Rw5G038160

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000610
Physical Location & Seq
Reverse (-)
67409430 .. 67423027
13598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038160.1

Sequence Viewer

Length: 1533 bp
ATGGGTGTTGCTCTTCTTTCACTTGTTAGGCACCTTTTTCTCTTTTTCATCACACTGGGTCTCATTGCTCATCAGCAAACTCTTACAAGCATTACAAGGCACTACAAATTTGATATCCAACTGCAAAATGTGACAAGGCTGTGCCACACCAAGAGCATTGTAACCGTAAACGGACAATTTCCTGGGCCTCGAATTGTTGCTAGGGAGGGTGATCACGTCCTCATTAAAGTGGTTAACCATGTTCAAAGCAATATCTCCATCCATTGGTATGGGATTCGACAGCTTCAAACCGGGTGGGCCGATGGTCCGGCATACATTACTCAATGCCCGATACAAACCGGCAACAACTATGTGTATAACTTTACCATTATCGGCCAAAGAGGCACGCTTTGGTGGCATGCTCACATTTCATGGCTAAGATCAACCATCTATGGCCCCTTAATCATTCTTCCCAAGCGTGGTACTGGGGGAGGACCAAATGTTTCTGATGCTTATACCATTAACGGCCTCCCAGGACCCTTGTATAACTGCTCTGCCAAAGATACATTCAAGCTTAAGGTTCAAGCTGGGAAGACATACCTTCTGTGCTTGATCAATGCAGCACTGAACGACGAACTTTTCTTCAGCATTGCAAATCATACTCTCAAAGTAGTCGAAACAGATGCTGTTTATGTTAAGCCCTTCGACACTGACACCATTCTCATTGCCCTAGGACAAACCACAAACGTTCTTCTCAAAACCAAGCCTAACTTCCCAAATGCCACATTTCTCATGACCGCAAGGCCATACGTGACTGGTCTAGGCACCTTTGACAACTTCACTGTTGCTGCCATTCTAGAGTACGAAACGACTGCACTTCACTCAATCCTCCCATTGAACAAACTTTCGCTCCACAAACCAATTCTCTCAACTCTAAACGACACATCGTTTGCAACAAAGTTCGCCAGCAAACTCCGCAGCTTAAACACTTTAGAGTTCCCAGTGAACGTCCCCCAGCAGCAGCACAACAACCAAACCTGCCAAGGACCCAATGGAACCATGTTTGCTGCTTCAATCAACAACGTTTCTTTTACTATGCCAAACACTGGCTTACTCCAATCCCACTTTTCTGGCCAATCAAAGGGACTGAACATTACTAATGTGAGCAATGGTACAAAACTTATGGTGCTTCCGTTTAACACTAGTGTGGAGTTGGTGCTGCAAGACACTAGTATTCTTGGTGCTGAAAGCCATCCTCTTCATCTTCATGGATTCAACTTCTTTGTTGTTGGTCAAGGGTTTGGCAACTTTGACCAGAATTATGACCCTAGGAAGTTCAATCTGGTTGACCCCGTTGAAAGAAACACGGTGGGTGTGCCCTCTGGTCGGTGGGTTGCCATTCAGTTTCTAGCAAATAACCCAGGTGTCTGGTTCATGCATTGCCACTTGGAAATCCACACTAGCTGGGGATTGAAGATGGCTTGGGTAGTCTTAGATGGAGAGCTTCCTAATCAAAAGTTGCTTCCTCCACCACTGGATCTTCCTAATTGCTGA

Protein Analysis

510

Amino Acids

56.58

Weight (kDa)

