RchiOBHm_Chr5g0061911

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000610
Physical Location & Seq
Reverse (-)
67503003 .. 67506878
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33825

Sequence Viewer

Length: 1746 bp
ATGGGCGTTGCTCTTCTTTCAGTTATTAAGCTCTTTGTTTTCTCTTTCGTCACATTGGGTCTCATTCCTCAGCAGACTCTTGCAAGCATAACGAGACATTACAAGTTTGATATCCAAATGAAAAATGTGACAAGATTGTGTCACATGAAGAGCATTGTAACTGTAAACGGTCAATTTCCTGGGCCTCGAATTGTTGCTAGGGAGGGTGATCGCCTCCTCATTAGAGTGGTTAACCATGTTCAAAGCAACATCTCCATCCACTGGCATGGGATTCGACAACTTCAAACTGGATGGGCAGATGGTCCAGCATACATTACCCAATGTCCAATACAATCTGGCAACGGTTATGTGTACAACTTCACCATTATAGGCCAAAGAGGCACTCTTTGGTGGCATGCTCACATTTCATGGCTAAGATCAACCATCTATGGTCCCCTAATCATTCTTCCCAAGCGTGGTGTTCCTTATCCATTTACCAAACCCTACAAGGAAGTTCCCATCATCTTTGGAGAATGGTGGAATGCAGATCCTGAAGCAGTCATAAACCAAGCCCTGCAAACCGGTGGAGGACCAAATGTTTCTGATGCTTACACAATCAACGGACTCCCAGGGCCATTGTACAACTGCTCTTCCAAAGATACTTTCAAGCTAAAGGTTCAAGCTGGGAAGACATACCTTCTGCGCCTAATCAATGCAGCACTGAACGACGAGCTCTTCTTCAGCATTGCAAACCACACCCTCAAAGTGGTGGAAACTGATGCAGTTTACGTCAAACCCTTCGAGACCAACACCATTCTCATTGCCCCGGGACAAACCACAAATGTTCTTCTCAAAACAAAACCTAACTACCCAAACGCCACATTTTTCATGACTGCAAGGCCATACGTGACTGGTCTAGGCACCTTTGATAACTCCACTCTTGCTGGCATTTTAGAATACGAAACGACTACACTTCATTCAACTCTCCCAATGAACAAACTTCCACTCCACAAACCAATTCTCCCAGTTCTAAATGACACAACATTTGCAACAAAATTCTCCAATAAACTCCGTAGCTTGAACACTCCCCAGTTCCCAGCTAATGTTCCACAGAAAGTTGACAAGCGTTTGTTCTTCACGATAGGGCTTGGAACCAACCCATGCAGCCAACAGAATCACAACAACCAGACTTGCCAGGGACCAAATGGAACGATGTTTGCTGCTTCAATCAATAATGTTTCTTTTGCTATGCCAAACACTGCCTTACTCCAATCCCACTTCTCTGGCCAATCTAAGGGGGTCTATTCGCCTGACTTTCCAATCAGTCCTGTAACTCCATTCAATTACACTGGGGCTCAGCTGAACAATACTAATGTGGGCAACGGTACAAAGCTAATGGTGCTTCCCTTTAATACTAGCGTGGAGTTGGTGTTGCAGGACACTAGTATTCTTGGTGCTGAAAGTCATCCTCTTCATCTTCATGGATTCAATTTCTTTGTTGTTGGTCAAGGGTTTGGGAACTTCGACCAAGATAAGGACCCTAAGAAGTTCAATCTCATCGACCCCGTTGGGAGAAACACCGTGGGTGTGCCATCCGGTGGTTGGGTTGCTATTCGGTTTCTAGCAGACAACCCAGGTGTTTGGTTCATGCATTGTCACTTGGAGATCCATACCAGCTGGGGTTTGAAGATGGCTTGGGTGGTCTTAGATGGAAAGTTTCCCAATCAAAAGTTGCTTCCTCCACCATTGGATCTTCCCAAATGTTAA

Protein Analysis

581

Amino Acids

64.4

Weight (kDa)

9.34

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 38 - 151 1e-41 Multicopper oxidase
Cu-oxidase PF00394 164 - 314 8.7e-44 Multicopper oxidase
Cu-oxidase_2 PF07731 432 - 563 5e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 899
AccB7I CCANNNNNTGG 2 cut(s) 261, 1577
AclWI GGATC 3 cut(s) 521, 1639, 1737
AcoI YGGCCR 1 cut(s) 1264
