Rw5G038210

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000610
Physical Location & Seq
Forward (+)
67486913 .. 67489518
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038210.1

Sequence Viewer

Length: 1680 bp
ATGGGTGTCTCTATTTTTTCATTGCAAGCGTTTTTCAGGCTCTTTCTCTTCTCTTTCATAACTTTGTGTCTCAGTTCTGAGCTTGCAGTTGCAAGCATTACCAGGCACTACAAGTTTGAAATCAAACTGCAAAATATCACAAGGTTGTGCCATACAAAGAGCGTTGTAACAGTTAATGGGCAGTTTCCCGGACCTCGGATTGTAGCAAGGGAGGGCGATAATCTCCTTATTAAAGTGGTTAATCATGTCCACAACAACATCTCCATCCATTGGCATGGGATTCGACAACTTCGATCCGGGTGGGCCGATGGGCCGGCATATGTGACCCAATGTCATACAAACAGAGGCACCCTTTGGTGGCATGCTCATATTTCATGGCTCAGATCAACTGTCCACGGTCCTCTAGTCATTCTTCCAAAGCGTGGTGTTCCTTACCCATTTATCAAGCCCTACAAGGAAGTACCCATTGTCTTTGGAGAGTGGTGGAATGCAGATCCTGAAGCAGTCATAAACCAGGCACTACAAACTGGTGGAGGCCCAAATGTCTCAGACGCCTATACCATTAATGGACTGCCAGGACCATTGTATAACTGTTCTGCCAAAGATACTTTCAAGCTGAAGGTTCAAGCTGGGAAAACATACCTTCTTCGCCTAATCAACGCAGCACTAAATGACGAGCTCTTCTTCAGCATTGCAAATCATACCCTCAAAGTGGTCGAAACAGACGCCGTTTATGTCAAGCCCTTCGACACCAACACTATTCTCATTGCCCCGGGACAAACCACAAACGTTCTTCTCAAAACCAAACCCAACTTCCCAAATGCTACATTTCTCATGACCGCAAGGCCATACGTGACTGGTCTAGGCACCTTCGACAACTCCACTCTTGCTGGCATTCTAGAGTACGAAACAACCGCATTTCACTCAAACCTCCCACTGAACAAACTTCCACTCCACAAACCAACTCTCCCAGCTCTAAATGACACATCCTTAAACACTCCACAGTTCCCAGCTAACGTCCCACAAAAAGTTGACAAGCGTTTGTTCTTCACAATTGGACTTGGAACCAGCCCATGTAGCCAGCAGCAGCACAACAACCAAACTTGCCAAGGACCCAATGGAACTATGTTTGCTGCTTCAATCAACAACGTTTCTTTTACTATGCCAAACACTGCCTTACTCCAATCCCACTTCTCTGGCCAATCAAAGGGGGTCTATTCCCCTGACTTTCCGATCAGTCCTTTAACTCCATTTAATTACACGGGAGCCCAGCTGAACAATACTAATGTGGGCAATGGTACAAAGCTAATGGTGCTTCCGTTTAATATTAGTGTGGAGTTGGTGTTGCAGGACACTAGTATTCTTGGTGCTGAAAGTCATCCTCTTCATCTTCATGGGTTCAATTTCTTTGTTGTTGGTCAAGGGTTTGGGAACTTCGACCAAAACAAAGACCCTAAGAAGTTCAATCTGGTTGACCCTGTTGAAAGAAACACCGTAGGTGTTCCCTCCGGCGGGTGGGTTGCAATTCGTTTCCTAGCAGACAACCCTGGTGTATGGTTCATGCATTGTCACTTGGAGATCCATACTAGCTGGGGCTTGAAGATGGCATGGGTAGTCCTAGATGGAAAACTTCCCAACCAGAAGTTGCTTCCTCCACCGTCGGATCTTCCCACATGTTGA

Protein Analysis

559

Amino Acids

61.82

Weight (kDa)