8.94

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 39 - 152 1.8e-40 Multicopper oxidase
Cu-oxidase PF00394 157 - 282 8.2e-36 Multicopper oxidase
Cu-oxidase_2 PF07731 367 - 492 1e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1025
AccB1I GGYRCC 2 cut(s) 30, 803
AccB7I CCANNNNNTGG 2 cut(s) 264, 1085
AciI CCGC 2 cut(s) 777, 955
AclI AACGTT 2 cut(s) 726, 1062
AclWI GGATC 1 cut(s) 1524
AcoI YGGCCR 2 cut(s) 373, 1111
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 607
AfaI GTAC 3 cut(s) 463, 842, 1153
AfiI CCNNNNNNNGG 5 cut(s) 264, 458, 1085, 1120, 1365
AflII CTTAAG 1 cut(s) 554
AhlI ACTAGT 2 cut(s) 1181, 1208
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 181, 511, 1399
AjuI GAANNNNNNNTTGG 4 cut(s) 530, 562, 734, 766
AleI CACNNNNGTG 1 cut(s) 1184
AluBI AGCT 6 cut(s) 283, 553, 566, 960, 1443, 1483
AluI AGCT 6 cut(s) 283, 553, 566, 960, 1443, 1483
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 1524
AlwNI CAGNNNCTG 1 cut(s) 665
AoxI GGCC 7 cut(s) 185, 297, 373, 433, 505, 782, 1111
ApeKI GCWGC 7 cut(s) 599, 827, 957, 997, 1000, 1046, 1198
ApoI RAATTY 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
AspA2I CCTAGG 2 cut(s) 709, 1307
AspS9I GGNCC 7 cut(s) 185, 297, 305, 434, 473, 515, 1025
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 4 cut(s) 305, 473, 515, 1025
AvrII CCTAGG 2 cut(s) 709, 1307
BaeGI GKGCMC 1 cut(s) 1359
BalI TGGCCA 1 cut(s) 1113
BanI GGYRCC 2 cut(s) 30, 803
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 7 cut(s) 611, 814, 969, 1009, 1012, 1033, 1185
BccI CCATC 6 cut(s) 266, 296, 434, 1239, 1450, 1469
BceAI ACGGC 1 cut(s) 520
BcgI CGANNNNNNTGC 4 cut(s) 644, 678, 833, 867
BciT130I CCWGG 3 cut(s) 183, 513, 1401
BclI TGATCA 2 cut(s) 211, 591
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 65
BcuI ACTAGT 2 cut(s) 1181, 1208
BfaI CTAG 9 cut(s) 201, 710, 800, 836, 1182, 1209, 1308, 1388, 1440
BfrI CTTAAG 1 cut(s) 554
BfuAI ACCTGC 1 cut(s) 1025
BglI GCCNNNNNGGC 1 cut(s) 381
BisI GCNGC 7 cut(s) 600, 828, 958, 998, 1001, 1047, 1199
BlnI CCTAGG 2 cut(s) 709, 1307
BlsI GCNGC 7 cut(s) 601, 829, 959, 999, 1002, 1048, 1200
Bme1390I CCNGG 4 cut(s) 183, 292, 513, 1401
Bme18I GGWCC 4 cut(s) 305, 473, 515, 1025
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 7 cut(s) 185, 297, 305, 434, 473, 515, 1025
BmiI GGNNCC 6 cut(s) 32, 436, 517, 805, 1027, 1036
BmrFI CCNGG 4 cut(s) 183, 292, 513, 1401
BmrI ACTGGG 3 cut(s) 65, 474, 974
BmsI GCATC 2 cut(s) 478, 652
BmuI ACTGGG 3 cut(s) 65, 474, 974
BpiI GAAGAC 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 292
BsaAI YACGTR 1 cut(s) 790
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 6 cut(s) 182, 511, 709, 1021, 1307, 1399
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 458, 1085, 1120, 1365
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 6 cut(s) 60, 469, 799, 980, 1090, 1518
Bse3DI GCAATG 5 cut(s) 63, 627, 702, 1153, 1417
BseBI CCWGG 3 cut(s) 183, 513, 1401
