Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000610

Physical Location & Seq

Genomic Coordinates Forward (+)

10862547 .. 10865047

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1118900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGGTGTTTCTCTTTTGTCATCACCAGAATTTCTTCGACTCTTTCTCTTATCTCTCATTACATTGTGTCTCATTCCTCAGCATGTTTTTGCAAGCATAACGAGGCACTACAAGTTTGATATCAAACAGCAGAATGTGACAAGACTCTGCCACACAAAGAGCATTGTAACGGTAAACGGGCAGTTTCCGGGGCCTCAAATTGTTGCTCGGGAGGGTGATCGTGTCCTTATTAAAGTGGTTAATCATGTTCAGAACAACATCTCTATCCAGCACGGCATTCGACAACTTCGATCGGGGTGGGCTGATGGGCCTGCATATGTGACCCAATGTCCCATACAATCAGGCAACAGTTATGTCTACAACTTCACCATTACAGGGCAAAGAGGCACTCTTTTCTGGCATGCTCATATTTCATGGCTTAGATCAACTGTTTATGGTCCCTTGATCATACTTCCCAAGCGCGGTGTACCTTACCCATTCGCCAAGCCCTACAAGGAGGTTCCAATCATCTTCGGAGAGTGGTGGAATGCAGACCCTGAGGCAGTTATTAGCCAGGCCTTGCAAACAGGTGGAGGACCAAATGTCTCCGATGCTTATACTTTCAATGGACTCCCAGGGCCCTTGTATAACTGTTCTGCCAAAGATGCATTCAAGCTAAAGGTTCGATCTGGGAAGACCTACCTTCTCCGCCTAATCAATGCAGCACTCAATGACGAGCTCTTCTTCAGCATAGCAAACCACACCCTCAAAGTGGTAGAAGCTGACGCCATTTATGTCAAGCCCTTTGACACTGATACAGTTCTGATTGCCCCAGGGCAGACTACAAATGTTCTGCTCAAGACCAAACCCCATTTCCCCAGTGCCACATTTTTTATGACTGCCAGGCCGTACGTGACTGGACTAGGAACCTTTGACAACTCTACTGTTGCTGGTATTTTAGAGTATGAATCAACCTCTAAAGCCCTCCACACTACACTCCCAATGAAGAAGCTTCCGCTCTTCAAACCAATTCTTCCTGCTCTAAACGACACATCGTTTGCAACAAAGTTCAGCAACAAACTCCGTAGCTTAGCCAACGCACAATTCCCTGCTAATGTCCCCCAAAAGGTTGACAGACACTTTTTCTTCACAATAGGCCTTGGAACCAACCCCTGCAGCAGCAATAACCAAACCTGCCAGGGACCTAATGGAACAATGTTTGCGGCTTCAGTTAATAACGTTTCTTTTGCAATGCCAACCACTGCTCTACTTCAGGCCCACTTCTCCGGGCAATCAAATGGGGTTTACAGCCCTGACTTCCCAAGCAGTCCTATAATCCCATTTAACTATACAGGCACCCCACCTAATGATACTATGGTGGGCAATGGTACAAAGCTAATGGTACTTCCATATAACACTAGTGTGGAGCTGGTCATGCAGGACACAAGCATTCTGGGCGCCGAAAGCCACCCTCTTCATCTGCATGGATTTAATTTCTTTGTTGTTGGCCAAGGGTTCGGGAACTTTGACCGGAATAAAGACCCTGCAAACTTCAATTTGGTTGACCCTGTTGAAAGAAATACCGTGGGTGTGCCCTCTGGTGGATGGGTTGCCATACGATTCGTAGCAGATAACCCCGGTGTATGGTTCATGCATTGCCATTTGGAGATCCACACTAGTTGGGGCTTGAAGATGGCTTGGCTGGTCCTAGATGGAAAGCTTCCCAACCAGAGGTTGCTTCCTCCCCCGGCGGATCTTCCCACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

583

Amino Acids

64.09

Weight (kDa)

9.09

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	41 - 153	4.3e-38	Multicopper oxidase
Cu-oxidase	PF00394	166 - 317	2e-42	Multicopper oxidase
Cu-oxidase_2	PF07731	434 - 564	3.9e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60020 AT5G60020 AT5G60020
fragaria_vesca	FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica	MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica	Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis	pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis	RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata	RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora	Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa	Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha	Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana	Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1181
