 cut(s) | 148, 220, 720, 826 |
| BspACI | CCGC | 5 cut(s) | 117, 144, 208, 315, 631 |
| BspANI | GGCC | 3 cut(s) | 270, 318, 962 |
| BspCNI | CTCAG | 4 cut(s) | 187, 1043, 1044, 1120 |
| BspEI | TCCGGA | 1 cut(s) | 488 |
| BspHI | TCATGA | 1 cut(s) | 1002 |
| BspLI | GGNNCC | 3 cut(s) | 24, 421, 493 |
| BspMI | ACCTGC | 1 cut(s) | 1054 |
| BspPI | GGATC | 1 cut(s) | 143 |
| BspQI | GCTCTTC | 2 cut(s) | 26, 1092 |
| BspT107I | GGYRCC | 1 cut(s) | 22 |
| BspTNI | GGTCTC | 3 cut(s) | 400, 605, 988 |
| BsrDI | GCAATG | 3 cut(s) | 454, 595, 1268 |
| BsrGI | TGTACA | 1 cut(s) | 1017 |
| BsrI | ACTGG | 4 cut(s) | 529, 610, 769, 877 |
| BssECI | CCNNGG | 2 cut(s) | 517, 928 |
| BssMI | GATC | 4 cut(s) | 148, 220, 720, 826 |
| BssNI | GRCGYC | 1 cut(s) | 23 |
| BssT1I | CCWWGG | 1 cut(s) | 517 |
| Bst2UI | CCWGG | 5 cut(s) | 336, 732, 930, 1199, 1242 |
| Bst4CI | ACNGT | 4 cut(s) | 230, 558, 642, 760 |
| Bst6I | CTCTTC | 2 cut(s) | 26, 1092 |
| BstACI | GRCGYC | 1 cut(s) | 23 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1258 |
| BstAUI | TGTACA | 1 cut(s) | 1017 |
| BstC8I | GCNNGC | 5 cut(s) | 332, 582, 586, 905, 1013 |
| BstDEI | CTNAG | 5 cut(s) | 174, 191, 1030, 1052, 1107 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1061 |
| BstF5I | GGATG | 8 cut(s) | 130, 241, 799, 829, 904, 1020, 1138, 1234 |
| BstH2I | RGCGCY | 1 cut(s) | 26 |
| BstHHI | GCGC | 2 cut(s) | 25, 1252 |
| BstKTI | GATC | 4 cut(s) | 151, 223, 723, 829 |
| BstMAI | GTCTC | 7 cut(s) | 73, 349, 355, 400, 605, 988, 1139 |
| BstMBI | GATC | 4 cut(s) | 148, 220, 720, 826 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 465, 746, 1079, 1258 |
| BstNI | CCWGG | 5 cut(s) | 336, 732, 930, 1199, 1242 |
| BstNSI | RCATGY | 3 cut(s) | 334, 584, 1240 |
| BstSCI | CCNGG | 7 cut(s) | 198, 262, 334, 730, 928, 1197, 1240 |
| BstSLI | GKGCMC | 1 cut(s) | 1270 |
| BstV1I | GCAGC | 3 cut(s) | 589, 919, 1069 |
| BstV2I | GAAGAC | 1 cut(s) | 411 |
| BstX2I | RGATCY | 1 cut(s) | 148 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 524, 899 |
| BstYI | RGATCY | 1 cut(s) | 148 |
| BsuRI | GGCC | 3 cut(s) | 270, 318, 962 |
| BtrI | CACGTC | 1 cut(s) | 365 |
| BtsCI | GGATG | 8 cut(s) | 130, 241, 799, 829, 904, 1020, 1138, 1234 |
| BtsIMutI | CAGTG | 4 cut(s) | 625, 647, 762, 1038 |
| BveI | ACCTGC | 1 cut(s) | 1054 |
| Cac8I | GCNNGC | 5 cut(s) | 332, 582, 586, 905, 1013 |
| CaiI | CAGNNNCTG | 2 cut(s) | 764, 1114 |
| CciI | TCATGA | 1 cut(s) | 1002 |
| CfoI | GCGC | 2 cut(s) | 25, 1252 |
| Cfr13I | GGNCC | 4 cut(s) | 260, 317, 554, 628 |
| Csp6I | GTAC | 5 cut(s) | 49, 226, 603, 988, 1018 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 490, 525 |