BseDI CCNNGG 6 cut(s) 182, 511, 709, 1021, 1307, 1399
BseGI GGATG 2 cut(s) 258, 1231
BseLI CCNNNNNNNGG 5 cut(s) 264, 458, 1085, 1120, 1365
BseMI GCAATG 5 cut(s) 63, 627, 702, 1153, 1417
BseNI ACTGG 6 cut(s) 60, 469, 799, 980, 1090, 1518
BseSI GKGCMC 1 cut(s) 1359
BseXI GCAGC 7 cut(s) 611, 814, 969, 1009, 1012, 1033, 1185
BseYI CCCAGC 3 cut(s) 566, 993, 1443
BsgI GTGCAG 1 cut(s) 837
BshFI GGCC 7 cut(s) 187, 299, 375, 435, 507, 784, 1113
BshNI GGYRCC 2 cut(s) 30, 803
BsiSI CCGG 3 cut(s) 291, 308, 339
BslFI GGGAC 2 cut(s) 974, 1137
BslI CCNNNNNNNGG 5 cut(s) 264, 458, 1085, 1120, 1365
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 974, 1137
BsnI GGCC 7 cut(s) 187, 299, 375, 435, 507, 784, 1113
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 1359
Bsp143I GATC 4 cut(s) 211, 419, 591, 1516
BspACI CCGC 2 cut(s) 777, 955
BspANI GGCC 7 cut(s) 187, 299, 375, 435, 507, 784, 1113
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 6 cut(s) 32, 436, 517, 805, 1027, 1036
BspMI ACCTGC 1 cut(s) 1025
BspPI GGATC 1 cut(s) 1524
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 2 cut(s) 30, 803
BspTI CTTAAG 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 5 cut(s) 63, 627, 702, 1153, 1417
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 6 cut(s) 60, 469, 799, 980, 1090, 1518
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 6 cut(s) 182, 511, 709, 1021, 1307, 1399
BssMI GATC 4 cut(s) 211, 419, 591, 1516
BssT1I CCWWGG 3 cut(s) 709, 1021, 1307
Bst2UI CCWGG 3 cut(s) 183, 513, 1401
Bst4CI ACNGT 3 cut(s) 166, 823, 1348
Bst6I CTCTTC 2 cut(s) 18, 1242
BstAFI CTTAAG 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 3 cut(s) 386, 399, 946
BstDEI CTNAG 2 cut(s) 416, 1471
BstF5I GGATG 2 cut(s) 258, 1231
BstKTI GATC 4 cut(s) 214, 422, 594, 1519
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 4 cut(s) 211, 419, 591, 1516
BstMWI GCNNNNNNNGC 3 cut(s) 381, 394, 954
BstNI CCWGG 3 cut(s) 183, 513, 1401
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 4 cut(s) 181, 290, 511, 1399
BstSLI GKGCMC 1 cut(s) 1359
BstV1I GCAGC 7 cut(s) 611, 814, 969, 1009, 1012, 1033, 1185
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 1 cut(s) 1516
BstXI CCANNNNNNTGG 3 cut(s) 269, 1109, 1407
BstYI RGATCY 1 cut(s) 1516
BsuRI GGCC 7 cut(s) 187, 299, 375, 435, 507, 784, 1113
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 258, 1231
BtsIMutI CAGTG 7 cut(s) 53, 602, 687, 819, 987, 1083, 1511
BveI ACCTGC 1 cut(s) 1025
Cac8I GCNNGC 3 cut(s) 386, 399, 946
CaiI CAGNNNCTG 1 cut(s) 665
CciI TCATGA 1 cut(s) 771
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 7 cut(s) 185, 297, 305, 434, 473, 515, 1025
Csp6I GTAC 3 cut(s) 462, 841, 1152
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviAII CATG 7 cut(s) 239, 398, 411, 772, 1039, 1247, 1414
CviQI GTAC 3 cut(s) 462, 841, 1152
DdeI CTNAG 2 cut(s) 416, 1471
DpnI GATC 4 cut(s) 213, 421, 593, 1518
DpnII GATC 4 cut(s) 211, 419, 591, 1516
EaeI YGGCCR 2 cut(s) 373, 1111