AccB1I	GGYRCC	2 cut(s)	1334, 1436
AccBSI	CCGCTC	1 cut(s)	997
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	1 cut(s)	462
AciI	CCGC	5 cut(s)	462, 688, 995, 1202, 1730
AclI	AACGTT	1 cut(s)	1218
AclWI	GGATC	2 cut(s)	1642, 1740
AcoI	YGGCCR	1 cut(s)	1486
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	3 cut(s)	709, 1191, 1235
AcyI	GRCGYC	2 cut(s)	765, 1437
AfaI	GTAC	4 cut(s)	468, 890, 1369, 1383
AfiI	CCNNNNNNNGG	7 cut(s)	375, 461, 751, 1105, 1580, 1623, 1710
AflIII	ACRYGT	1 cut(s)	1742
AgsI	TTSAA	6 cut(s)	604, 652, 1003, 1534, 1553, 1669
AhdI	GACNNNNNGTC	2 cut(s)	327, 581
AhlI	ACTAGT	2 cut(s)	1397, 1655
AjnI	CCWGG	5 cut(s)	552, 613, 811, 881, 1176
AjuI	GAANNNNNNNTTGG	6 cut(s)	632, 664, 836, 868, 1067, 1099
AleI	CACNNNNGTG	1 cut(s)	1400
AluBI	AGCT	8 cut(s)	655, 718, 761, 991, 1068, 1375, 1408, 1699
AluI	AGCT	8 cut(s)	655, 718, 761, 991, 1068, 1375, 1408, 1699
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	2 cut(s)	74, 589
AlwI	GGATC	2 cut(s)	1642, 1740
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	8 cut(s)	191, 308, 555, 617, 884, 1135, 1254, 1486
ApaI	GGGCCC	1 cut(s)	621
ApeKI	GCWGC	3 cut(s)	701, 1155, 1158
ApoI	RAATTY	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	1019, 1051
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	462, 1439
AspS9I	GGNCC	9 cut(s)	191, 308, 437, 575, 617, 618, 1181, 1255, 1684
AsuC2I	CCSGG	4 cut(s)	189, 1267, 1617, 1727
AsuHPI	GGTGA	3 cut(s)	15, 227, 358
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	4 cut(s)	437, 575, 1181, 1684
AxyI	CCTNAGG	1 cut(s)	537
BaeGI	GKGCMC	2 cut(s)	621, 1575
BaeI	ACNNNNGTAYC	2 cut(s)	1341, 1374
BalI	TGGCCA	1 cut(s)	1488
BanI	GGYRCC	2 cut(s)	1334, 1436
BanII	GRGCYC	2 cut(s)	621, 720
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	713, 1167, 1170
BccI	CCATC	4 cut(s)	299, 1578, 1666, 1685
BceAI	ACGGC	2 cut(s)	289, 871
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	5 cut(s)	554, 615, 813, 883, 1178
BclI	TGATCA	1 cut(s)	444
BcnI	CCSGG	4 cut(s)	189, 1267, 1617, 1727
BcoDI	GTCTC	2 cut(s)	74, 589
BcuI	ACTAGT	2 cut(s)	1397, 1655
BfaI	CTAG	4 cut(s)	902, 1398, 1656, 1688
BfmI	CTRYAG	1 cut(s)	1153
BfoI	RGCGCY	1 cut(s)	1440
BfuAI	ACCTGC	1 cut(s)	1181
BisI	GCNGC	4 cut(s)	702, 1156, 1159, 1203
BlpI	GCTNAGC	1 cut(s)	1069
BlsI	GCNGC	4 cut(s)	703, 1157, 1160, 1204
Bme1390I	CCNGG	9 cut(s)	189, 554, 615, 813, 883, 1178, 1267, 1617, 1727
Bme18I	GGWCC	4 cut(s)	437, 575, 1181, 1684
BmeRI	GACNNNNNGTC	2 cut(s)	327, 581
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	9 cut(s)	191, 308, 437, 575, 617, 618, 1181, 1255, 1684
BmiI	GGNNCC	9 cut(s)	192, 439, 501, 619, 907, 1144, 1182, 1336, 1438
BmrFI	CCNGG	9 cut(s)	189, 554, 615, 813, 883, 1178, 1267, 1617, 1727
BmrI	ACTGGG	1 cut(s)	852