| CviAII | CATG | 8 cut(s) | 272, 331, 581, 689, 1003, 1157, 1168, 1237 |
| CviQI | GTAC | 5 cut(s) | 49, 226, 603, 988, 1018 |
| DdeI | CTNAG | 5 cut(s) | 174, 191, 1030, 1052, 1107 |
| DinI | GGCGCC | 1 cut(s) | 24 |
| DpnI | GATC | 4 cut(s) | 150, 222, 722, 828 |
| DpnII | GATC | 4 cut(s) | 148, 220, 720, 826 |
| DraI | TTTAAA | 1 cut(s) | 163 |
| EaeI | YGGCCR | 1 cut(s) | 268 |
| Eam1104I | CTCTTC | 2 cut(s) | 26, 1092 |
| EarI | CTCTTC | 2 cut(s) | 26, 1092 |
| EciI | GGCGGA | 1 cut(s) | 159 |
| Eco130I | CCWWGG | 1 cut(s) | 517 |
| Eco31I | GGTCTC | 3 cut(s) | 400, 605, 988 |
| Eco47I | GGWCC | 3 cut(s) | 260, 554, 628 |
| Eco57I | CTGAAG | 1 cut(s) | 108 |
| Eco88I | CYCGRG | 1 cut(s) | 1058 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1061 |
| EcoRII | CCWGG | 5 cut(s) | 334, 730, 928, 1197, 1240 |
| EcoT14I | CCWWGG | 1 cut(s) | 517 |
| EgeI | GGCGCC | 1 cut(s) | 24 |
| EheI | GGCGCC | 1 cut(s) | 24 |
| ErhI | CCWWGG | 1 cut(s) | 517 |
| Esp3I | CGTCTC | 2 cut(s) | 355, 1139 |
| FaeI | CATG | 8 cut(s) | 275, 334, 584, 692, 1006, 1160, 1171, 1240 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1071, 1103 |
| FatI | CATG | 8 cut(s) | 271, 330, 580, 688, 1002, 1156, 1167, 1236 |
| FauI | CCCGC | 1 cut(s) | 201 |
| FauNDI | CATATG | 1 cut(s) | 1216 |
| FbaI | TGATCA | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 5 cut(s) | 117, 316, 578, 908, 1083 |
| FokI | GGATG | 8 cut(s) | 117, 248, 786, 836, 911, 1007, 1145, 1241 |
| Fsp4HI | GCNGC | 5 cut(s) | 117, 316, 578, 908, 1083 |
| FspI | TGCGCA | 1 cut(s) | 1251 |
| GlaI | GCGC | 2 cut(s) | 24, 1251 |
| GluI | GCNGC | 5 cut(s) | 117, 316, 578, 908, 1083 |
| GsuI | CTGGAG | 1 cut(s) | 627 |
| HaeII | RGCGCY | 1 cut(s) | 26 |
| HaeIII | GGCC | 3 cut(s) | 270, 318, 962 |
| HapII | CCGG | 3 cut(s) | 200, 263, 489 |
| HhaI | GCGC | 2 cut(s) | 25, 1252 |
| Hin1I | GRCGYC | 1 cut(s) | 23 |
| Hin1II | CATG | 8 cut(s) | 275, 334, 584, 692, 1006, 1160, 1171, 1240 |
| Hin6I | GCGC | 2 cut(s) | 23, 1250 |
| HinP1I | GCGC | 2 cut(s) | 23, 1250 |
| HinfI | GANTC | 5 cut(s) | 58, 240, 565, 950, 1150 |
| HpaII | CCGG | 3 cut(s) | 200, 263, 489 |
| HphI | GGTGA | 4 cut(s) | 242, 547, 746, 779 |
| Hpy166II | GTNNAC | 5 cut(s) | 382, 638, 1036, 1165, 1268 |
| Hpy188I | TCNGA | 3 cut(s) | 8, 1053, 1210 |
| Hpy188III | TCNNGA | 9 cut(s) | 124, 134, 152, 489, 665, 752, 811, 1003, 1109 |
| Hpy8I | GTNNAC | 5 cut(s) | 382, 638, 1036, 1165, 1268 |
| HpyAV | CCTTC | 7 cut(s) | 94, 242, 385, 526, 649, 691, 1000 |
| HpyCH4III | ACNGT | 4 cut(s) | 230, 558, 642, 760 |