9.04

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 42 - 140 1.5e-27 Multicopper oxidase
Cu-oxidase PF00394 153 - 303 2.6e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 411 - 541 4e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 347, 866
AccB7I CCANNNNNTGG 2 cut(s) 270, 422
AciI CCGC 3 cut(s) 840, 915, 1512
AclI AACGTT 2 cut(s) 789, 1149
AclWI GGATC 4 cut(s) 288, 488, 1573, 1671
AcoI YGGCCR 1 cut(s) 1198
AcuI CTGAAG 3 cut(s) 519, 638, 670
AcyI GRCGYC 2 cut(s) 552, 726
AfaI GTAC 3 cut(s) 462, 905, 1300
AfiI CCNNNNNNNGG 9 cut(s) 195, 270, 357, 422, 712, 1207, 1511, 1512, 1515
AflIII ACRYGT 1 cut(s) 1673
AgsI TTSAA 8 cut(s) 119, 613, 626, 1140, 1402, 1465, 1484, 1600
AhdI GACNNNNNGTC 1 cut(s) 330
AhlI ACTAGT 1 cut(s) 1355
AjnI CCWGG 4 cut(s) 101, 513, 574, 1546
AjuI GAANNNNNNNTTGG 4 cut(s) 593, 625, 797, 829
AluBI AGCT 9 cut(s) 82, 616, 629, 679, 974, 1013, 1273, 1306, 1590
AluI AGCT 9 cut(s) 82, 616, 629, 679, 974, 1013, 1273, 1306, 1590
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 3 cut(s) 13, 74, 550
AlwI GGATC 4 cut(s) 288, 488, 1573, 1671
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 772
AoxI GGCC 5 cut(s) 303, 311, 535, 845, 1198
ApeKI GCWGC 4 cut(s) 662, 1084, 1087, 1133
AseI ATTAAT 1 cut(s) 564
AspS9I GGNCC 7 cut(s) 191, 303, 311, 398, 536, 578, 1112
AsuC2I CCSGG 4 cut(s) 189, 298, 773, 774
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 4 cut(s) 191, 398, 578, 1112
BalI TGGCCA 1 cut(s) 1200
BanI GGYRCC 2 cut(s) 347, 866
BanII GRGCYC 2 cut(s) 681, 1270
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 4 cut(s) 674, 1096, 1099, 1120
BccI CCATC 4 cut(s) 272, 302, 1597, 1616
BceAI ACGGC 1 cut(s) 713
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 4 cut(s) 103, 515, 576, 1548
BcnI CCSGG 4 cut(s) 189, 298, 773, 774
BcoDI GTCTC 3 cut(s) 13, 74, 550
BcuI ACTAGT 1 cut(s) 1355
BfaI CTAG 7 cut(s) 404, 863, 899, 1356, 1535, 1587, 1619
BisI GCNGC 4 cut(s) 663, 1085, 1088, 1134
BlsI GCNGC 4 cut(s) 664, 1086, 1089, 1135
Bme1390I CCNGG 8 cut(s) 103, 189, 298, 515, 576, 773, 774, 1548
Bme18I GGWCC 4 cut(s) 191, 398, 578, 1112
BmeRI GACNNNNNGTC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 772
BmgT120I GGNCC 7 cut(s) 191, 303, 311, 398, 536, 578, 1112
BmiI GGNNCC 5 cut(s) 349, 868, 1066, 1114, 1267
BmrFI CCNGG 8 cut(s) 103, 189, 298, 515, 576, 773, 774, 1548
BpuMI CCSGG 4 cut(s) 189, 298, 773, 774
BsaAI YACGTR 1 cut(s) 853
BsaHI GRCGYC 2 cut(s) 552, 726
BsaJI CCNNGG 6 cut(s) 194, 394, 771, 772, 1108, 1546
BsaXI ACNNNNNCTCC 8 cut(s) 245, 275, 936, 951, 966, 981, 1328, 1358
Bsc4I CCNNNNNNNGG 9 cut(s) 195, 270, 357, 422, 712, 1207, 1511, 1512, 1515
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 2 cut(s) 532, 862
Bse3DI GCAATG 4 cut(s) 20, 690, 765, 1300
BseBI CCWGG 4 cut(s) 103, 515, 576, 1548
BseDI CCNNGG 6 cut(s) 194, 394, 771, 772, 1108, 1546
BseGI GGATG 3 cut(s) 264, 986, 1378
BseLI CCNNNNNNNGG 9 cut(s) 195, 270, 357, 422, 712, 1207, 1511, 1512, 1515
BseMI GCAATG 4 cut(s) 20, 690, 765, 1300
BseMII CTCAG 4 cut(s) 69, 85, 394, 561