BmsI	GCATC	2 cut(s)	580, 634
BmuI	ACTGGG	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	1069
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	4 cut(s)	189, 1267, 1617, 1727
BsaAI	YACGTR	1 cut(s)	892
BsaHI	GRCGYC	2 cut(s)	765, 1437
BsaWI	WCCGGW	1 cut(s)	1509
Bsc4I	CCNNNNNNNGG	7 cut(s)	375, 461, 751, 1105, 1580, 1623, 1710
Bse1I	ACTGG	2 cut(s)	858, 901
Bse21I	CCTNAGG	1 cut(s)	537
Bse3DI	GCAATG	3 cut(s)	1236, 1369, 1633
BseBI	CCWGG	5 cut(s)	554, 615, 813, 883, 1178
BseGI	GGATG	1 cut(s)	1589
BseLI	CCNNNNNNNGG	7 cut(s)	375, 461, 751, 1105, 1580, 1623, 1710
BseMI	GCAATG	3 cut(s)	1236, 1369, 1633
BseMII	CTCAG	2 cut(s)	92, 528
BseNI	ACTGG	2 cut(s)	858, 901
BseSI	GKGCMC	2 cut(s)	621, 1575
BseXI	GCAGC	3 cut(s)	713, 1167, 1170
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	8 cut(s)	193, 310, 557, 619, 886, 1137, 1256, 1488
BshNI	GGYRCC	2 cut(s)	1334, 1436
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	720
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	5 cut(s)	188, 1266, 1510, 1617, 1727
BsiWI	CGTACG	1 cut(s)	888
BslFI	GGGAC	4 cut(s)	315, 423, 1082, 1194
BslI	CCNNNNNNNGG	7 cut(s)	375, 461, 751, 1105, 1580, 1623, 1710
BsmAI	GTCTC	2 cut(s)	74, 589
BsmFI	GGGAC	4 cut(s)	315, 423, 1082, 1194
BsmI	GAATGC	4 cut(s)	276, 532, 647, 1428
BsnI	GGCC	8 cut(s)	193, 310, 557, 619, 886, 1137, 1256, 1488
BsoBI	CYCGRG	1 cut(s)	207
Bsp120I	GGGCCC	1 cut(s)	617
Bsp1286I	GDGCHC	3 cut(s)	621, 720, 1575
Bsp143I	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
Bsp1720I	GCTNAGC	1 cut(s)	1069
BspACI	CCGC	5 cut(s)	462, 688, 995, 1202, 1730
BspANI	GGCC	8 cut(s)	193, 310, 557, 619, 886, 1137, 1256, 1488
BspCNI	CTCAG	2 cut(s)	91, 529
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	9 cut(s)	192, 439, 501, 619, 907, 1144, 1182, 1336, 1438
BspMAI	CTGCAG	1 cut(s)	1157
BspMI	ACCTGC	1 cut(s)	1181
BspPI	GGATC	2 cut(s)	1642, 1740
BspQI	GCTCTTC	2 cut(s)	725, 1004
BspT107I	GGYRCC	2 cut(s)	1334, 1436
BsrBI	CCGCTC	1 cut(s)	997
BsrDI	GCAATG	3 cut(s)	1236, 1369, 1633
BsrI	ACTGG	2 cut(s)	858, 901
BssMI	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
BssNI	GRCGYC	2 cut(s)	765, 1437
BssT1I	CCWWGG	2 cut(s)	1138, 1489
Bst2UI	CCWGG	5 cut(s)	554, 615, 813, 883, 1178
Bst4CI	ACNGT	7 cut(s)	172, 350, 430, 632, 799, 925, 1564
Bst6I	CTCTTC	3 cut(s)	725, 1004, 1458
BstACI	GRCGYC	2 cut(s)	765, 1437
BstBAI	YACGTR	1 cut(s)	892
BstC8I	GCNNGC	3 cut(s)	94, 312, 402
BstDEI	CTNAG	4 cut(s)	78, 419, 537, 1069
BstDSI	CCRYGG	1 cut(s)	1563
BstF5I	GGATG	1 cut(s)	1589
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	1440
BstHHI	GCGC	2 cut(s)	462, 1439
BstKTI	GATC	7 cut(s)	220, 293, 425, 447, 668, 1650, 1735
BstMAI	GTCTC	2 cut(s)	74, 589
BstMBI	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	644, 1414, 1434, 1443
BstNI	CCWGG	5 cut(s)	554, 615, 813, 883, 1178
BstNSI	RCATGY	3 cut(s)	86, 404, 1746