| HpyCH4IV | ACGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 8 cut(s) | 468, 577, 588, 645, 706, 1156, 1261, 1268 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 465, 746, 1079, 1258 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 191, 1030, 1052, 1107 |
| HpySE526I | ACGT | 1 cut(s) | 364 |
| Hsp92I | GRCGYC | 1 cut(s) | 23 |
| Hsp92II | CATG | 8 cut(s) | 275, 334, 584, 692, 1006, 1160, 1171, 1240 |
| HspAI | GCGC | 2 cut(s) | 23, 1250 |
| KasI | GGCGCC | 1 cut(s) | 22 |
| Kpn2I | TCCGGA | 1 cut(s) | 488 |
| Ksp22I | TGATCA | 1 cut(s) | 220 |
| Kzo9I | GATC | 4 cut(s) | 148, 220, 720, 826 |
| LguI | GCTCTTC | 2 cut(s) | 26, 1092 |
| LmnI | GCTCC | 5 cut(s) | 464, 491, 754, 838, 1111 |
| Lsp1109I | GCAGC | 3 cut(s) | 589, 919, 1069 |
| LweI | GCATC | 4 cut(s) | 556, 564, 850, 1109 |
| MaeII | ACGT | 1 cut(s) | 364 |
| MaeIII | GTNAC | 5 cut(s) | 194, 535, 620, 760, 849 |
| MalI | GATC | 4 cut(s) | 150, 222, 722, 828 |
| MboI | GATC | 4 cut(s) | 148, 220, 720, 826 |
| MboII | GAAGA | 9 cut(s) | 43, 101, 109, 280, 383, 416, 439, 730, 1079 |
| MflI | RGATCY | 1 cut(s) | 148 |
| MhlI | GDGCHC | 3 cut(s) | 461, 843, 1270 |
| MlsI | TGGCCA | 1 cut(s) | 270 |
| MluCI | AATT | 3 cut(s) | 158, 213, 806 |
| MluNI | TGGCCA | 1 cut(s) | 270 |
| Mly113I | GGCGCC | 1 cut(s) | 23 |
| MlyI | GAGTC | 2 cut(s) | 234, 1144 |
| MmeI | TCCRAC | 1 cut(s) | 1110 |
| Mox20I | TGGCCA | 1 cut(s) | 270 |
| MroI | TCCGGA | 1 cut(s) | 488 |
| MscI | TGGCCA | 1 cut(s) | 270 |
| MseI | TTAA | 2 cut(s) | 162, 957 |
| MslI | CAYNNNNRTG | 2 cut(s) | 897, 1273 |
| Msp20I | TGGCCA | 1 cut(s) | 270 |
| MspA1I | CMGCKG | 1 cut(s) | 633 |
| MspI | CCGG | 3 cut(s) | 200, 263, 489 |
| MspR9I | CCNGG | 7 cut(s) | 200, 264, 336, 732, 930, 1199, 1242 |
| MvaI | CCWGG | 5 cut(s) | 336, 732, 930, 1199, 1242 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 465, 746, 1079, 1258 |
| NarI | GGCGCC | 1 cut(s) | 23 |
| NciI | CCSGG | 2 cut(s) | 200, 264 |
| NdeI | CATATG | 1 cut(s) | 1216 |
| NdeII | GATC | 4 cut(s) | 148, 220, 720, 826 |
| NlaIII | CATG | 8 cut(s) | 275, 334, 584, 692, 1006, 1160, 1171, 1240 |
| NlaIV | GGNNCC | 3 cut(s) | 24, 421, 493 |
| NmuCI | GTSAC | 5 cut(s) | 194, 535, 620, 760, 849 |
| NsbI | TGCGCA | 1 cut(s) | 1251 |
| NspI | RCATGY | 3 cut(s) | 334, 584, 1240 |
| OliI | CACNNNNGTG | 1 cut(s) | 1273 |
| PaeI | GCATGC | 2 cut(s) | 334, 584 |
| PaeR7I | CTCGAG | 1 cut(s) | 1058 |
| PagI | TCATGA | 1 cut(s) | 1002 |
| PciSI | GCTCTTC | 2 cut(s) | 26, 1092 |
| PfeI | GAWTC | 3 cut(s) | 58, 565, 950 |
| PflFI | GACNNNGTC | 1 cut(s) | 758 |
| PkrI | GCNGC | 5 cut(s) | 118, 317, 579, 909, 1084 |
| PleI | GAGTC | 2 cut(s) | 234, 1144 |
| PluTI | GGCGCC | 1 cut(s) | 26 |
| PpsI | GAGTC | 2 cut(s) | 234, 1144 |