BseNI ACTGG 2 cut(s) 532, 862
BseXI GCAGC 4 cut(s) 674, 1096, 1099, 1120
BseYI CCCAGC 5 cut(s) 629, 970, 1009, 1269, 1590
BshFI GGCC 5 cut(s) 305, 313, 537, 847, 1200
BshNI GGYRCC 2 cut(s) 347, 866
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 772
BsiSI CCGG 5 cut(s) 189, 297, 314, 773, 1509
BslFI GGGAC 2 cut(s) 789, 1004
BslI CCNNNNNNNGG 9 cut(s) 195, 270, 357, 422, 712, 1207, 1511, 1512, 1515
BsmAI GTCTC 3 cut(s) 13, 74, 550
BsmFI GGGAC 2 cut(s) 789, 1004
BsmI GAATGC 2 cut(s) 493, 894
BsnI GGCC 5 cut(s) 305, 313, 537, 847, 1200
BsoBI CYCGRG 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 681, 1270
Bsp143I GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
BspACI CCGC 3 cut(s) 840, 915, 1512
BspANI GGCC 5 cut(s) 305, 313, 537, 847, 1200
BspCNI CTCAG 4 cut(s) 70, 84, 393, 560
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 5 cut(s) 349, 868, 1066, 1114, 1267
BspPI GGATC 4 cut(s) 288, 488, 1573, 1671
BspQI GCTCTTC 1 cut(s) 686
BspT107I GGYRCC 2 cut(s) 347, 866
BsrDI GCAATG 4 cut(s) 20, 690, 765, 1300
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 2 cut(s) 532, 862
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 6 cut(s) 194, 394, 771, 772, 1108, 1546
BssMI GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
BssNI GRCGYC 2 cut(s) 552, 726
BssT1I CCWWGG 1 cut(s) 1108
Bst2UI CCWGG 4 cut(s) 103, 515, 576, 1548
Bst4CI ACNGT 7 cut(s) 172, 391, 398, 593, 1005, 1495, 1659
Bst6I CTCTTC 3 cut(s) 53, 686, 1389
BstACI GRCGYC 2 cut(s) 552, 726
BstBAI YACGTR 1 cut(s) 853
BstC8I GCNNGC 7 cut(s) 27, 84, 94, 315, 363, 892, 1082
BstDEI CTNAG 5 cut(s) 71, 78, 380, 547, 1455
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 3 cut(s) 264, 986, 1378
BstKTI GATC 6 cut(s) 296, 386, 496, 1236, 1581, 1666
BstMAI GTCTC 3 cut(s) 13, 74, 550
BstMBI GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
BstMWI GCNNNNNNNGC 2 cut(s) 1077, 1312
BstNI CCWGG 4 cut(s) 103, 515, 576, 1548
BstNSI RCATGY 2 cut(s) 365, 1677
BstSCI CCNGG 8 cut(s) 101, 187, 296, 513, 574, 771, 772, 1546
BstV1I GCAGC 4 cut(s) 674, 1096, 1099, 1120
BstX2I RGATCY 3 cut(s) 493, 1578, 1663
BstXI CCANNNNNNTGG 2 cut(s) 275, 1196
BstYI RGATCY 3 cut(s) 493, 1578, 1663
BsuRI GGCC 5 cut(s) 305, 313, 537, 847, 1200
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 3 cut(s) 264, 986, 1378
BtsI GCAGTG 1 cut(s) 1170
BtsIMutI CAGTG 2 cut(s) 935, 1170
Cac8I GCNNGC 7 cut(s) 27, 84, 94, 315, 363, 892, 1082
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 834
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 7 cut(s) 191, 303, 311, 398, 536, 578, 1112
Cfr9I CCCGGG 1 cut(s) 772
CseI GACGC 2 cut(s) 560, 734
Csp6I GTAC 3 cut(s) 461, 904, 1299
CviQI GTAC 3 cut(s) 461, 904, 1299
DdeI CTNAG 5 cut(s) 71, 78, 380, 547, 1455
DpnI GATC 6 cut(s) 295, 385, 495, 1235, 1580, 1665
DpnII GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
DriI GACNNNNNGTC 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 1198
Eam1104I CTCTTC 3 cut(s) 53, 686, 1389
Eam1105I GACNNNNNGTC 1 cut(s) 330