AcsI RAATTY 1 cut(s) 1034
AcuI CTGAAG 2 cut(s) 552, 703
AfaI GTAC 3 cut(s) 353, 620, 1366
AfiI CCNNNNNNNGG 7 cut(s) 261, 455, 745, 1273, 1513, 1577, 1581
AgeI ACCGGT 1 cut(s) 560
AhlI ACTAGT 1 cut(s) 1421
AjnI CCWGG 4 cut(s) 178, 607, 1173, 1612
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 9 cut(s) 31, 649, 662, 712, 1056, 1079, 1339, 1372, 1656
AluI AGCT 9 cut(s) 31, 649, 662, 712, 1056, 1079, 1339, 1372, 1656
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 3 cut(s) 65, 88, 776
AlwI GGATC 3 cut(s) 521, 1639, 1737
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 5 cut(s) 182, 370, 611, 878, 1264
ApeKI GCWGC 3 cut(s) 695, 1143, 1199
ApoI RAATTY 1 cut(s) 1034
ArsI GACNNNNNNTTYG 2 cut(s) 1007, 1039
AsiGI ACCGGT 1 cut(s) 560
AspLEI GCGC 1 cut(s) 684
AspS9I GGNCC 7 cut(s) 182, 302, 431, 569, 611, 1178, 1516
AsuC2I CCSGG 2 cut(s) 806, 807
AsuHPI GGTGA 2 cut(s) 218, 352
AvaI CYCGRG 1 cut(s) 805
AvaII GGWCC 5 cut(s) 302, 431, 569, 1178, 1516
BalI TGGCCA 1 cut(s) 1266
BanI GGYRCC 1 cut(s) 899
BanII GRGCYC 2 cut(s) 714, 1336
BbsI GAAGAC 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 714
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 707, 1155, 1186
BccI CCATC 8 cut(s) 263, 285, 293, 431, 506, 1579, 1663, 1682
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 4 cut(s) 180, 609, 1175, 1614
BcnI CCSGG 2 cut(s) 806, 807
BcoDI GTCTC 3 cut(s) 65, 88, 776
BcuI ACTAGT 1 cut(s) 1421
BfaI CTAG 5 cut(s) 198, 896, 1395, 1422, 1601
BglI GCCNNNNNGGC 1 cut(s) 378
BisI GCNGC 3 cut(s) 696, 1144, 1200
BlpI GCTNAGC 1 cut(s) 1335
BlsI GCNGC 3 cut(s) 697, 1145, 1201
Bme1390I CCNGG 6 cut(s) 180, 609, 806, 807, 1175, 1614
Bme18I GGWCC 5 cut(s) 302, 431, 569, 1178, 1516
BmeT110I CYCGRG 1 cut(s) 805
BmgT120I GGNCC 7 cut(s) 182, 302, 431, 569, 611, 1178, 1516
BmiI GGNNCC 5 cut(s) 433, 901, 1132, 1179, 1518
BmrFI CCNGG 6 cut(s) 180, 609, 806, 807, 1175, 1614
BmrI ACTGGG 3 cut(s) 998, 1063, 1338
BmsI GCATC 2 cut(s) 574, 748
BmuI ACTGGG 3 cut(s) 998, 1063, 1338
BpiI GAAGAC 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 1335
BpuMI CCSGG 2 cut(s) 806, 807
BsaAI YACGTR 1 cut(s) 886
BsaI GGTCTC 2 cut(s) 65, 776
BsaJI CCNNGG 8 cut(s) 179, 607, 608, 804, 805, 1174, 1560, 1612
BsaWI WCCGGW 2 cut(s) 560, 1574
BsaXI ACNNNNNCTCC 6 cut(s) 969, 984, 999, 1014, 1394, 1424
Bsc4I CCNNNNNNNGG 7 cut(s) 261, 455, 745, 1273, 1513, 1577, 1581