Eam1104I CTCTTC 2 cut(s) 18, 1242
EarI CTCTTC 2 cut(s) 18, 1242
Eco130I CCWWGG 3 cut(s) 709, 1021, 1307
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 4 cut(s) 305, 473, 515, 1025
Eco57I CTGAAG 1 cut(s) 607
EcoO109I RGGNCCY 2 cut(s) 515, 1025
EcoRII CCWGG 3 cut(s) 181, 511, 1399
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 709, 1021, 1307
EcoT22I ATGCAT 1 cut(s) 1419
ErhI CCWWGG 3 cut(s) 709, 1021, 1307
FaeI CATG 7 cut(s) 242, 401, 414, 775, 1042, 1250, 1417
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FaqI GGGAC 2 cut(s) 974, 1137
FatI CATG 7 cut(s) 238, 397, 410, 771, 1038, 1246, 1413
FbaI TGATCA 2 cut(s) 211, 591
Fnu4HI GCNGC 7 cut(s) 600, 828, 958, 998, 1001, 1047, 1199
FokI GGATG 2 cut(s) 245, 1218
Fsp4HI GCNGC 7 cut(s) 600, 828, 958, 998, 1001, 1047, 1199
FspBI CTAG 9 cut(s) 201, 710, 800, 836, 1182, 1209, 1308, 1388, 1440
GluI GCNGC 7 cut(s) 600, 828, 958, 998, 1001, 1047, 1199
GsaI CCCAGC 3 cut(s) 570, 997, 1447
HaeIII GGCC 7 cut(s) 187, 299, 375, 435, 507, 784, 1113
HapII CCGG 3 cut(s) 291, 308, 339
Hin1II CATG 7 cut(s) 242, 401, 414, 775, 1042, 1250, 1417
HincII GTYRAC 2 cut(s) 235, 1327
HindII GTYRAC 2 cut(s) 235, 1327
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 2 cut(s) 274, 1251
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 3 cut(s) 291, 308, 339
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 4 cut(s) 169, 235, 985, 1327
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 2 cut(s) 772, 836
Hpy8I GTNNAC 4 cut(s) 169, 235, 985, 1327
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 2 cut(s) 590, 691
HpyCH4III ACNGT 3 cut(s) 166, 823, 1348
HpyCH4IV ACGT 5 cut(s) 216, 726, 789, 987, 1062
HpyCH4V TGCA 7 cut(s) 124, 599, 632, 854, 932, 1201, 1417
HpyF10VI GCNNNNNNNGC 3 cut(s) 381, 394, 954
HpyF3I CTNAG 2 cut(s) 416, 1471
HpySE526I ACGT 5 cut(s) 216, 726, 789, 987, 1062
Hsp92II CATG 7 cut(s) 242, 401, 414, 775, 1042, 1250, 1417
Ksp22I TGATCA 2 cut(s) 211, 591
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 4 cut(s) 211, 419, 591, 1516
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 894
Lsp1109I GCAGC 7 cut(s) 611, 814, 969, 1009, 1012, 1033, 1185
LweI GCATC 2 cut(s) 478, 652
MaeI CTAG 9 cut(s) 201, 710, 800, 836, 1182, 1209, 1308, 1388, 1440
MaeII ACGT 5 cut(s) 216, 726, 789, 987, 1062
MaeIII GTNAC 3 cut(s) 130, 160, 790
MalI GATC 4 cut(s) 213, 421, 593, 1518
MboI GATC 4 cut(s) 211, 419, 591, 1516
MboII GAAGA 9 cut(s) 5, 440, 583, 613, 722, 1229, 1235, 1465, 1511
MflI RGATCY 1 cut(s) 1516
MhlI GDGCHC 1 cut(s) 1359
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 6 cut(s) 107, 176, 192, 900, 1297, 1525
MluNI TGGCCA 1 cut(s) 1113
MmeI TCCRAC 1 cut(s) 142
Mox20I TGGCCA 1 cut(s) 1113
Mph1103I ATGCAT 1 cut(s) 1419
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 8 cut(s) 225, 234, 440, 501, 555, 675, 962, 1176
MslI CAYNNNNRTG 4 cut(s) 227, 267, 1184, 1245
Msp20I TGGCCA 1 cut(s) 1113
MspCI CTTAAG 1 cut(s) 554