EarI CTCTTC 3 cut(s) 53, 686, 1389
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 1108
Eco24I GRGCYC 2 cut(s) 681, 1270
Eco47I GGWCC 4 cut(s) 191, 398, 578, 1112
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 3 cut(s) 519, 638, 670
Eco88I CYCGRG 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 679
EcoO109I RGGNCCY 1 cut(s) 1112
EcoRII CCWGG 4 cut(s) 101, 513, 574, 1546
EcoT14I CCWWGG 1 cut(s) 1108
EcoT22I ATGCAT 1 cut(s) 1566
EcoT38I GRGCYC 2 cut(s) 681, 1270
ErhI CCWWGG 1 cut(s) 1108
FaqI GGGAC 2 cut(s) 789, 1004
FauI CCCGC 1 cut(s) 1505
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 663, 1085, 1088, 1134
FokI GGATG 3 cut(s) 251, 973, 1365
FriOI GRGCYC 2 cut(s) 681, 1270
Fsp4HI GCNGC 4 cut(s) 663, 1085, 1088, 1134
FspBI CTAG 7 cut(s) 404, 863, 899, 1356, 1535, 1587, 1619
GluI GCNGC 4 cut(s) 663, 1085, 1088, 1134
GsaI CCCAGC 5 cut(s) 633, 974, 1013, 1273, 1594
HaeIII GGCC 5 cut(s) 305, 313, 537, 847, 1200
HapII CCGG 5 cut(s) 189, 297, 314, 773, 1509
HgaI GACGC 2 cut(s) 560, 734
Hin1I GRCGYC 2 cut(s) 552, 726
HincII GTYRAC 2 cut(s) 1033, 1474
HindII GTYRAC 2 cut(s) 1033, 1474
HinfI GANTC 1 cut(s) 280
HpaII CCGG 5 cut(s) 189, 297, 314, 773, 1509
Hpy166II GTNNAC 4 cut(s) 250, 394, 1033, 1474
Hpy188I TCNGA 6 cut(s) 79, 198, 383, 550, 1233, 1663
Hpy188III TCNNGA 3 cut(s) 497, 835, 899
Hpy8I GTNNAC 4 cut(s) 250, 394, 1033, 1474
Hpy99I CGWCG 1 cut(s) 1663
HpyAV CCTTC 4 cut(s) 613, 653, 754, 880
HpyCH4III ACNGT 7 cut(s) 172, 391, 398, 593, 1005, 1495, 1659
HpyCH4IV ACGT 4 cut(s) 789, 852, 1017, 1149
HpyCH4V TGCA 9 cut(s) 25, 86, 92, 130, 491, 695, 1348, 1523, 1564
HpyF10VI GCNNNNNNNGC 2 cut(s) 1077, 1312
HpyF3I CTNAG 5 cut(s) 71, 78, 380, 547, 1455
HpySE526I ACGT 4 cut(s) 789, 852, 1017, 1149
Hsp92I GRCGYC 2 cut(s) 552, 726
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 1 cut(s) 1265
Lsp1109I GCAGC 4 cut(s) 674, 1096, 1099, 1120
MaeI CTAG 7 cut(s) 404, 863, 899, 1356, 1535, 1587, 1619
MaeII ACGT 4 cut(s) 789, 852, 1017, 1149
MaeIII GTNAC 4 cut(s) 166, 322, 853, 1568
MalI GATC 6 cut(s) 295, 385, 495, 1235, 1580, 1665
MboI GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
MfeI CAATTG 1 cut(s) 1053
MflI RGATCY 3 cut(s) 493, 1578, 1663
MhlI GDGCHC 2 cut(s) 681, 1270
MlsI TGGCCA 1 cut(s) 1200
MluCI AATT 4 cut(s) 1053, 1255, 1402, 1524
MluNI TGGCCA 1 cut(s) 1200
MmeI TCCRAC 1 cut(s) 1641
Mox20I TGGCCA 1 cut(s) 1200
Mph1103I ATGCAT 1 cut(s) 1566
MroNI GCCGGC 1 cut(s) 313
MscI TGGCCA 1 cut(s) 1200
MseI TTAA 8 cut(s) 174, 231, 240, 564, 992, 1244, 1254, 1323
MslI CAYNNNNRTG 2 cut(s) 273, 1392
Msp20I TGGCCA 1 cut(s) 1200
MspA1I CMGCKG 1 cut(s) 1273
MspI CCGG 5 cut(s) 189, 297, 314, 773, 1509
MspR9I CCNGG 8 cut(s) 103, 189, 298, 515, 576, 773, 774, 1548
MunI CAATTG 1 cut(s) 1053
Mva1269I GAATGC 2 cut(s) 493, 894
MvaI CCWGG 4 cut(s) 103, 515, 576, 1548
MwoI GCNNNNNNNGC 2 cut(s) 1077, 1312
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 4 cut(s) 189, 298, 773, 774
NdeI CATATG 1 cut(s) 319
NdeII GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
NgoMIV GCCGGC 1 cut(s) 313