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 6 cut(s) 266, 292, 895, 1004, 1069, 1333
Bse3DI GCAATG 2 cut(s) 723, 798
BseBI CCWGG 4 cut(s) 180, 609, 1175, 1614
BseDI CCNNGG 8 cut(s) 179, 607, 608, 804, 805, 1174, 1560, 1612
BseGI GGATG 4 cut(s) 255, 296, 1444, 1571
BseLI CCNNNNNNNGG 7 cut(s) 261, 455, 745, 1273, 1513, 1577, 1581
BseMI GCAATG 2 cut(s) 723, 798
BseMII CTCAG 2 cut(s) 83, 1349
BseNI ACTGG 6 cut(s) 266, 292, 895, 1004, 1069, 1333
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 3 cut(s) 707, 1155, 1186
BseYI CCCAGC 3 cut(s) 662, 1075, 1656
BshFI GGCC 5 cut(s) 184, 372, 613, 880, 1266
BshNI GGYRCC 1 cut(s) 899
BshTI ACCGGT 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 714
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 3 cut(s) 561, 806, 1575
BslFI GGGAC 3 cut(s) 417, 822, 1191
BslI CCNNNNNNNGG 7 cut(s) 261, 455, 745, 1273, 1513, 1577, 1581
BsmAI GTCTC 3 cut(s) 65, 88, 776
BsmFI GGGAC 3 cut(s) 417, 822, 1191
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 5 cut(s) 184, 372, 613, 880, 1266
Bso31I GGTCTC 2 cut(s) 65, 776
BsoBI CYCGRG 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 714, 1336
Bsp1407I TGTACA 2 cut(s) 351, 618
Bsp143I GATC 5 cut(s) 208, 416, 526, 1644, 1729
Bsp1720I GCTNAGC 1 cut(s) 1335
BspANI GGCC 5 cut(s) 184, 372, 613, 880, 1266
BspCNI CTCAG 2 cut(s) 82, 1348
BspHI TCATGA 1 cut(s) 867
BspLI GGNNCC 5 cut(s) 433, 901, 1132, 1179, 1518
BspPI GGATC 3 cut(s) 521, 1639, 1737
BspQI GCTCTTC 4 cut(s) 18, 143, 634, 719
BspT107I GGYRCC 1 cut(s) 899
BspTNI GGTCTC 2 cut(s) 65, 776
BsrDI GCAATG 2 cut(s) 723, 798
BsrFI RCCGGY 1 cut(s) 560
BsrGI TGTACA 2 cut(s) 351, 618
BsrI ACTGG 6 cut(s) 266, 292, 895, 1004, 1069, 1333
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 8 cut(s) 179, 607, 608, 804, 805, 1174, 1560, 1612
BssMI GATC 5 cut(s) 208, 416, 526, 1644, 1729
Bst2UI CCWGG 4 cut(s) 180, 609, 1175, 1614
Bst4CI ACNGT 5 cut(s) 163, 170, 344, 1364, 1561
Bst6I CTCTTC 5 cut(s) 18, 143, 634, 719, 1455
BstAUI TGTACA 2 cut(s) 351, 618
BstBAI YACGTR 1 cut(s) 886
BstC8I GCNNGC 3 cut(s) 85, 396, 925
BstDEI CTNAG 6 cut(s) 69, 413, 1272, 1335, 1521, 1684
BstDSI CCRYGG 1 cut(s) 1560
BstF5I GGATG 4 cut(s) 255, 296, 1444, 1571
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 5 cut(s) 211, 419, 529, 1647, 1732
BstMAI GTCTC 3 cut(s) 65, 88, 776
BstMBI GATC 5 cut(s) 208, 416, 526, 1644, 1729
BstMWI GCNNNNNNNGC 2 cut(s) 378, 1378