| Psp6I | CCWGG | 5 cut(s) | 334, 730, 928, 1197, 1240 |
| PspGI | CCWGG | 5 cut(s) | 334, 730, 928, 1197, 1240 |
| PspN4I | GGNNCC | 3 cut(s) | 24, 421, 493 |
| PspPI | GGNCC | 4 cut(s) | 260, 317, 554, 628 |
| PspXI | VCTCGAGB | 1 cut(s) | 1058 |
| PstNI | CAGNNNCTG | 2 cut(s) | 764, 1114 |
| PsuI | RGATCY | 1 cut(s) | 148 |
| PsyI | GACNNNGTC | 1 cut(s) | 758 |
| RsaI | GTAC | 5 cut(s) | 50, 227, 604, 989, 1019 |
| RsaNI | GTAC | 5 cut(s) | 49, 226, 603, 988, 1018 |
| RseI | CAYNNNNRTG | 2 cut(s) | 897, 1273 |
| SapI | GCTCTTC | 2 cut(s) | 26, 1092 |
| SaqAI | TTAA | 2 cut(s) | 162, 957 |
| SatI | GCNGC | 5 cut(s) | 117, 316, 578, 908, 1083 |
| Sau3AI | GATC | 4 cut(s) | 148, 220, 720, 826 |
| Sau96I | GGNCC | 4 cut(s) | 260, 317, 554, 628 |
| ScaI | AGTACT | 1 cut(s) | 50 |
| SchI | GAGTC | 2 cut(s) | 234, 1144 |
| ScrFI | CCNGG | 7 cut(s) | 200, 264, 336, 732, 930, 1199, 1242 |
| SduI | GDGCHC | 3 cut(s) | 461, 843, 1270 |
| SfaNI | GCATC | 4 cut(s) | 556, 564, 850, 1109 |
| SfoI | GGCGCC | 1 cut(s) | 24 |
| Sfr274I | CTCGAG | 1 cut(s) | 1058 |
| SinI | GGWCC | 3 cut(s) | 260, 554, 628 |
| SlaI | CTCGAG | 1 cut(s) | 1058 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 897, 1273 |
| SmlI | CTYRAG | 3 cut(s) | 242, 1058, 1093 |
| SmoI | CTYRAG | 3 cut(s) | 242, 1058, 1093 |
| SphI | GCATGC | 2 cut(s) | 334, 584 |
| Sse9I | AATT | 3 cut(s) | 158, 213, 806 |
| SsiI | CCGC | 5 cut(s) | 117, 144, 208, 315, 631 |
| SspDI | GGCGCC | 1 cut(s) | 22 |
| StyD4I | CCNGG | 7 cut(s) | 198, 262, 334, 730, 928, 1197, 1240 |
| StyI | CCWWGG | 1 cut(s) | 517 |
| TaaI | ACNGT | 4 cut(s) | 230, 558, 642, 760 |
| TaiI | ACGT | 1 cut(s) | 367 |
| TaqI | TCGA | 3 cut(s) | 425, 497, 1059 |
| TasI | AATT | 3 cut(s) | 158, 213, 806 |
| TatI | WGTACW | 2 cut(s) | 48, 1017 |
| TauI | GCSGC | 2 cut(s) | 119, 318 |
| TfiI | GAWTC | 3 cut(s) | 58, 565, 950 |
| Tru1I | TTAA | 2 cut(s) | 162, 957 |
| Tru9I | TTAA | 2 cut(s) | 162, 957 |
| TscAI | CASTG | 4 cut(s) | 625, 647, 769, 1038 |
| TseFI | GTSAC | 5 cut(s) | 194, 535, 620, 760, 849 |
| TseI | GCWGC | 3 cut(s) | 577, 907, 1082 |
| Tsp45I | GTSAC | 5 cut(s) | 194, 535, 620, 760, 849 |
| TspDTI | ATGAA | 6 cut(s) | 545, 606, 759, 769, 991, 1019 |
| TspGWI | ACGGA | 2 cut(s) | 367, 1133 |
| TspRI | CASTG | 4 cut(s) | 625, 647, 769, 1038 |
| Tth111I | GACNNNGTC | 1 cut(s) | 758 |
| VneI | GTGCAC | 1 cut(s) | 1266 |
| VpaK11BI | GGWCC | 3 cut(s) | 260, 554, 628 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1061 |
| XapI | RAATTY | 3 cut(s) | 158, 213, 806 |
| XceI | RCATGY | 3 cut(s) | 334, 584, 1240 |
| XhoI | CTCGAG | 1 cut(s) | 1058 |
| ZrmI | AGTACT | 1 cut(s) | 50 |