BstSCI	CCNGG	9 cut(s)	187, 552, 613, 811, 881, 1176, 1265, 1615, 1725
BstSFI	CTRYAG	1 cut(s)	1153
BstSLI	GKGCMC	2 cut(s)	621, 1575
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	713, 1167, 1170
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	2 cut(s)	1647, 1732
BstYI	RGATCY	2 cut(s)	1647, 1732
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	8 cut(s)	193, 310, 557, 619, 886, 1137, 1256, 1488
BtgI	CCRYGG	1 cut(s)	1563
BtsCI	GGATG	1 cut(s)	1589
BtsI	GCAGTG	1 cut(s)	1239
BtsIMutI	CAGTG	3 cut(s)	789, 865, 1239
BveI	ACCTGC	1 cut(s)	1181
Cac8I	GCNNGC	3 cut(s)	94, 312, 402
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	2 cut(s)	462, 1439
Cfr13I	GGNCC	9 cut(s)	191, 308, 437, 575, 617, 618, 1181, 1255, 1684
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	4 cut(s)	467, 889, 1368, 1382
CspCI	CAANNNNNGTGG	2 cut(s)	1640, 1675
CviAII	CATG	8 cut(s)	83, 245, 401, 414, 1414, 1463, 1630, 1743
CviQI	GTAC	4 cut(s)	467, 889, 1368, 1382
DdeI	CTNAG	4 cut(s)	78, 419, 537, 1069
DinI	GGCGCC	1 cut(s)	1438
DpnI	GATC	7 cut(s)	219, 292, 424, 446, 667, 1649, 1734
DpnII	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
DriI	GACNNNNNGTC	2 cut(s)	327, 581
EaeI	YGGCCR	1 cut(s)	1486
Eam1104I	CTCTTC	3 cut(s)	725, 1004, 1458
Eam1105I	GACNNNNNGTC	2 cut(s)	327, 581
EarI	CTCTTC	3 cut(s)	725, 1004, 1458
EciI	GGCGGA	2 cut(s)	677, 1745
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	1138, 1489
Eco147I	AGGCCT	2 cut(s)	557, 1137
Eco24I	GRGCYC	2 cut(s)	621, 720
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	4 cut(s)	437, 575, 1181, 1684
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	3 cut(s)	709, 1191, 1235
Eco81I	CCTNAGG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	718
EcoO109I	RGGNCCY	4 cut(s)	191, 617, 618, 1181
EcoRII	CCWGG	5 cut(s)	552, 613, 811, 881, 1176
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	1138, 1489
EcoT22I	ATGCAT	2 cut(s)	649, 1635
EcoT38I	GRGCYC	2 cut(s)	621, 720
EgeI	GGCGCC	1 cut(s)	1438
EheI	GGCGCC	1 cut(s)	1438
ErhI	CCWWGG	2 cut(s)	1138, 1489
FaeI	CATG	8 cut(s)	86, 248, 404, 417, 1417, 1466, 1633, 1746
FaqI	GGGAC	4 cut(s)	315, 423, 1082, 1194
FatI	CATG	8 cut(s)	82, 244, 400, 413, 1413, 1462, 1629, 1742
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	702, 1156, 1159, 1203
FokI	GGATG	1 cut(s)	1596
FriOI	GRGCYC	2 cut(s)	621, 720
Fsp4HI	GCNGC	4 cut(s)	702, 1156, 1159, 1203
FspBI	CTAG	4 cut(s)	902, 1398, 1656, 1688
GlaI	GCGC	2 cut(s)	461, 1438
GluI	GCNGC	4 cut(s)	702, 1156, 1159, 1203
HaeII	RGCGCY	1 cut(s)	1440
HaeIII	GGCC	8 cut(s)	193, 310, 557, 619, 886, 1137, 1256, 1488
HapII	CCGG	5 cut(s)	188, 1266, 1510, 1617, 1727
HgaI	GACGC	1 cut(s)	773
HhaI	GCGC	2 cut(s)	462, 1439
Hin1I	GRCGYC	2 cut(s)	765, 1437
Hin1II	CATG	8 cut(s)	86, 248, 404, 417, 1417, 1466, 1633, 1746
Hin6I	GCGC	2 cut(s)	460, 1437
HinP1I	GCGC	2 cut(s)	460, 1437