BstNI CCWGG 4 cut(s) 180, 609, 1175, 1614
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 6 cut(s) 178, 607, 804, 805, 1173, 1612
BstV1I GCAGC 3 cut(s) 707, 1155, 1186
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 3 cut(s) 526, 1644, 1729
BstXI CCANNNNNNTGG 3 cut(s) 266, 1262, 1620
BstYI RGATCY 3 cut(s) 526, 1644, 1729
BsuRI GGCC 5 cut(s) 184, 372, 613, 880, 1266
BtgI CCRYGG 1 cut(s) 1560
BtsCI GGATG 4 cut(s) 255, 296, 1444, 1571
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 4 cut(s) 259, 698, 1236, 1326
Cac8I GCNNGC 3 cut(s) 85, 396, 925
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 1 cut(s) 867
CfoI GCGC 1 cut(s) 684
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 7 cut(s) 182, 302, 431, 569, 611, 1178, 1516
Cfr9I CCCGGG 1 cut(s) 805
Csp6I GTAC 3 cut(s) 352, 619, 1365
CspAI ACCGGT 1 cut(s) 560
CviAII CATG 9 cut(s) 145, 236, 266, 395, 408, 868, 1140, 1460, 1627
CviQI GTAC 3 cut(s) 352, 619, 1365
DdeI CTNAG 6 cut(s) 69, 413, 1272, 1335, 1521, 1684
DpnI GATC 5 cut(s) 210, 418, 528, 1646, 1731
DpnII GATC 5 cut(s) 208, 416, 526, 1644, 1729
EaeI YGGCCR 1 cut(s) 1264
Eam1104I CTCTTC 5 cut(s) 18, 143, 634, 719, 1455
EarI CTCTTC 5 cut(s) 18, 143, 634, 719, 1455
Ecl136II GAGCTC 1 cut(s) 712
Eco24I GRGCYC 2 cut(s) 714, 1336
Eco31I GGTCTC 2 cut(s) 65, 776
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 5 cut(s) 302, 431, 569, 1178, 1516
Eco53kI GAGCTC 1 cut(s) 712
Eco57I CTGAAG 2 cut(s) 552, 703
Eco88I CYCGRG 1 cut(s) 805
EcoICRI GAGCTC 1 cut(s) 712
EcoO109I RGGNCCY 1 cut(s) 1516
EcoRII CCWGG 4 cut(s) 178, 607, 1173, 1612
EcoRV GATATC 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 1632
EcoT38I GRGCYC 2 cut(s) 714, 1336
FaeI CATG 9 cut(s) 148, 239, 269, 398, 411, 871, 1143, 1463, 1630
FaqI GGGAC 3 cut(s) 417, 822, 1191
FatI CATG 9 cut(s) 144, 235, 265, 394, 407, 867, 1139, 1459, 1626
Fnu4HI GCNGC 3 cut(s) 696, 1144, 1200
FokI GGATG 4 cut(s) 242, 303, 1431, 1558
FriOI GRGCYC 2 cut(s) 714, 1336
Fsp4HI GCNGC 3 cut(s) 696, 1144, 1200
FspBI CTAG 5 cut(s) 198, 896, 1395, 1422, 1601
GlaI GCGC 1 cut(s) 683
GluI GCNGC 3 cut(s) 696, 1144, 1200
GsaI CCCAGC 3 cut(s) 666, 1079, 1660
HaeIII GGCC 5 cut(s) 184, 372, 613, 880, 1266
HapII CCGG 3 cut(s) 561, 806, 1575
HhaI GCGC 1 cut(s) 684
Hin1II CATG 9 cut(s) 148, 239, 269, 398, 411, 871, 1143, 1463, 1630
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HincII GTYRAC 2 cut(s) 232, 1099