MspI CCGG 3 cut(s) 291, 308, 339
MspR9I CCNGG 4 cut(s) 183, 292, 513, 1401
MvaI CCWGG 3 cut(s) 183, 513, 1401
MwoI GCNNNNNNNGC 3 cut(s) 381, 394, 954
NciI CCSGG 1 cut(s) 292
NdeII GATC 4 cut(s) 211, 419, 591, 1516
NlaIII CATG 7 cut(s) 242, 401, 414, 775, 1042, 1250, 1417
NlaIV GGNNCC 6 cut(s) 32, 436, 517, 805, 1027, 1036
NmuCI GTSAC 2 cut(s) 130, 790
NsiI ATGCAT 1 cut(s) 1419
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 1184
PaeI GCATGC 1 cut(s) 401
PagI TCATGA 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 274, 1251
PflMI CCANNNNNTGG 2 cut(s) 264, 1085
PkrI GCNGC 7 cut(s) 601, 829, 959, 999, 1002, 1048, 1200
Ppu21I YACGTR 1 cut(s) 790
PpuMI RGGWCCY 2 cut(s) 515, 1025
Psp1406I AACGTT 2 cut(s) 726, 1062
Psp5II RGGWCCY 2 cut(s) 515, 1025
Psp6I CCWGG 3 cut(s) 181, 511, 1399
PspFI CCCAGC 3 cut(s) 566, 993, 1443
PspGI CCWGG 3 cut(s) 181, 511, 1399
PspN4I GGNNCC 6 cut(s) 32, 436, 517, 805, 1027, 1036
PspPI GGNCC 7 cut(s) 185, 297, 305, 434, 473, 515, 1025
PspPPI RGGWCCY 2 cut(s) 515, 1025
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 1516
RsaI GTAC 3 cut(s) 463, 842, 1153
RsaNI GTAC 3 cut(s) 462, 841, 1152
RseI CAYNNNNRTG 4 cut(s) 227, 267, 1184, 1245
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 8 cut(s) 225, 234, 440, 501, 555, 675, 962, 1176
SatI GCNGC 7 cut(s) 600, 828, 958, 998, 1001, 1047, 1199
Sau3AI GATC 4 cut(s) 211, 419, 591, 1516
Sau96I GGNCC 7 cut(s) 185, 297, 305, 434, 473, 515, 1025
ScrFI CCNGG 4 cut(s) 183, 292, 513, 1401
SduI GDGCHC 1 cut(s) 1359
SfaNI GCATC 2 cut(s) 478, 652
SinI GGWCC 4 cut(s) 305, 473, 515, 1025
SmiMI CAYNNNNRTG 4 cut(s) 227, 267, 1184, 1245
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SpeI ACTAGT 2 cut(s) 1181, 1208
SphI GCATGC 1 cut(s) 401
Sse9I AATT 6 cut(s) 107, 176, 192, 900, 1297, 1525
SsiI CCGC 2 cut(s) 777, 955
SspMI CTAG 9 cut(s) 201, 710, 800, 836, 1182, 1209, 1308, 1388, 1440
StyD4I CCNGG 4 cut(s) 181, 290, 511, 1399
StyI CCWWGG 3 cut(s) 709, 1021, 1307
TaaI ACNGT 3 cut(s) 166, 823, 1348
TaiI ACGT 5 cut(s) 219, 729, 792, 990, 1065
TaqI TCGA 4 cut(s) 190, 277, 654, 684
TasI AATT 6 cut(s) 107, 176, 192, 900, 1297, 1525
TfiI GAWTC 2 cut(s) 274, 1251
Tru1I TTAA 8 cut(s) 225, 234, 440, 501, 555, 675, 962, 1176
Tru9I TTAA 8 cut(s) 225, 234, 440, 501, 555, 675, 962, 1176
TscAI CASTG 7 cut(s) 60, 609, 694, 826, 987, 1090, 1518
TseFI GTSAC 2 cut(s) 130, 790
TseI GCWGC 7 cut(s) 599, 827, 957, 997, 1000, 1046, 1198
Tsp45I GTSAC 2 cut(s) 130, 790
TspDTI ATGAA 5 cut(s) 37, 399, 1229, 1235, 1402
TspGWI ACGGA 2 cut(s) 186, 1161
TspRI CASTG 7 cut(s) 60, 609, 694, 826, 987, 1090, 1518
Van91I CCANNNNNTGG 2 cut(s) 264, 1085
Vha464I CTTAAG 1 cut(s) 554
VpaK11BI GGWCC 4 cut(s) 305, 473, 515, 1025
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 1028
XmaJI CCTAGG 2 cut(s) 709, 1307
XspI CTAG 9 cut(s) 201, 710, 800, 836, 1182, 1209, 1308, 1388, 1440
Zsp2I ATGCAT 1 cut(s) 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.