HincII	GTYRAC	2 cut(s)	1111, 1543
HindII	GTYRAC	2 cut(s)	1111, 1543
HindIII	AAGCTT	2 cut(s)	989, 1697
HinfI	GANTC	5 cut(s)	39, 144, 609, 947, 1599
HpaII	CCGG	5 cut(s)	188, 1266, 1510, 1617, 1727
HphI	GGTGA	3 cut(s)	15, 227, 358
Hpy166II	GTNNAC	6 cut(s)	175, 358, 467, 1111, 1285, 1543
Hpy188I	TCNGA	4 cut(s)	252, 515, 589, 804
Hpy188III	TCNNGA	3 cut(s)	209, 838, 1498
Hpy8I	GTNNAC	6 cut(s)	175, 358, 467, 1111, 1285, 1543
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	7 cut(s)	172, 350, 430, 632, 799, 925, 1564
HpyCH4IV	ACGT	2 cut(s)	891, 1218
HpyF10VI	GCNNNNNNNGC	4 cut(s)	644, 1414, 1434, 1443
HpyF3I	CTNAG	4 cut(s)	78, 419, 537, 1069
HpySE526I	ACGT	2 cut(s)	891, 1218
Hsp92I	GRCGYC	2 cut(s)	765, 1437
Hsp92II	CATG	8 cut(s)	86, 248, 404, 417, 1417, 1466, 1633, 1746
HspAI	GCGC	2 cut(s)	460, 1437
KasI	GGCGCC	1 cut(s)	1436
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
LguI	GCTCTTC	2 cut(s)	725, 1004
LmnI	GCTCC	1 cut(s)	1405
Lsp1109I	GCAGC	3 cut(s)	713, 1167, 1170
LweI	GCATC	2 cut(s)	580, 634
MaeI	CTAG	4 cut(s)	902, 1398, 1656, 1688
MaeII	ACGT	2 cut(s)	891, 1218
MaeIII	GTNAC	4 cut(s)	136, 166, 319, 892
MalI	GATC	7 cut(s)	219, 292, 424, 446, 667, 1649, 1734
MbiI	CCGCTC	1 cut(s)	997
MboI	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
MflI	RGATCY	2 cut(s)	1647, 1732
MhlI	GDGCHC	3 cut(s)	621, 720, 1575
MlsI	TGGCCA	1 cut(s)	1488
MluCI	AATT	6 cut(s)	29, 198, 1008, 1082, 1471, 1534
MluNI	TGGCCA	1 cut(s)	1488
Mly113I	GGCGCC	1 cut(s)	1437
MlyI	GAGTC	3 cut(s)	33, 138, 603
Mox20I	TGGCCA	1 cut(s)	1488
Mph1103I	ATGCAT	2 cut(s)	649, 1635
MroXI	GAANNNNTTC	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	1488
MseI	TTAA	6 cut(s)	231, 240, 1212, 1323, 1470, 1747
MslI	CAYNNNNRTG	2 cut(s)	1400, 1461
Msp20I	TGGCCA	1 cut(s)	1488
MspI	CCGG	5 cut(s)	188, 1266, 1510, 1617, 1727
MspR9I	CCNGG	9 cut(s)	189, 554, 615, 813, 883, 1178, 1267, 1617, 1727
Mva1269I	GAATGC	4 cut(s)	276, 532, 647, 1428
MvaI	CCWGG	5 cut(s)	554, 615, 813, 883, 1178
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	4 cut(s)	644, 1414, 1434, 1443
NarI	GGCGCC	1 cut(s)	1437
NciI	CCSGG	4 cut(s)	189, 1267, 1617, 1727
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
NlaIII	CATG	8 cut(s)	86, 248, 404, 417, 1417, 1466, 1633, 1746
NlaIV	GGNNCC	9 cut(s)	192, 439, 501, 619, 907, 1144, 1182, 1336, 1438
NmuCI	GTSAC	3 cut(s)	136, 319, 892
NsiI	ATGCAT	2 cut(s)	649, 1635
NspI	RCATGY	3 cut(s)	86, 404, 1746
OliI	CACNNNNGTG	1 cut(s)	1400
PaeI	GCATGC	1 cut(s)	404
PasI	CCCWGGG	2 cut(s)	614, 812
PceI	AGGCCT	2 cut(s)	557, 1137
PciI	ACATGT	1 cut(s)	1742
PciSI	GCTCTTC	2 cut(s)	725, 1004
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PctI	GAATGC	4 cut(s)	276, 532, 647, 1428
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	947, 1599
Pfl23II	CGTACG	1 cut(s)	888
PkrI	GCNGC	4 cut(s)	703, 1157, 1160, 1204
Ple19I	CGATCG	1 cut(s)	293