HindII GTYRAC 2 cut(s) 232, 1099
HinfI GANTC 5 cut(s) 76, 271, 603, 1153, 1464
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 3 cut(s) 561, 806, 1575
HphI GGTGA 2 cut(s) 218, 352
Hpy166II GTNNAC 5 cut(s) 166, 232, 352, 766, 1099
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 4 cut(s) 530, 781, 868, 1117
Hpy8I GTNNAC 5 cut(s) 166, 232, 352, 766, 1099
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 2 cut(s) 686, 787
HpyCH4III ACNGT 5 cut(s) 163, 170, 344, 1364, 1561
HpyCH4IV ACGT 2 cut(s) 768, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 1378
HpyF3I CTNAG 6 cut(s) 69, 413, 1272, 1335, 1521, 1684
HpySE526I ACGT 2 cut(s) 768, 885
Hsp92II CATG 9 cut(s) 148, 239, 269, 398, 411, 871, 1143, 1463, 1630
HspAI GCGC 1 cut(s) 682
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 5 cut(s) 208, 416, 526, 1644, 1729
LguI GCTCTTC 4 cut(s) 18, 143, 634, 719
Lsp1109I GCAGC 3 cut(s) 707, 1155, 1186
LweI GCATC 2 cut(s) 574, 748
MaeI CTAG 5 cut(s) 198, 896, 1395, 1422, 1601
MaeII ACGT 2 cut(s) 768, 885
MaeIII GTNAC 7 cut(s) 49, 127, 140, 157, 886, 1309, 1634
MalI GATC 5 cut(s) 210, 418, 528, 1646, 1731
MboI GATC 5 cut(s) 208, 416, 526, 1644, 1729
MflI RGATCY 3 cut(s) 526, 1644, 1729
MhlI GDGCHC 2 cut(s) 714, 1336
MlsI TGGCCA 1 cut(s) 1266
MluCI AATT 6 cut(s) 173, 189, 996, 1034, 1321, 1468
MluNI TGGCCA 1 cut(s) 1266
MlyI GAGTC 2 cut(s) 70, 597
Mox20I TGGCCA 1 cut(s) 1266
Mph1103I ATGCAT 1 cut(s) 1632
MscI TGGCCA 1 cut(s) 1266
MseI TTAA 4 cut(s) 27, 231, 1389, 1744
MslI CAYNNNNRTG 3 cut(s) 224, 264, 1458
Msp20I TGGCCA 1 cut(s) 1266
MspA1I CMGCKG 2 cut(s) 1339, 1656
MspI CCGG 3 cut(s) 561, 806, 1575
MspR9I CCNGG 6 cut(s) 180, 609, 806, 807, 1175, 1614
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 4 cut(s) 180, 609, 1175, 1614
MwoI GCNNNNNNNGC 2 cut(s) 378, 1378
NciI CCSGG 2 cut(s) 806, 807
NdeII GATC 5 cut(s) 208, 416, 526, 1644, 1729
NlaIII CATG 9 cut(s) 148, 239, 269, 398, 411, 871, 1143, 1463, 1630
NlaIV GGNNCC 5 cut(s) 433, 901, 1132, 1179, 1518
NmuCI GTSAC 5 cut(s) 49, 127, 140, 886, 1634
NsiI ATGCAT 1 cut(s) 1632
NspI RCATGY 1 cut(s) 398
PaeI GCATGC 1 cut(s) 398
PagI TCATGA 1 cut(s) 867
PasI CCCWGGG 1 cut(s) 608
PciSI GCTCTTC 4 cut(s) 18, 143, 634, 719
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 3 cut(s) 271, 1153, 1464
PflMI CCANNNNNTGG 2 cut(s) 261, 1577
PinAI ACCGGT 1 cut(s) 560
PkrI GCNGC 3 cut(s) 697, 1145, 1201