NlaIV GGNNCC 5 cut(s) 349, 868, 1066, 1114, 1267
NmuCI GTSAC 3 cut(s) 322, 853, 1568
NsiI ATGCAT 1 cut(s) 1566
NspI RCATGY 2 cut(s) 365, 1677
PaeI GCATGC 1 cut(s) 365
PagI TCATGA 1 cut(s) 834
PciI ACATGT 1 cut(s) 1673
PciSI GCTCTTC 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PctI GAATGC 2 cut(s) 493, 894
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 280
PflMI CCANNNNNTGG 2 cut(s) 270, 422
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 4 cut(s) 664, 1086, 1089, 1135
Ppu21I YACGTR 1 cut(s) 853
PpuMI RGGWCCY 1 cut(s) 1112
PscI ACATGT 1 cut(s) 1673
PshBI ATTAAT 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 681
Psp1406I AACGTT 2 cut(s) 789, 1149
Psp5II RGGWCCY 1 cut(s) 1112
Psp6I CCWGG 4 cut(s) 101, 513, 574, 1546
PspFI CCCAGC 5 cut(s) 629, 970, 1009, 1269, 1590
PspGI CCWGG 4 cut(s) 101, 513, 574, 1546
PspN4I GGNNCC 5 cut(s) 349, 868, 1066, 1114, 1267
PspPI GGNCC 7 cut(s) 191, 303, 311, 398, 536, 578, 1112
PspPPI RGGWCCY 1 cut(s) 1112
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 3 cut(s) 493, 1578, 1663
PvuII CAGCTG 1 cut(s) 1273
RsaI GTAC 3 cut(s) 462, 905, 1300
RsaNI GTAC 3 cut(s) 461, 904, 1299
RseI CAYNNNNRTG 2 cut(s) 273, 1392
SacI GAGCTC 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 8 cut(s) 174, 231, 240, 564, 992, 1244, 1254, 1323
SatI GCNGC 4 cut(s) 663, 1085, 1088, 1134
Sau3AI GATC 6 cut(s) 293, 383, 493, 1233, 1578, 1663
Sau96I GGNCC 7 cut(s) 191, 303, 311, 398, 536, 578, 1112
ScrFI CCNGG 8 cut(s) 103, 189, 298, 515, 576, 773, 774, 1548
SduI GDGCHC 2 cut(s) 681, 1270
SinI GGWCC 4 cut(s) 191, 398, 578, 1112
SmaI CCCGGG 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 273, 1392
SpeI ACTAGT 1 cut(s) 1355
SphI GCATGC 1 cut(s) 365
Sse9I AATT 4 cut(s) 1053, 1255, 1402, 1524
SsiI CCGC 3 cut(s) 840, 915, 1512
SspI AATATT 1 cut(s) 1327
SspMI CTAG 7 cut(s) 404, 863, 899, 1356, 1535, 1587, 1619
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 8 cut(s) 101, 187, 296, 513, 574, 771, 772, 1546
StyI CCWWGG 1 cut(s) 1108
TaaI ACNGT 7 cut(s) 172, 391, 398, 593, 1005, 1495, 1659
TaiI ACGT 4 cut(s) 792, 855, 1020, 1152
TaqI TCGA 6 cut(s) 283, 292, 717, 747, 873, 1437
TasI AATT 4 cut(s) 1053, 1255, 1402, 1524
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 8 cut(s) 174, 231, 240, 564, 992, 1244, 1254, 1323
Tru9I TTAA 8 cut(s) 174, 231, 240, 564, 992, 1244, 1254, 1323
TscAI CASTG 2 cut(s) 942, 1177
TseFI GTSAC 3 cut(s) 322, 853, 1568
TseI GCWGC 4 cut(s) 662, 1084, 1087, 1133
Tsp45I GTSAC 3 cut(s) 322, 853, 1568
TspDTI ATGAA 6 cut(s) 9, 46, 363, 1376, 1382, 1549
TspGWI ACGGA 1 cut(s) 1308
TspMI CCCGGG 1 cut(s) 772
TspRI CASTG 2 cut(s) 942, 1177
Van91I CCANNNNNTGG 2 cut(s) 270, 422
VpaK11BI GGWCC 4 cut(s) 191, 398, 578, 1112
VspI ATTAAT 1 cut(s) 564
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 2 cut(s) 365, 1677
XcmI CCANNNNNNNNNTGG 1 cut(s) 1115
XmaI CCCGGG 1 cut(s) 772
XspI CTAG 7 cut(s) 404, 863, 899, 1356, 1535, 1587, 1619
Zsp2I ATGCAT 1 cut(s) 1566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.