PleI	GAGTC	3 cut(s)	33, 138, 603
PluTI	GGCGCC	1 cut(s)	1440
PpsI	GAGTC	3 cut(s)	33, 138, 603
Ppu21I	YACGTR	1 cut(s)	892
PpuMI	RGGWCCY	1 cut(s)	1181
PscI	ACATGT	1 cut(s)	1742
Psp124BI	GAGCTC	1 cut(s)	720
Psp1406I	AACGTT	1 cut(s)	1218
Psp5II	RGGWCCY	1 cut(s)	1181
Psp6I	CCWGG	5 cut(s)	552, 613, 811, 881, 1176
PspGI	CCWGG	5 cut(s)	552, 613, 811, 881, 1176
PspLI	CGTACG	1 cut(s)	888
PspN4I	GGNNCC	9 cut(s)	192, 439, 501, 619, 907, 1144, 1182, 1336, 1438
PspOMI	GGGCCC	1 cut(s)	617
PspPI	GGNCC	9 cut(s)	191, 308, 437, 575, 617, 618, 1181, 1255, 1684
PspPPI	RGGWCCY	1 cut(s)	1181
PstI	CTGCAG	1 cut(s)	1157
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	2 cut(s)	1647, 1732
PvuI	CGATCG	1 cut(s)	293
RsaI	GTAC	4 cut(s)	468, 890, 1369, 1383
RsaNI	GTAC	4 cut(s)	467, 889, 1368, 1382
RseI	CAYNNNNRTG	2 cut(s)	1400, 1461
SacI	GAGCTC	1 cut(s)	720
SapI	GCTCTTC	2 cut(s)	725, 1004
SaqAI	TTAA	6 cut(s)	231, 240, 1212, 1323, 1470, 1747
SatI	GCNGC	4 cut(s)	702, 1156, 1159, 1203
Sau3AI	GATC	7 cut(s)	217, 290, 422, 444, 665, 1647, 1732
Sau96I	GGNCC	9 cut(s)	191, 308, 437, 575, 617, 618, 1181, 1255, 1684
SchI	GAGTC	3 cut(s)	33, 138, 603
ScrFI	CCNGG	9 cut(s)	189, 554, 615, 813, 883, 1178, 1267, 1617, 1727
SduI	GDGCHC	3 cut(s)	621, 720, 1575
SfaNI	GCATC	2 cut(s)	580, 634
SfcI	CTRYAG	1 cut(s)	1153
SfoI	GGCGCC	1 cut(s)	1438
SinI	GGWCC	4 cut(s)	437, 575, 1181, 1684
SmiMI	CAYNNNNRTG	2 cut(s)	1400, 1461
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SpeI	ACTAGT	2 cut(s)	1397, 1655
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	6 cut(s)	29, 198, 1008, 1082, 1471, 1534
SseBI	AGGCCT	2 cut(s)	557, 1137
SsiI	CCGC	5 cut(s)	462, 688, 995, 1202, 1730
SspDI	GGCGCC	1 cut(s)	1436
SspMI	CTAG	4 cut(s)	902, 1398, 1656, 1688
SstI	GAGCTC	1 cut(s)	720
StuI	AGGCCT	2 cut(s)	557, 1137
StyD4I	CCNGG	9 cut(s)	187, 552, 613, 811, 881, 1176, 1265, 1615, 1725
StyI	CCWWGG	2 cut(s)	1138, 1489
TaaI	ACNGT	7 cut(s)	172, 350, 430, 632, 799, 925, 1564
TaiI	ACGT	2 cut(s)	894, 1221
TaqI	TCGA	4 cut(s)	37, 280, 289, 664
TasI	AATT	6 cut(s)	29, 198, 1008, 1082, 1471, 1534
TauI	GCSGC	1 cut(s)	1205
TfiI	GAWTC	2 cut(s)	947, 1599
Tru1I	TTAA	6 cut(s)	231, 240, 1212, 1323, 1470, 1747
Tru9I	TTAA	6 cut(s)	231, 240, 1212, 1323, 1470, 1747
TscAI	CASTG	3 cut(s)	796, 865, 1246
TseFI	GTSAC	3 cut(s)	136, 319, 892
TseI	GCWGC	3 cut(s)	701, 1155, 1158
Tsp45I	GTSAC	3 cut(s)	136, 319, 892
TspDTI	ATGAA	5 cut(s)	402, 960, 998, 1445, 1618
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	3 cut(s)	796, 865, 1246
VpaK11BI	GGWCC	4 cut(s)	437, 575, 1181, 1684
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	3 cut(s)	86, 404, 1746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1184
XmiI	GTMKAC	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	4 cut(s)	902, 1398, 1656, 1688
Zsp2I	ATGCAT	2 cut(s)	649, 1635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.