PleI GAGTC 2 cut(s) 70, 597
PpsI GAGTC 2 cut(s) 70, 597
Ppu21I YACGTR 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 1516
Psp124BI GAGCTC 1 cut(s) 714
Psp5II RGGWCCY 1 cut(s) 1516
Psp6I CCWGG 4 cut(s) 178, 607, 1173, 1612
PspFI CCCAGC 3 cut(s) 662, 1075, 1656
PspGI CCWGG 4 cut(s) 178, 607, 1173, 1612
PspN4I GGNNCC 5 cut(s) 433, 901, 1132, 1179, 1518
PspPI GGNCC 7 cut(s) 182, 302, 431, 569, 611, 1178, 1516
PspPPI RGGWCCY 1 cut(s) 1516
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 3 cut(s) 526, 1644, 1729
PvuII CAGCTG 2 cut(s) 1339, 1656
RsaI GTAC 3 cut(s) 353, 620, 1366
RsaNI GTAC 3 cut(s) 352, 619, 1365
RseI CAYNNNNRTG 3 cut(s) 224, 264, 1458
SacI GAGCTC 1 cut(s) 714
SapI GCTCTTC 4 cut(s) 18, 143, 634, 719
SaqAI TTAA 4 cut(s) 27, 231, 1389, 1744
SatI GCNGC 3 cut(s) 696, 1144, 1200
Sau3AI GATC 5 cut(s) 208, 416, 526, 1644, 1729
Sau96I GGNCC 7 cut(s) 182, 302, 431, 569, 611, 1178, 1516
SchI GAGTC 2 cut(s) 70, 597
ScrFI CCNGG 6 cut(s) 180, 609, 806, 807, 1175, 1614
SduI GDGCHC 2 cut(s) 714, 1336
SfaNI GCATC 2 cut(s) 574, 748
SinI GGWCC 5 cut(s) 302, 431, 569, 1178, 1516
SmaI CCCGGG 1 cut(s) 807
SmiMI CAYNNNNRTG 3 cut(s) 224, 264, 1458
SpeI ACTAGT 1 cut(s) 1421
SphI GCATGC 1 cut(s) 398
Sse9I AATT 6 cut(s) 173, 189, 996, 1034, 1321, 1468
SspMI CTAG 5 cut(s) 198, 896, 1395, 1422, 1601
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 6 cut(s) 178, 607, 804, 805, 1173, 1612
TaaI ACNGT 5 cut(s) 163, 170, 344, 1364, 1561
TaiI ACGT 2 cut(s) 771, 888
TaqI TCGA 5 cut(s) 187, 274, 780, 1503, 1539
TasI AATT 6 cut(s) 173, 189, 996, 1034, 1321, 1468
TatI WGTACW 2 cut(s) 351, 618
TfiI GAWTC 3 cut(s) 271, 1153, 1464
Tru1I TTAA 4 cut(s) 27, 231, 1389, 1744
Tru9I TTAA 4 cut(s) 27, 231, 1389, 1744
TscAI CASTG 4 cut(s) 266, 705, 1243, 1333
TseFI GTSAC 5 cut(s) 49, 127, 140, 886, 1634
TseI GCWGC 3 cut(s) 695, 1143, 1199
Tsp45I GTSAC 5 cut(s) 49, 127, 140, 886, 1634
TspDTI ATGAA 9 cut(s) 134, 161, 396, 856, 944, 986, 1442, 1448, 1615
TspGWI ACGGA 2 cut(s) 615, 1040
TspMI CCCGGG 1 cut(s) 805
TspRI CASTG 4 cut(s) 266, 705, 1243, 1333
Van91I CCANNNNNTGG 2 cut(s) 261, 1577
VpaK11BI GGWCC 5 cut(s) 302, 431, 569, 1178, 1516
XapI RAATTY 1 cut(s) 1034
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 2 cut(s) 1181, 1578
XmaI CCCGGG 1 cut(s) 805
XspI CTAG 5 cut(s) 198, 896, 1395, 1422, 1601
Zsp2I ATGCAT 1 cut(s) 1632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.